; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0241811 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0241811
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr09:4008353..4009093
RNA-Seq ExpressionCmc09g0241811
SyntenyCmc09g0241811
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.3e-12599.12Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGA LFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREK+LYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPISATEVRSFLG
        VSVDPQKVEAVVNWERPISATEVRSFLG
Subjt:  VSVDPQKVEAVVNWERPISATEVRSFLG

KAA0036676.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.1e-12699.56Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREK+LYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPISATEVRSFLG
        VSVDPQKVEAVVNWERPISATEVRSFLG
Subjt:  VSVDPQKVEAVVNWERPISATEVRSFLG

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.1e-12699.56Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREK+LYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPISATEVRSFLG
        VSVDPQKVEAVVNWERPISATEVRSFLG
Subjt:  VSVDPQKVEAVVNWERPISATEVRSFLG

KAA0062270.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.1e-12699.56Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREK+LYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPISATEVRSFLG
        VSVDPQKVEAVVNWERPISATEVRSFLG
Subjt:  VSVDPQKVEAVVNWERPISATEVRSFLG

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.1e-12699.56Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREK+LYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPISATEVRSFLG
        VSVDPQKVEAVVNWERPISATEVRSFLG
Subjt:  VSVDPQKVEAVVNWERPISATEVRSFLG

TrEMBL top hitse value%identityAlignment
A0A5A7T3K4 Reverse transcriptase3.0e-12699.56Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREK+LYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPISATEVRSFLG
        VSVDPQKVEAVVNWERPISATEVRSFLG
Subjt:  VSVDPQKVEAVVNWERPISATEVRSFLG

A0A5A7U2V7 Reverse transcriptase1.1e-12599.12Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGA LFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREK+LYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPISATEVRSFLG
        VSVDPQKVEAVVNWERPISATEVRSFLG
Subjt:  VSVDPQKVEAVVNWERPISATEVRSFLG

A0A5A7U819 Reverse transcriptase3.0e-12699.56Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREK+LYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPISATEVRSFLG
        VSVDPQKVEAVVNWERPISATEVRSFLG
Subjt:  VSVDPQKVEAVVNWERPISATEVRSFLG

A0A5A7V4W9 Reverse transcriptase3.0e-12699.56Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREK+LYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPISATEVRSFLG
        VSVDPQKVEAVVNWERPISATEVRSFLG
Subjt:  VSVDPQKVEAVVNWERPISATEVRSFLG

A0A5A7VNK4 Reverse transcriptase3.0e-12699.56Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAK

Query:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG
        TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREK+LYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPISATEVRSFLG
        VSVDPQKVEAVVNWERPISATEVRSFLG
Subjt:  VSVDPQKVEAVVNWERPISATEVRSFLG

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.2e-4737.44Show/hide
Query:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGT-----LRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKT
        +E++ Q+Q+++++G IR S SP+ +P+  V KK         R+ IDYR+LN++T+ +++P+P +D++  +L     F+ IDL  G+HQ+++    ++KT
Subjt:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGT-----LRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKT

Query:  AFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKGV
        AF T++GHYE+  MPFGL NAPA F   MN I    L++  +V++DDI+V+S   + H + L +V + L +  L  +  KCEF  ++  FLGHV++  G+
Subjt:  AFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKGV

Query:  SVDPQKVEAVVNWERPISATEVRSFLG
          +P+K+EA+  +  P    E+++FLG
Subjt:  SVDPQKVEAVVNWERPISATEVRSFLG

P20825 Retrovirus-related Pol polyprotein from transposon 2973.5e-4739.82Show/hide
Query:  ELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKD-----GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTA
        E++ Q+QE++++G IR S SP+ +P   V KK         R+ IDYR+LN++TI ++YP+P +D++  +L     F+ IDL  G+HQ+++ E  I+KTA
Subjt:  ELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKD-----GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTA

Query:  FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKGVS
        F T+ GHYE+  MPFGL NAPA F   MN I    L++  +V++DDI+++S     H   +++V   L +  L  +  KCEF  ++  FLGH+V+  G+ 
Subjt:  FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKGVS

Query:  VDPQKVEAVVNWERPISATEVRSFLG
         +P KV+A+V++  P    E+R+FLG
Subjt:  VDPQKVEAVVNWERPISATEVRSFLG

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein7.7e-4742.79Show/hide
Query:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTR
        +E+   +Q+L+D  +I PS SP  +PV+ V KKDGT RLC+DYR LNK TI + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KTAF T 
Subjt:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTR

Query:  YGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQ
         G YE+ VMPFGL NAP+ F   M   F     +FV V++DDIL++S   E H +HL  VL+ L+ + L  K  KC+F  E+  FLG+ +  + ++    
Subjt:  YGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQ

Query:  KVEAVVNWERPISATEVRSFLG
        K  A+ ++  P +  + + FLG
Subjt:  KVEAVVNWERPISATEVRSFLG

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus7.7e-4741.59Show/hide
Query:  ELKMQLQELVDKGYIRPSVSPWGAPVLFVKKK-----DGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTA
        E++ Q+ EL+  G IRPS SP+ +P+  V KK     +   R+ +D+++LN VTI + YP+P I+     L  A  F+ +DL SG+HQ+ ++ESDI KTA
Subjt:  ELKMQLQELVDKGYIRPSVSPWGAPVLFVKKK-----DGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTA

Query:  FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKGVS
        F T  G YEF  +PFGL NAPA+F  +++ I   ++ +   V+IDDI+V+S D ++H ++LR+VL +L +  L     K  F   QV FLG++V+A G+ 
Subjt:  FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKGVS

Query:  VDPQKVEAVVNWERPISATEVRSFLG
         DP+KV A+     P S  E++ FLG
Subjt:  VDPQKVEAVVNWERPISATEVRSFLG

Q99315 Transposon Ty3-G Gag-Pol polyprotein7.7e-4742.79Show/hide
Query:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTR
        +E+   +Q+L+D  +I PS SP  +PV+ V KKDGT RLC+DYR LNK TI + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KTAF T 
Subjt:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTR

Query:  YGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQ
         G YE+ VMPFGL NAP+ F   M   F     +FV V++DDIL++S   E H +HL  VL+ L+ + L  K  KC+F  E+  FLG+ +  + ++    
Subjt:  YGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQ

Query:  KVEAVVNWERPISATEVRSFLG
        K  A+ ++  P +  + + FLG
Subjt:  KVEAVVNWERPISATEVRSFLG

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein8.2e-1246.38Show/hide
Query:  HLRIVLQTLREKKLYAKFSKCEFWLEQVVFLG--HVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLG
        HL +VLQ   + + YA   KC F   Q+ +LG  H++S +GVS DP K+EA+V W  P + TE+R FLG
Subjt:  HLRIVLQTLREKKLYAKFSKCEFWLEQVVFLG--HVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCAAGCGAGCTAAAAGAATTGAAGATGCAGTTACAGGAACTAGTTGACAAGGGATACATCAGGCCTAGTGTTTCGCCGTGGGGAGCACCAGTGCTTTTTGTGAA
AAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGCTAAACAAGGTTACAATACGTAACAAGTATCCTTTACCACGCATCGATGACTTATTTGATCAACTAA
GGGGAGCAACGTTGTTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAGCATTTAGAACGAGGTATGGGCATTAT
GAGTTTCGAGTTATGCCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCGGTATTTAGATCAGTTTGTGATTGTGTTCATTGA
TGATATATTAGTTTACTCAGTTGACAGAGAATCTCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGAAAAAAAGTTATACGCTAAGTTCAGCAAATGTGAGT
TCTGGTTGGAACAGGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAATTAGTGCG
ACAGAAGTACGTAGTTTCCTGGGTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCTCGATTGGCATTGCCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCAAGCGAGCTAAAAGAATTGAAGATGCAGTTACAGGAACTAGTTGACAAGGGATACATCAGGCCTAGTGTTTCGCCGTGGGGAGCACCAGTGCTTTTTGTGAA
AAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGCTAAACAAGGTTACAATACGTAACAAGTATCCTTTACCACGCATCGATGACTTATTTGATCAACTAA
GGGGAGCAACGTTGTTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAGCATTTAGAACGAGGTATGGGCATTAT
GAGTTTCGAGTTATGCCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCGGTATTTAGATCAGTTTGTGATTGTGTTCATTGA
TGATATATTAGTTTACTCAGTTGACAGAGAATCTCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGAAAAAAAGTTATACGCTAAGTTCAGCAAATGTGAGT
TCTGGTTGGAACAGGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAATTAGTGCG
ACAGAAGTACGTAGTTTCCTGGGTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCTCGATTGGCATTGCCTTTGA
Protein sequenceShow/hide protein sequence
MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHY
EFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKKLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISA
TEVRSFLGWQDTIGVLLRISLDWHCL