; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0241671 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0241671
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr09:3846009..3849882
RNA-Seq ExpressionCmc09g0241671
SyntenyCmc09g0241671
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037551.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.8e-13982.47Show/hide
Query:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLF
        +KLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGY  EHKGFHCWDPLSNRL ISRHVTFWEHTMFSRLSSFHT FSSPQPFFTD TIDLF
Subjt:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLF

Query:  PPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRSTRFISCCC-----------CQA--------------------VASSQMDVKNAFLNGT
        P SESPLGNDLAQSAPTSATSDQLSISDGSPEPTP+TPPRRSTR                  QA                    +ASSQMDV NAFLNGT
Subjt:  PPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRSTRFISCCC-----------CQA--------------------VASSQMDVKNAFLNGT

Query:  LFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGNDPEAISDLQHYLGQHFE
        LFEEVYMKPPLGTS SPHKVCLLRRALYGLKQAPRAWFATF+STITQLCFT SPHDTALFTR TPQGIVLL LYVDDMIITGNDP+AISDLQHYLGQHFE
Subjt:  LFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGNDPEAISDLQHYLGQHFE

Query:  MKDLGSLN
        MKDLGSLN
Subjt:  MKDLGSLN

KAA0040517.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.5e-13476.85Show/hide
Query:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLF
        +KLYGTPPNY NLKTFGCACFVLLHPHEHTKLEPR RLCCFLGYG +HKGF CWDPLSNRL ISRHVTFWEHTMFS LSSFHTSFSSPQPFFTD +IDLF
Subjt:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLF

Query:  PPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRSTRF------------------ISCCCCQ-----------------------AVASS--
        PPSESPLGN+LAQSAPTSATSDQ SISDGSPEPTP+TPPRRSTR                   I C                           AVA++  
Subjt:  PPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRSTRF------------------ISCCCCQ-----------------------AVASS--

Query:  ----QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGND
            QMDVKNAFLNGTL EEVYMKPPLGTSS PHKVCLLRRALYGLKQAPRAWF TFSSTITQL FTSSPHDT LFTR TPQGIVLLLLYVDDMIITGND
Subjt:  ----QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGND

Query:  PEAISDLQHYLGQHFEMKDLGSLN
        P+AISDLQHYLGQHFEMKDLGSLN
Subjt:  PEAISDLQHYLGQHFEMKDLGSLN

KAA0051863.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.4e-13862.64Show/hide
Query:  SPNRTLLFSAPAPTLLNKMDVLNANIATFLTHSYIR--LYYQSSSFLHSSEHLSIQKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYG
        SP + LLFSAPAPTLLNKMDV +ANIATFLTHSYIR  +    SS L +      +KLY TPPNYSNLKTFGCACFVLLHPHEHTKLEP  RLCCFLGYG
Subjt:  SPNRTLLFSAPAPTLLNKMDVLNANIATFLTHSYIR--LYYQSSSFLHSSEHLSIQKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYG

Query:  AEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLFPPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRST--
         EHKGF CWDPLSNRL ISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTD +IDLFPPSESPLGN+LAQ APTSA SDQ SISDGSPEPT +TPPRRST  
Subjt:  AEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLFPPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRST--

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------RFISCCCCQAVASS------QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFT
               R  S     AVA++      QMDVKNAFLNGTL EEVYMKPP GTSS PHKVCLLRRALYGLKQAPRAWFATFSSTITQL FTSSPHDTALFT
Subjt:  -------RFISCCCCQAVASS------QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFT

Query:  RQTPQGIVLLLLYVDDMIITGNDPEAISDLQHYLGQHFEMKDLGSLN
        R TPQGIVLLLLYVDDMIITGND +AISDLQHYLGQHFEMKDLGSLN
Subjt:  RQTPQGIVLLLLYVDDMIITGNDPEAISDLQHYLGQHFEMKDLGSLN

KAA0064060.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]9.4e-13376.54Show/hide
Query:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLF
        +KLYGTP NYSNLKTFGCACFVLLHPHEHTKLEPR RLCCFLGYG EHKGF CWDPLSNRL ISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTD +I+LF
Subjt:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLF

Query:  PPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRSTRF------------------ISCCCCQ-----------------------AVASS--
        PPSE PLGN+LAQSAPTSAT DQ SISDGSPEPTPNTPPRRSTR                   I C                           AVA++  
Subjt:  PPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRSTRF------------------ISCCCCQ-----------------------AVASS--

Query:  ----QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGND
            QMDVKNAFLNGTL EEVYMKPP GTSS PHKVCLLRRALYGLKQAPRAWFATFSSTI QL FTSSPHDTALFTR TP+GIVLLLLYVDDMIITGND
Subjt:  ----QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGND

Query:  PEAISDLQHYLGQHFEMKDLGSLN
        P+AISDLQHYLGQHFEMKDLGSLN
Subjt:  PEAISDLQHYLGQHFEMKDLGSLN

TYK23446.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.5e-13476.85Show/hide
Query:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLF
        +KLYGTPPNY NLKTFGCACFVLLHPHEHTKLEPR RLCCFLGYG +HKGF CWDPLSNRL ISRHVTFWEHTMFS LSSFHTSFSSPQPFFTD +IDLF
Subjt:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLF

Query:  PPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRSTRF------------------ISCCCCQ-----------------------AVASS--
        PPSESPLGN+LAQSAPTSATSDQ SISDGSPEPTP+TPPRRSTR                   I C                           AVA++  
Subjt:  PPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRSTRF------------------ISCCCCQ-----------------------AVASS--

Query:  ----QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGND
            QMDVKNAFLNGTL EEVYMKPPLGTSS PHKVCLLRRALYGLKQAPRAWF TFSSTITQL FTSSPHDT LFTR TPQGIVLLLLYVDDMIITGND
Subjt:  ----QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGND

Query:  PEAISDLQHYLGQHFEMKDLGSLN
        P+AISDLQHYLGQHFEMKDLGSLN
Subjt:  PEAISDLQHYLGQHFEMKDLGSLN

TrEMBL top hitse value%identityAlignment
A0A5A7TG30 Retrovirus-related Pol polyprotein from transposon TNT 1-943.2e-13476.85Show/hide
Query:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLF
        +KLYGTPPNY NLKTFGCACFVLLHPHEHTKLEPR RLCCFLGYG +HKGF CWDPLSNRL ISRHVTFWEHTMFS LSSFHTSFSSPQPFFTD +IDLF
Subjt:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLF

Query:  PPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRSTRF------------------ISCCCCQ-----------------------AVASS--
        PPSESPLGN+LAQSAPTSATSDQ SISDGSPEPTP+TPPRRSTR                   I C                           AVA++  
Subjt:  PPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRSTRF------------------ISCCCCQ-----------------------AVASS--

Query:  ----QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGND
            QMDVKNAFLNGTL EEVYMKPPLGTSS PHKVCLLRRALYGLKQAPRAWF TFSSTITQL FTSSPHDT LFTR TPQGIVLLLLYVDDMIITGND
Subjt:  ----QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGND

Query:  PEAISDLQHYLGQHFEMKDLGSLN
        P+AISDLQHYLGQHFEMKDLGSLN
Subjt:  PEAISDLQHYLGQHFEMKDLGSLN

A0A5A7U7G4 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-13862.64Show/hide
Query:  SPNRTLLFSAPAPTLLNKMDVLNANIATFLTHSYIR--LYYQSSSFLHSSEHLSIQKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYG
        SP + LLFSAPAPTLLNKMDV +ANIATFLTHSYIR  +    SS L +      +KLY TPPNYSNLKTFGCACFVLLHPHEHTKLEP  RLCCFLGYG
Subjt:  SPNRTLLFSAPAPTLLNKMDVLNANIATFLTHSYIR--LYYQSSSFLHSSEHLSIQKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYG

Query:  AEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLFPPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRST--
         EHKGF CWDPLSNRL ISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTD +IDLFPPSESPLGN+LAQ APTSA SDQ SISDGSPEPT +TPPRRST  
Subjt:  AEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLFPPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRST--

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------RFISCCCCQAVASS------QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFT
               R  S     AVA++      QMDVKNAFLNGTL EEVYMKPP GTSS PHKVCLLRRALYGLKQAPRAWFATFSSTITQL FTSSPHDTALFT
Subjt:  -------RFISCCCCQAVASS------QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFT

Query:  RQTPQGIVLLLLYVDDMIITGNDPEAISDLQHYLGQHFEMKDLGSLN
        R TPQGIVLLLLYVDDMIITGND +AISDLQHYLGQHFEMKDLGSLN
Subjt:  RQTPQGIVLLLLYVDDMIITGNDPEAISDLQHYLGQHFEMKDLGSLN

A0A5A7V9Z8 Retrovirus-related Pol polyprotein from transposon TNT 1-944.6e-13376.54Show/hide
Query:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLF
        +KLYGTP NYSNLKTFGCACFVLLHPHEHTKLEPR RLCCFLGYG EHKGF CWDPLSNRL ISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTD +I+LF
Subjt:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLF

Query:  PPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRSTRF------------------ISCCCCQ-----------------------AVASS--
        PPSE PLGN+LAQSAPTSAT DQ SISDGSPEPTPNTPPRRSTR                   I C                           AVA++  
Subjt:  PPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRSTRF------------------ISCCCCQ-----------------------AVASS--

Query:  ----QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGND
            QMDVKNAFLNGTL EEVYMKPP GTSS PHKVCLLRRALYGLKQAPRAWFATFSSTI QL FTSSPHDTALFTR TP+GIVLLLLYVDDMIITGND
Subjt:  ----QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGND

Query:  PEAISDLQHYLGQHFEMKDLGSLN
        P+AISDLQHYLGQHFEMKDLGSLN
Subjt:  PEAISDLQHYLGQHFEMKDLGSLN

A0A5D3BTS2 Putative mitochondrial protein8.6e-14082.47Show/hide
Query:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLF
        +KLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGY  EHKGFHCWDPLSNRL ISRHVTFWEHTMFSRLSSFHT FSSPQPFFTD TIDLF
Subjt:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLF

Query:  PPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRSTRFISCCC-----------CQA--------------------VASSQMDVKNAFLNGT
        P SESPLGNDLAQSAPTSATSDQLSISDGSPEPTP+TPPRRSTR                  QA                    +ASSQMDV NAFLNGT
Subjt:  PPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRSTRFISCCC-----------CQA--------------------VASSQMDVKNAFLNGT

Query:  LFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGNDPEAISDLQHYLGQHFE
        LFEEVYMKPPLGTS SPHKVCLLRRALYGLKQAPRAWFATF+STITQLCFT SPHDTALFTR TPQGIVLL LYVDDMIITGNDP+AISDLQHYLGQHFE
Subjt:  LFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGNDPEAISDLQHYLGQHFE

Query:  MKDLGSLN
        MKDLGSLN
Subjt:  MKDLGSLN

A0A5D3DIH5 Retrovirus-related Pol polyprotein from transposon TNT 1-943.2e-13476.85Show/hide
Query:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLF
        +KLYGTPPNY NLKTFGCACFVLLHPHEHTKLEPR RLCCFLGYG +HKGF CWDPLSNRL ISRHVTFWEHTMFS LSSFHTSFSSPQPFFTD +IDLF
Subjt:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLF

Query:  PPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRSTRF------------------ISCCCCQ-----------------------AVASS--
        PPSESPLGN+LAQSAPTSATSDQ SISDGSPEPTP+TPPRRSTR                   I C                           AVA++  
Subjt:  PPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRSTRF------------------ISCCCCQ-----------------------AVASS--

Query:  ----QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGND
            QMDVKNAFLNGTL EEVYMKPPLGTSS PHKVCLLRRALYGLKQAPRAWF TFSSTITQL FTSSPHDT LFTR TPQGIVLLLLYVDDMIITGND
Subjt:  ----QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGND

Query:  PEAISDLQHYLGQHFEMKDLGSLN
        P+AISDLQHYLGQHFEMKDLGSLN
Subjt:  PEAISDLQHYLGQHFEMKDLGSLN

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.0e-2041.32Show/hide
Query:  QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALF--TRQTPQGIVLLLLYVDDMIITGNDPE
        QMDVK AFLNGTL EE+YM+ P G S +   VC L +A+YGLKQA R WF  F   + +  F +S  D  ++   +      + +LLYVDD++I   D  
Subjt:  QMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALF--TRQTPQGIVLLLLYVDDMIITGNDPE

Query:  AISDLQHYLGQHFEMKDLGSL
         +++ + YL + F M DL  +
Subjt:  AISDLQHYLGQHFEMKDLGSL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.7e-2145Show/hide
Query:  QMDVKNAFLNGTLFEEVYMKPPLG--TSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTAL-FTRQTPQGIVLLLLYVDDMIITGNDP
        Q+DVK AFL+G L EE+YM+ P G   +   H VC L ++LYGLKQAPR W+  F S +    +  +  D  + F R +    ++LLLYVDDM+I G D 
Subjt:  QMDVKNAFLNGTLFEEVYMKPPLG--TSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTAL-FTRQTPQGIVLLLLYVDDMIITGNDP

Query:  EAISDLQHYLGQHFEMKDLG
          I+ L+  L + F+MKDLG
Subjt:  EAISDLQHYLGQHFEMKDLG

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.4e-0731.2Show/hide
Query:  NYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLFPPSESPLG
        +YS+LK FGC  F  +   + TKL+ +   C F+GYG E  G+  WDP+  ++  SR V F E  + +         +   P F  I      PS S   
Subjt:  NYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLFPPSESPLG

Query:  NDLAQSAPTSATSDQLSISDGSPEP
             + PTSA S    +S+   +P
Subjt:  NDLAQSAPTSATSDQLSISDGSPEP

P25600 Putative transposon Ty5-1 protein YCL074W5.4e-1433.88Show/hide
Query:  MDVKNAFLNGTLFEEVYMKPPLG--TSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGNDPEA
        MDV  AFLN T+ E +Y+K P G     +P  V  L   +YGLKQAP  W    ++T+ ++ F     +  L+ R T  G + + +YVDD+++    P+ 
Subjt:  MDVKNAFLNGTLFEEVYMKPPLG--TSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGNDPEA

Query:  ISDLQHYLGQHFEMKDLGSLN
           ++  L + + MKDLG ++
Subjt:  ISDLQHYLGQHFEMKDLGSLN

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.2e-2448.72Show/hide
Query:  QMDVKNAFLNGTLFEEVYMKPPLG--TSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGNDPE
        Q+DV NAFL GTL ++VYM  P G      P+ VC LR+ALYGLKQAPRAW+    + +  + F +S  DT+LF  Q  + IV +L+YVDD++ITGNDP 
Subjt:  QMDVKNAFLNGTLFEEVYMKPPLG--TSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGNDPE

Query:  AISDLQHYLGQHFEMKD
         + +    L Q F +KD
Subjt:  AISDLQHYLGQHFEMKD

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.0e-1347.22Show/hide
Query:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEH
        QKL+GT PNY  L+ FGCAC+  L P+   KL+ + R C FLGY      + C    ++RL+ISRHV F E+
Subjt:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEH

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.4e-2246.15Show/hide
Query:  QMDVKNAFLNGTLFEEVYMKPPLG--TSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGNDPE
        Q+DV NAFL GTL +EVYM  P G      P  VC LR+A+YGLKQAPRAW+    + +  + F +S  DT+LF  Q  + I+ +L+YVDD++ITGND  
Subjt:  QMDVKNAFLNGTLFEEVYMKPPLG--TSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGNDPE

Query:  AISDLQHYLGQHFEMKD
         +      L Q F +K+
Subjt:  AISDLQHYLGQHFEMKD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.3e-1235.21Show/hide
Query:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQ--------PFF
        QKL+G PPNY  LK FGCAC+  L P+   KLE + + C F+GY      + C    + RL+ SRHV F E       ++F  S S  Q        P  
Subjt:  QKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYGAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQ--------PFF

Query:  TDI-TIDLFPPSESPLGNDL-----AQSAPTSATSDQLSISD
        T + T  L  P+   LG  L       S+P+   + Q+S S+
Subjt:  TDI-TIDLFPPSESPLGNDL-----AQSAPTSATSDQLSISD

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.5e-2243.2Show/hide
Query:  QMDVKNAFLNGTLFEEVYMKPP------LGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITG
        Q+D+ NAFLNG L EE+YMK P       G S  P+ VC L++++YGLKQA R WF  FS T+    F  S  D   F + T    + +L+YVDD+II  
Subjt:  QMDVKNAFLNGTLFEEVYMKPP------LGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITG

Query:  NDPEAISDLQHYLGQHFEMKDLGSL
        N+  A+ +L+  L   F+++DLG L
Subjt:  NDPEAISDLQHYLGQHFEMKDLGSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTGGAGTATAAAGACTCCACTCTTCTATCTTTTCTCTCCCAACAGGACACTCTTGTTCAGCGCTCCTGCCCCCACACTTCTCAACAAAATGGACGTGCTAAACGC
AAACATCGCCACATTCTTGACTCACTCTTACATTCGTCTATACTATCAATCGTCTTCCTTCCTCCATTCTTCAGAACATCTCTCCATTCAAAAATTATATGGTACTCCTC
CCAACTATTCTAATCTTAAAACCTTCGGTTGTGCCTGCTTTGTTCTTCTGCATCCTCATGAACACACTAAACTTGAACCACGTGTCCGCCTCTGTTGTTTTCTTGGCTAT
GGCGCAGAACATAAAGGTTTTCATTGTTGGGATCCCCTTTCCAATAGACTTCATATATCTCGCCATGTCACATTTTGGGAGCACACTATGTTCTCTCGTTTGTCCTCCTT
CCACACCTCCTTCTCTAGTCCTCAACCTTTCTTCACTGACATAACTATTGACCTTTTTCCTCCCTCTGAGTCCCCTCTTGGTAATGATCTTGCTCAATCTGCACCTACTT
CGGCAACCTCGGACCAATTGTCCATCTCTGATGGTAGTCCTGAACCTACTCCAAACACCCCTCCTCGTCGTTCTACTCGGTTTATTAGCTGTTGCTGCTGCCAAGCAGTG
GCCTCTTCTCAGATGGATGTTAAAAATGCTTTTCTTAATGGGACTCTTTTTGAAGAAGTGTATATGAAGCCACCTCTTGGTACTTCTTCTTCTCCTCACAAGGTGTGTCT
CTTGCGTCGCGCACTATATGGCCTCAAACAGGCTCCACGAGCTTGGTTTGCCACATTTAGCTCTACCATTACTCAACTTTGTTTTACTTCTAGTCCTCATGACACTGCGC
TCTTTACTCGCCAAACACCCCAGGGAATTGTTCTCCTTCTTCTCTATGTTGATGACATGATTATCACTGGTAATGATCCAGAGGCCATATCCGATCTCCAACATTACCTT
GGTCAACATTTTGAAATGAAAGACCTTGGATCTCTTAACTAA
mRNA sequenceShow/hide mRNA sequence
GTGTAAATATACAAGAAAAATATTCAATAATAACTTTACATGGTATCAGAGCCATCTTTAACCTAGGTTACTGTTCCATCCGCCGCCGCTGCAACCCATCCGCCGCCGCT
GCAGCCCATCCGATGCCGTCGATACCCATCCGACGCCCGCGTCTTCTCTGTGCCTTTCAGATCTTCGAAGTCGCGCCAGTTTGTGCGCGTGCGAGCCGGTCTCCGTGAAA
CCTAGTCGAACCCGAGCCACTGCATCAGTCGAAGCTTAGTCGCATCACGCTCCAGTCTCCGACCTCCTTCGACGCTTCGATCTCCGTGAAATCGGTCTCCAGCCGTCCGA
AGCCGAAAGTCGAAAATCGCTCCGTCAGATCTCTTCGTGTTTCGTCTTCGCGTGCCTATCCGACCCGAAAGCCGAGCGTGCGTCTCTATTAGATTCGACGCCGTCTCCTC
ACAGACCCGAAGTCGAAATCTGAGCGTGCATCTCCATCTCCGTGAGACCTGAATCCGAAACCCGCTCCGTCTCCTGTTTCCTTACGCCAAAAACCGACCCGAAACCGCGC
CCAGCCCTAGCCTGAAACCCGAATCCGAAACCCGCTCATCTTCTGTTTCCTCACACCAAAACCCGACCCAAACCCGTGTCCAGCCCCTAGCCTGAAACCCGACCCGAAAA
CCCCCTCCTTTTATTTATATATTTATTTAATTATTATTGCTCGCTGACTTGGTTTCTTCTTGTAAGTAGATGGAGAAAAGTGAAATTGCTTGTCCAATTAGCACAATTCT
TGATGGCTCTAATTATATTACATGGGCAAATTAAATAAAAAGCTTCTTAATTGGACGAAAATTATGGCGTACTGTCACGGGTGATATTGCCAAACCGACCAAACAAGACA
AGGAAGATGATGGAAAATTTATCGAACGCCTTGAAGAATGGGACAACAAAAATCATCAGATTATCACCTGGCTTAGTAACACATCAACTCCTGCTATCCATACACAATTT
GATGCTTTTGAAAGTGCTAAGGAGTTATGGGATTTTCTGTCTATACGATTTAAGTTCGTCGGATTAGCGTATACTATCAGTTGCACAATAATCTTGTTAATCTTAATCAA
GAAGCTGGACAATCAGTTAATGAATATCTAGCCGTGCTTCAACCTATCTGGACTCAACTTGATCAAGCTAAAATCAGTAAAGATCATCTTCGTCTTATTAAAGTCCTTAT
GGGACTTCGTCCAGAATATGAAGCTGTTAGGGCTGCCTTGTTACATCGCAGTCCCTTGCCCTCATTGGATGCTGCTATCCAAGAAATATTATTTGAAGAAAAACGTCTTG
GCATCAATCTCTCTAAACATTCTGATGTTGTTCTTGCCAGCACTTATTCACCACCTGGAGCTTTTGTAAGAATTGTAAGCTCACTGGTCATAAATTTATTGATTGTCCTA
AAATAGAATGCAGGTACTGCCATAAACCAGGTCATATTCTGGATAAGTCCCATAAAACCATATCGACCTCGAAGCTATTCTACAAGAGCAAGAACTTCACTAAACCCAGG
AACTCCTCTGTTGTTGCTGCTACTTCAGATATCCTACCACCCCCAGTTTTAGATAAGTGATCTCCAAAGTTTGTTAAATCAGTTAATTTCATCATCTTCCTCTGCATTTG
CCATCTCACTAGGTTCAGGATCCGCAGACGGGACAGACGATTGGGACGGGTCGCAAAGTGGGAAGATTGTTTGAGCTCCTATCACTTCAGGTCCCTTCTCCTTCCTCCAT
CTCTGCCCCTGTCACTGACTCTGATACATATCAGTGGCATCTTCGTCTTGGTCATGCCTCTTCAGAAAAGTTGCGTCATTTAATTTCTATTAACCATTTAAATAGTACTA
CCAAGTTTGTCCCTTTTAATTGTTTAAATTGCAAACTTGCTAAGCAATCTGCTTTGTCTTTTTCTACATCCATTTCTACATCTGATAAACCTTTTGATTTAATCCATTCT
GACATTTAGGGCCCTGCCCCTACCTCCACTGTCCATGGTTATCGCTATTATGTTTTATTTATTTATGACTTCTCTCGATTTACATGGATTTACTTTCTCAAACATCGCTC
TGAATTATCTCGCACTTATATTGAGTTTGCTAATATGATTCGCACCCAATTCTCTTGTCCCATCAAAACCCTTCGCACCGATAATGCCTTGGAGTATAAAGACTCCACTC
TTCTATCTTTTCTCTCCCAACAGGACACTCTTGTTCAGCGCTCCTGCCCCCACACTTCTCAACAAAATGGACGTGCTAAACGCAAACATCGCCACATTCTTGACTCACTC
TTACATTCGTCTATACTATCAATCGTCTTCCTTCCTCCATTCTTCAGAACATCTCTCCATTCAAAAATTATATGGTACTCCTCCCAACTATTCTAATCTTAAAACCTTCG
GTTGTGCCTGCTTTGTTCTTCTGCATCCTCATGAACACACTAAACTTGAACCACGTGTCCGCCTCTGTTGTTTTCTTGGCTATGGCGCAGAACATAAAGGTTTTCATTGT
TGGGATCCCCTTTCCAATAGACTTCATATATCTCGCCATGTCACATTTTGGGAGCACACTATGTTCTCTCGTTTGTCCTCCTTCCACACCTCCTTCTCTAGTCCTCAACC
TTTCTTCACTGACATAACTATTGACCTTTTTCCTCCCTCTGAGTCCCCTCTTGGTAATGATCTTGCTCAATCTGCACCTACTTCGGCAACCTCGGACCAATTGTCCATCT
CTGATGGTAGTCCTGAACCTACTCCAAACACCCCTCCTCGTCGTTCTACTCGGTTTATTAGCTGTTGCTGCTGCCAAGCAGTGGCCTCTTCTCAGATGGATGTTAAAAAT
GCTTTTCTTAATGGGACTCTTTTTGAAGAAGTGTATATGAAGCCACCTCTTGGTACTTCTTCTTCTCCTCACAAGGTGTGTCTCTTGCGTCGCGCACTATATGGCCTCAA
ACAGGCTCCACGAGCTTGGTTTGCCACATTTAGCTCTACCATTACTCAACTTTGTTTTACTTCTAGTCCTCATGACACTGCGCTCTTTACTCGCCAAACACCCCAGGGAA
TTGTTCTCCTTCTTCTCTATGTTGATGACATGATTATCACTGGTAATGATCCAGAGGCCATATCCGATCTCCAACATTACCTTGGTCAACATTTTGAAATGAAAGACCTT
GGATCTCTTAACTAA
Protein sequenceShow/hide protein sequence
MPWSIKTPLFYLFSPNRTLLFSAPAPTLLNKMDVLNANIATFLTHSYIRLYYQSSSFLHSSEHLSIQKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGY
GAEHKGFHCWDPLSNRLHISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDITIDLFPPSESPLGNDLAQSAPTSATSDQLSISDGSPEPTPNTPPRRSTRFISCCCCQAV
ASSQMDVKNAFLNGTLFEEVYMKPPLGTSSSPHKVCLLRRALYGLKQAPRAWFATFSSTITQLCFTSSPHDTALFTRQTPQGIVLLLLYVDDMIITGNDPEAISDLQHYL
GQHFEMKDLGSLN