CuGenDBv2

Gene ID	Cmc09g0241831
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA-directed RNA polymerase subunit alpha
Genome location	CMiso1.1chr09:4052078..4052473
RNA-Seq Expression	Cmc09g0241831
Synteny	Cmc09g0241831
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0000428 - DNA-directed RNA polymerase complex (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR011773 - DNA-directed RNA polymerase, alpha subunit IPR036603 - RNA polymerase, RBP11-like subunit IPR036643 - DNA-directed RNA polymerase, insert domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QHB75996.1 RNA polymerase alpha subunit [Cucumis melo subsp. melo]

6.5e-58

86.26

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Query:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS
        MNLKEIVLR+NLYGTRDASICVKGP  V AQDIILPP VEIVDNTQHIANL EP+N CIE KIERN GYHIQT  NFQDASYPMDAIFM VRNVNHSIHS
Subjt:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS

Query:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS
        Y+NGNEKQ  LFLEIWTNGS TPKEALHE S
Subjt:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS

QJF46416.1 RNA polymerase alpha subunit [Cucumis melo]

1.3e-58

87.02

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Query:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS
        MNLKEIVLR+NLYGTRDASICVKGP  V AQDIILPP VEIVDNTQHIANL EP+NFCIE KIERN GYHIQT  NFQDASYPMDAIFM VRNVNHSIHS
Subjt:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS

Query:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS
        Y+NGNEKQ  LFLEIWTNGS TPKEALHE S
Subjt:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS

YP_004841815.1 RNA polymerase alpha subunit [Cucumis melo subsp. melo]

1.3e-58

87.02

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Query:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS
        MNLKEIVLR+NLYGTRDASICVKGP  V AQDIILPP VEIVDNTQHIANL EP+NFCIE KIERN GYHIQT  NFQDASYPMDAIFM VRNVNHSIHS
Subjt:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS

Query:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS
        Y+NGNEKQ  LFLEIWTNGS TPKEALHE S
Subjt:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS

YP_009004075.1 RNA polymerase alpha subunit [Cucumis hystrix]

1.3e-58

87.02

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Query:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS
        MNLKEIVLR+NLYGTRDASICVKGP  V AQDIILPP VEIVDNTQHIANLMEP+N CIE KIERN GYHIQT  NFQDASYPMDAIFM VRNVNHSIHS
Subjt:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS

Query:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS
        Y+NGNEKQ  LFLEIWTNGS TPKEALHE S
Subjt:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS

YP_009346515.1 RNA polymerase alpha subunit [Cucumis x hytivus]

1.3e-58

87.02

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Query:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS
        MNLKEIVLR+NLYGTRDASICVKGP  V AQDIILPP VEIVDNTQHIANLMEP+N CIE KIERN GYHIQT  NFQDASYPMDAIFM VRNVNHSIHS
Subjt:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS

Query:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS
        Y+NGNEKQ  LFLEIWTNGS TPKEALHE S
Subjt:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS

TrEMBL top hits

e value

%identity

Alignment

A0A1X9Q1P4 DNA-directed RNA polymerase subunit alpha

6.3e-59

87.02

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Query:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS
        MNLKEIVLR+NLYGTRDASICVKGP  V AQDIILPP VEIVDNTQHIANLMEP+N CIE KIERN GYHIQT  NFQDASYPMDAIFM VRNVNHSIHS
Subjt:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS

Query:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS
        Y+NGNEKQ  LFLEIWTNGS TPKEALHE S
Subjt:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS

A0A218KG62 DNA-directed RNA polymerase subunit alpha

6.3e-59

87.02

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Query:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS
        MNLKEIVLR+NLYGTRDASICVKGP  V AQDIILPP VEIVDNTQHIANLMEP+N CIE KIERN GYHIQT  NFQDASYPMDAIFM VRNVNHSIHS
Subjt:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS

Query:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS
        Y+NGNEKQ  LFLEIWTNGS TPKEALHE S
Subjt:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS

A0A249RXS6 DNA-directed RNA polymerase subunit alpha

6.3e-59

87.02

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Query:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS
        MNLKEIVLR+NLYGTRDASICVKGP  V AQDIILPP VEIVDNTQHIANL EP+NFCIE KIERN GYHIQT  NFQDASYPMDAIFM VRNVNHSIHS
Subjt:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS

Query:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS
        Y+NGNEKQ  LFLEIWTNGS TPKEALHE S
Subjt:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS

A0A249RZB5 DNA-directed RNA polymerase subunit alpha

6.3e-59

87.02

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Query:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS
        MNLKEIVLR+NLYGTRDASICVKGP  V AQDIILPP VEIVDNTQHIANL EP+NFCIE KIERN GYHIQT  NFQDASYPMDAIFM VRNVNHSIHS
Subjt:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS

Query:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS
        Y+NGNEKQ  LFLEIWTNGS TPKEALHE S
Subjt:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS

A0A286NFR2 DNA-directed RNA polymerase subunit alpha

6.3e-59

87.02

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Query:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS
        MNLKEIVLR+NLYGTRDASICVKGP  V AQDIILPP VEIVDNTQHIANL EP+NFCIE KIERN GYHIQT  NFQDASYPMDAIFM VRNVNHSIHS
Subjt:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS

Query:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS
        Y+NGNEKQ  LFLEIWTNGS TPKEALHE S
Subjt:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS

SwissProt top hits

e value

%identity

Alignment

Q09WY5 DNA-directed RNA polymerase subunit alpha

1.3e-56

79.39

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Query:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS
        MNLKEIVLR+NLYGTRDASICVKGP YV AQDIILPP VEIVDNTQHIANL EP+  CIE +IERN GY I+T  NFQ+ SYP+DA+FM VRN NHSIHS
Subjt:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS

Query:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS
        Y+NGNE Q  LFLEIWTNGS TPKEALHE S
Subjt:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS

Q2PMQ3 DNA-directed RNA polymerase subunit alpha

8.8e-58

81.68

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Query:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS
        MNLKEIVLR+NLYGTRDASIC KGP YV AQDIILPP VEIVDNTQHIAN+ EP+N CIE KIERN GY I+T KNFQD SYP+DA FM VRNVNHSIHS
Subjt:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS

Query:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS
        Y+NGNEKQ  LFLEIWTNGS TPKEAL+E S
Subjt:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS

Q49KW6 DNA-directed RNA polymerase subunit alpha

4.1e-55

79.39

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Query:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS
        MNLKEIVLR+NLYGTR+ASICVKGP  V AQDIILP  VEIVDNTQ+IANL EP+N CI  +IERN GYHI+T KNFQD SYP+DA+FM VRN NHSIHS
Subjt:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS

Query:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS
        Y NGNEKQ  LFLEIWTNGS TPKEALHE S
Subjt:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS

Q4VZK3 DNA-directed RNA polymerase subunit alpha

1.7e-61

87.02

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Query:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS
        MNLKEIVLR+NLYGTRDASICVKGP  V AQDIILPP VEIVDNTQHIANLMEP+N CIE KIERN GYHIQT  NFQDASYPMDAIFM VRNVNHSIHS
Subjt:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS

Query:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS
        Y+NGNEKQ  LFLEIWTNGS TPKEALHE S
Subjt:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS

Q8S8V9 DNA-directed RNA polymerase subunit alpha

5.3e-55

77.86

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Query:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS
        MNLKEIVLR+NLYGT +AS+CVKGP YV AQDIILPP VEIVDNTQHIA+L EP++FCI  +IERN GY I+T +NFQD SYP+DA+FM VRN NHSIHS
Subjt:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS

Query:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS
        Y NGNEKQ  LFLEIWTNGS TPKEALHE S
Subjt:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00740.1 RNA polymerase subunit alpha

3.0e-53

72.52

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Query:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS
        MNL EIVLR+NLYGTR+A ICV+GP Y+ A+DIILPP VEI+DNTQHIA L EP++ CIE KIERN GY ++ S NF+D SYP+DA+FM V N NHSIHS
Subjt:  MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHS

Query:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS
        Y NGNEKQ  LFLEIWTNGS TPKEALH+ S
Subjt:  YINGNEKQGRLFLEIWTNGSFTPKEALHETS

Sequences

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CDS sequence

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ATGAATTTGAAAGAAATTGTATTGAGAAATAATCTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTAGATACGTAGCTGCTCAAGACATCATCTTACCACC
TTTGGTGGAAATCGTTGATAATACACAACATATAGCTAACCTAATGGAACCAATGAATTTTTGTATTGAATTCAAGATTGAGAGGAATCATGGATATCATATACAAACGT
CAAAGAATTTTCAAGACGCAAGTTATCCTATGGATGCTATATTCATGTCTGTTCGAAATGTTAATCATAGTATTCATTCTTATATAAATGGGAATGAAAAACAAGGTAGA
CTTTTTCTCGAAATATGGACCAATGGAAGTTTCACTCCTAAAGAAGCACTTCATGAAACCTCTTGA

mRNA sequence

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Protein sequence

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MNLKEIVLRNNLYGTRDASICVKGPRYVAAQDIILPPLVEIVDNTQHIANLMEPMNFCIEFKIERNHGYHIQTSKNFQDASYPMDAIFMSVRNVNHSIHSYINGNEKQGR
LFLEIWTNGSFTPKEALHETS

Cmc09g0241831 (gene) of Melon (Charmono) v1.1 genome