CuGenDBv2

Gene ID	Cmc09g0241621
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr09:3750737..3751792
RNA-Seq Expression	Cmc09g0241621
Synteny	Cmc09g0241621
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041373 - Reverse transcriptase, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAA7016811.1 unnamed protein product [Microthlaspi erraticum]

1.1e-109

56.3

Show/hide

Query:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW
        MPFGL NAPSTFMRLMNQ+L  F   FV+VYFDDIL++S+T +EH  HL+ + + L +N+LY+NLKKC FC  ++ FLGF++ +  I +DE+KV AI++W
Subjt:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW

Query:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS
        P P  V EV++F GLA+FYR+F+ +FSTI APIT+CLKKG F WG++Q  SF L+KEKL   P+L LPDF + F+V  DA G+GIGAVLSQ    +  FS
Subjt:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS

Query:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV
        EKL  +R  WSTY+QE YA+  AL+ WEHYL+  EF+L TDH +LK+L + K INKM ARW+SFLQ+F F+I+HK+G  N+V DALSR+ SLL TL+ E+
Subjt:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV

Query:  MTFKHLPDLYEDDVDFNKPWYKCIHHPEAGEFHIVDEFLFK
        + F+ L +LYE D +F + W KC     + +FHI D FLFK
Subjt:  MTFKHLPDLYEDDVDFNKPWYKCIHHPEAGEFHIVDEFLFK

CAA7021913.1 unnamed protein product [Microthlaspi erraticum]

8.8e-110

55.72

Show/hide

Query:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW
        MPFGL NAPSTFMR+MNQ+LH F+  FV+VYFDDIL++S+T D+H  HLQ + + L +N+LY+NLKKC FC  ++ FLGF++ ++ I +DE KV AIK+W
Subjt:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW

Query:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS
         +P  V EV++F GLA+F R+F+ +FSTI APIT+CLKKG F WG +Q +SF L+KEKL   P+L LPDF + F+V  DA G+GIGAVLSQ    I  FS
Subjt:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS

Query:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV
        EKL  +R  WSTY+QE YA+  AL+ WEHYL+  EF+L TDH +LK+L + K INKM ARW++FLQ+F F+I+HK+G  N+V DALSR+ SLL+TL+ E+
Subjt:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV

Query:  MTFKHLPDLYEDDVDFNKPWYKCIHHPEAGEFHIVDEFLFK
        + F+ L +LYE D +F + W KC  +  + +FH+ D +LFK
Subjt:  MTFKHLPDLYEDDVDFNKPWYKCIHHPEAGEFHIVDEFLFK

KAA0054966.1 transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa]

1.1e-125

70.19

Show/hide

Query:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW
        MPF L NAPSTFMRLMN+VLH FLNKF+IVYFDDILVFS+T D+H  H+  LF+ L  NELY+NLKKCIFC  EI+FLGFII+K+H+LMDEKKVEAIKNW
Subjt:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW

Query:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS
          P+ V +VQ F+GLASFYRKFI N S+IAAPITDCLKKG F WG KQQDSF LLKE L N  +LKLPDF Q F+VAVD  G GIGAVLSQ  H IE+FS
Subjt:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS

Query:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV
        E+L  SR +WSTYEQE+YALV ALK WEHYLLS EF+L+TDHFSLKYL + KSI+ M ARWIS+ QRF+FVIKH+AGKEN+V DALSRK +LL  LS+E+
Subjt:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV

Query:  MTFKHLPDLYEDDVDFNKPWYK
          F H+ +LY+ D DF   W K
Subjt:  MTFKHLPDLYEDDVDFNKPWYK

KAE8652794.1 hypothetical protein Csa_022828 [Cucumis sativus]

9.7e-117

59.82

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Query:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW
        MPFGL NAPSTFMRLMNQ+L  FLN+F++VYFDDIL++S + ++H  H+QLLF AL +NEL INLKKC F    I FL FII  + I +D KK+++I +W
Subjt:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW

Query:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS
        P P   K++Q F+GLASFYR+FI NFSTIAAP+T+CLKKG+F WG  ++DSF  LK  L++ P+LKLP+F +PF+V VDA G+GIG VLSQ  H +E+FS
Subjt:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS

Query:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV
        EKL   R  WSTYEQE+YALV ALK WEHYLL+N F+L+TDHFSLK+L + K+I++M ARW+ FLQRF+FVIKH +GK N+V DALSRK  LL+TL +++
Subjt:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV

Query:  MTFKHLPDLYEDDVDFNKPWYKCIHHPEAGEFHIVDEFLFK
        + F HL  LY  D+DF   W  C +H    ++HIV+ FLFK
Subjt:  MTFKHLPDLYEDDVDFNKPWYKCIHHPEAGEFHIVDEFLFK

XP_034219000.1 uncharacterized protein LOC117630375 [Prunus dulcis]

2.6e-109

55.72

Show/hide

Query:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW
        MPFGL NAPSTFMRLMNQVL  F+  FV+VYFDDIL++S T +EH VHL+ + + L +N+LY+NLKKC FC  ++ FLGF++ +N I +D+KK++AI +W
Subjt:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW

Query:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS
        P P  V EV++F GLA+FYR+F+ +FS+IAAPIT+CLKKG F WG +Q+ SF  +KEKL   P+L LP+F + F+V  DA G+G+GAVLSQ    +  FS
Subjt:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS

Query:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV
        +KL  +R  WSTY+QE YA+V ALK WEHYL+  EF+L TDH +LKY+ + K+I+KM ARW++FLQ+F+FVIKH +GK NRV DALSR+ SLL TL+ EV
Subjt:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV

Query:  MTFKHLPDLYEDDVDFNKPWYKCIHHPEAGEFHIVDEFLFK
        + F+ L +LYE D DF + W KC +     ++ + + +LFK
Subjt:  MTFKHLPDLYEDDVDFNKPWYKCIHHPEAGEFHIVDEFLFK

TrEMBL top hits

e value

%identity

Alignment

A0A5D3DGR0 Reverse transcriptase

5.5e-126

70.19

Show/hide

Query:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW
        MPF L NAPSTFMRLMN+VLH FLNKF+IVYFDDILVFS+T D+H  H+  LF+ L  NELY+NLKKCIFC  EI+FLGFII+K+H+LMDEKKVEAIKNW
Subjt:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW

Query:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS
          P+ V +VQ F+GLASFYRKFI N S+IAAPITDCLKKG F WG KQQDSF LLKE L N  +LKLPDF Q F+VAVD  G GIGAVLSQ  H IE+FS
Subjt:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS

Query:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV
        E+L  SR +WSTYEQE+YALV ALK WEHYLLS EF+L+TDHFSLKYL + KSI+ M ARWIS+ QRF+FVIKH+AGKEN+V DALSRK +LL  LS+E+
Subjt:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV

Query:  MTFKHLPDLYEDDVDFNKPWYK
          F H+ +LY+ D DF   W K
Subjt:  MTFKHLPDLYEDDVDFNKPWYK

A0A5E4FUK3 PREDICTED: reverse mRNAase (Fragment)

1.6e-109

55.72

Show/hide

Query:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW
        MPFGL NAPSTFMRLMNQVL  F+  FV+VYFDDIL++S T +EH VHL+ + + L +N+LY+NLKKC FC  ++ FLGF++ +N I +D++K++AI +W
Subjt:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW

Query:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS
        P P  V EV++F GLA+FYR+F+ +FS+IAAPIT+CLKKG F WG +Q+ SF  +KEKL   P+L LP+F + F+V  DA G+G+GAVLSQ    +  FS
Subjt:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS

Query:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV
        EKL  +R  WSTY+QE YA+V ALK WEHYL+  EF+L TDH +LKY+ + K+I+KM ARW++FLQ+F+FVIKH +GK NRV DALSR+ SLL TL+ EV
Subjt:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV

Query:  MTFKHLPDLYEDDVDFNKPWYKCIHHPEAGEFHIVDEFLFK
        + F+ L +LYE D DF + W KC +     ++ + + +LFK
Subjt:  MTFKHLPDLYEDDVDFNKPWYKCIHHPEAGEFHIVDEFLFK

A0A6D2HS27 Uncharacterized protein

5.5e-110

56.3

Show/hide

Query:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW
        MPFGL NAPSTFMRLMNQ+L  F   FV+VYFDDIL++S+T +EH  HL+ + + L +N+LY+NLKKC FC  ++ FLGF++ +  I +DE+KV AI++W
Subjt:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW

Query:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS
        P P  V EV++F GLA+FYR+F+ +FSTI APIT+CLKKG F WG++Q  SF L+KEKL   P+L LPDF + F+V  DA G+GIGAVLSQ    +  FS
Subjt:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS

Query:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV
        EKL  +R  WSTY+QE YA+  AL+ WEHYL+  EF+L TDH +LK+L + K INKM ARW+SFLQ+F F+I+HK+G  N+V DALSR+ SLL TL+ E+
Subjt:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV

Query:  MTFKHLPDLYEDDVDFNKPWYKCIHHPEAGEFHIVDEFLFK
        + F+ L +LYE D +F + W KC     + +FHI D FLFK
Subjt:  MTFKHLPDLYEDDVDFNKPWYKCIHHPEAGEFHIVDEFLFK

A0A6D2I9U6 Uncharacterized protein

4.2e-110

55.72

Show/hide

Query:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW
        MPFGL NAPSTFMR+MNQ+LH F+  FV+VYFDDIL++S+T D+H  HLQ + + L +N+LY+NLKKC FC  ++ FLGF++ ++ I +DE KV AIK+W
Subjt:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW

Query:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS
         +P  V EV++F GLA+F R+F+ +FSTI APIT+CLKKG F WG +Q +SF L+KEKL   P+L LPDF + F+V  DA G+GIGAVLSQ    I  FS
Subjt:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS

Query:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV
        EKL  +R  WSTY+QE YA+  AL+ WEHYL+  EF+L TDH +LK+L + K INKM ARW++FLQ+F F+I+HK+G  N+V DALSR+ SLL+TL+ E+
Subjt:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV

Query:  MTFKHLPDLYEDDVDFNKPWYKCIHHPEAGEFHIVDEFLFK
        + F+ L +LYE D +F + W KC  +  + +FH+ D +LFK
Subjt:  MTFKHLPDLYEDDVDFNKPWYKCIHHPEAGEFHIVDEFLFK

A0A6D2JQY0 Reverse transcriptase

1.6e-109

56.01

Show/hide

Query:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW
        MPFGL NAPSTFMRLMNQ+L  F   FV+VYFDDIL++S+T +EH  HL+ + + L +N+LY+NLKKC FC  ++ FLGF++ +  I +DE+KV AI++W
Subjt:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW

Query:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS
        P P  V EV++F GLA+FYR+F+ +FSTI APIT+CLKKG F WG++Q  SF L+KEKL   P+L LPDF + F+V  DA G+GIGAVLSQ    +  FS
Subjt:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFS

Query:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV
        EKL  +R  WSTY+QE YA+  AL+ WEHYL+  EF+L TDH +LK+L + K INKM ARW+SFLQ+F F+I+H +G  N+V DALSR+ SLL TL+ E+
Subjt:  EKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEV

Query:  MTFKHLPDLYEDDVDFNKPWYKCIHHPEAGEFHIVDEFLFK
        + F+ L +LYE D +F + W KC     + +FHI D FLFK
Subjt:  MTFKHLPDLYEDDVDFNKPWYKCIHHPEAGEFHIVDEFLFK

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

1.2e-64

46.55

Show/hide

Query:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW
        MPFGL NAP+TF R MN +L   LNK  +VY DDI+VFS +LDEH   L L+FE LAK  L + L KC F  +E +FLG ++  + I  + +K+EAI+ +
Subjt:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW

Query:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFL-WGNKQQDS-FELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEH
        PIP+  KE++ F+GL  +YRKFI NF+ IA P+T CLKK   +   N + DS F+ LK  +S +PILK+PDF++ F +  DA  + +GAVLSQ  H + +
Subjt:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFL-WGNKQQDS-FELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEH

Query:  FSEKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSR
         S  L      +ST E+E+ A+V A K + HYLL   F + +DH  L +L   K  N    RW   L  F+F IK+  GKEN V DALSR
Subjt:  FSEKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSR

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

1.2e-48

37.38

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Query:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW
        +PFGL NA S F R ++ VL   + K   VY DD+++FS    +H  H+  + + L    + ++ +K  F  E + +LGFI+ K+    D +KV+AI+ +
Subjt:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW

Query:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCL------------KKGTFLWGNKQQDSFELLKEKL-SNNPILKLPDFSQPFKVAVDARGIGIGA
        P P  V +V++F+GLAS+YR FI +F+ IA PITD L            KK    +   Q+++F+ L+  L S + ILK PDF +PF +  DA   GIGA
Subjt:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCL------------KKGTFLWGNKQQDSFELLKEKL-SNNPILKLPDFSQPFKVAVDARGIGIGA

Query:  VLSQSSHHIEHFSEKLGPSRHTWSTYEQEMYALVCALKHWEHYLL-SNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDAL
        VLSQ    I   S  L      ++T E+E+ A+V AL   +++L  S E  + TDH  L +  A ++ N    RW S++ + N  + +K GKEN V DAL
Subjt:  VLSQSSHHIEHFSEKLGPSRHTWSTYEQEMYALVCALKHWEHYLL-SNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDAL

Query:  SRKHSLLSTLSTE
        SR++  L+ L  E
Subjt:  SRKHSLLSTLSTE

P20825 Retrovirus-related Pol polyprotein from transposon 297

1.3e-60

44.14

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Query:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW
        MPFGL NAP+TF R MN +L   LNK  +VY DDI++FS +L EH   +QL+F  LA   L + L KC F  +E +FLG I+  + I  +  KV+AI ++
Subjt:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW

Query:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQ--DSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEH
        PIP+  KE++ F+GL  +YRKFI N++ IA P+T CLKK T +   K +  ++FE LK  +  +PIL+LPDF + F +  DA  + +GAVLSQ+ H I  
Subjt:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQ--DSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEH

Query:  FSEKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSR
         S  L      +S  E+E+ A+V A K + HYLL  +FL+ +DH  L++L   K       RW   L  + F I +  GKEN V DALSR
Subjt:  FSEKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

3.8e-47

35.53

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Query:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW
        +PFGL NAP+ F R+++ +L   + K   VY DDI+VFS   D H  +L+L+  +L+K  L +NL+K  F   ++ FLG+I+  + I  D KKV AI   
Subjt:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW

Query:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQ-------------DSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGA
        P P+ VKE++ F+G+ S+YRKFI +++ +A P+T+ L +G +      Q              SF  LK  L ++ IL  P F++PF +  DA    IGA
Subjt:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQ-------------DSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGA

Query:  VLSQS----SHHIEHFSEKLGPSRHTWSTYEQEMYALVCALKHWEHYLL-SNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRV
        VLSQ        I + S  L  +   ++T E+EM A++ +L +   YL  +    + TDH  L +   +++ N    RW + ++ +N  + +K GK N V
Subjt:  VLSQS----SHHIEHFSEKLGPSRHTWSTYEQEMYALVCALKHWEHYLL-SNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRV

Query:  VDALSRKHSLLSTLSTEV
         DALSR    L+ LST++
Subjt:  VDALSRKHSLLSTLSTEV

Q99315 Transposon Ty3-G Gag-Pol polyprotein

3.9e-44

37.16

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Query:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW
        MPFGL NAPSTF R M         +FV VY DDIL+FS + +EH  HL  + E L    L +  KKC F  EE  FLG+ I    I   + K  AI+++
Subjt:  MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNW

Query:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPIT--DCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHH---
        P P  VK+ Q F+G+ ++YR+FI N S IA PI    C K     W  KQ  + + LK+ L N+P+L   +    +++  DA   GIGAVL +  +    
Subjt:  PIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPIT--DCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHH---

Query:  ---IEHFSEKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSR
           + +FS+ L  ++  +   E E+  ++ AL H+ + L    F L TDH SL  LQ      +   RW+  L  ++F +++ AG +N V DA+SR
Subjt:  ---IEHFSEKLGPSRHTWSTYEQEMYALVCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSR

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

9.0e-20

34.59

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Query:  HLQLLFEALAKNELYINLKKCIFCMEEISFLG--FIIKKNHILMDEKKVEAIKNWPIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWG
        HL ++ +   +++ Y N KKC F   +I++LG   II    +  D  K+EA+  WP P    E++ F+GL  +YR+F+ N+  I  P+T+ LKK +  W 
Subjt:  HLQLLFEALAKNELYINLKKCIFCMEEISFLG--FIIKKNHILMDEKKVEAIKNWPIPSLVKEVQTFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWG

Query:  NKQQDSFELLKEKLSNNPILKLPDFSQPFKVAV
             +F+ LK  ++  P+L LPD   PF   V
Subjt:  NKQQDSFELLKEKLSNNPILKLPDFSQPFKVAV

Sequences

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CDS sequence

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ATGCCATTTGGACTCTATAATGCTCCTAGCACTTTTATGAGGCTCATGAACCAAGTACTTCACCATTTCCTTAATAAATTTGTCATTGTTTATTTTGATGACATTTTGGT
TTTCAGCAGGACACTAGACGAACATCATGTGCATTTACAATTATTGTTCGAAGCTTTGGCCAAGAATGAATTATATATCAACCTCAAGAAATGCATCTTTTGCATGGAAG
AAATATCATTCTTGGGATTCATCATCAAGAAGAATCATATCCTAATGGATGAAAAGAAAGTTGAAGCTATAAAAAACTGGCCTATACCTAGTTTAGTAAAAGAAGTTCAA
ACATTTATTGGCTTAGCATCATTCTACAGGAAATTTATTCATAACTTCAGCACCATTGCTGCACCTATTACTGATTGCTTGAAGAAAGGAACCTTCCTATGGGGAAATAA
ACAACAAGACAGCTTTGAACTATTGAAGGAAAAGTTGAGTAACAATCCAATTTTGAAACTACCAGATTTTTCCCAACCATTTAAGGTTGCTGTAGATGCTCGTGGGATCG
GTATTGGAGCTGTCTTATCTCAATCAAGCCATCATATTGAACATTTTAGTGAGAAACTCGGTCCATCAAGGCATACATGGAGTACTTATGAACAAGAGATGTATGCCCTC
GTTTGTGCATTAAAACATTGGGAGCATTACCTACTGTCTAACGAGTTTCTCCTAATAACTGACCATTTCTCCCTAAAATATCTCCAAGCCCATAAATCTATCAACAAAAT
GCAAGCTAGATGGATCTCCTTTTTACAGAGATTCAACTTTGTTATCAAGCACAAAGCTGGAAAAGAAAACAGAGTGGTTGATGCACTAAGTAGAAAACATTCCCTACTTT
CTACACTATCAACAGAAGTAATGACATTCAAGCATCTACCAGACTTATATGAAGATGATGTTGACTTCAATAAGCCATGGTATAAATGCATTCATCATCCGGAAGCAGGA
GAATTTCATATTGTTGATGAATTTTTATTTAAAGAAAAAAATTATGCATACTCTACACTTCTCTAA

mRNA sequence

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Protein sequence

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MPFGLYNAPSTFMRLMNQVLHHFLNKFVIVYFDDILVFSRTLDEHHVHLQLLFEALAKNELYINLKKCIFCMEEISFLGFIIKKNHILMDEKKVEAIKNWPIPSLVKEVQ
TFIGLASFYRKFIHNFSTIAAPITDCLKKGTFLWGNKQQDSFELLKEKLSNNPILKLPDFSQPFKVAVDARGIGIGAVLSQSSHHIEHFSEKLGPSRHTWSTYEQEMYAL
VCALKHWEHYLLSNEFLLITDHFSLKYLQAHKSINKMQARWISFLQRFNFVIKHKAGKENRVVDALSRKHSLLSTLSTEVMTFKHLPDLYEDDVDFNKPWYKCIHHPEAG
EFHIVDEFLFKEKNYAYSTLL

Cmc09g0241621 (gene) of Melon (Charmono) v1.1 genome