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Cmc09g0242171 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0242171
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase domain-containing protein
Genome locationCMiso1.1chr09:4495421..4495765
RNA-Seq ExpressionCmc09g0242171
SyntenyCmc09g0242171
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037824.1 uncharacterized protein E6C27_scaffold113G00050 [Cucumis melo var. makuwa]2.9e-4686.84Show/hide
Query:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF
        MIFCAADEPSLSFVRETLQKFGEL  L A LGKSSIFVVGGSNE  S +AA+MGFVLGNLPVRYLGLPLLTGRLHPN CAPL++RITSRIRSWT RVLS+
Subjt:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF

Query:  AGRLQLVRFVLRSL
         GRLQLVRFVLRSL
Subjt:  AGRLQLVRFVLRSL

KAA0042317.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]3.7e-4179.82Show/hide
Query:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF
        MIFC ADEPSLSFVRETLQKFGEL  L+A LGK SIFV G +NE  S LAANMGF+LGNLPVRYL LPLLTGRL P+ CAPL++RITSRIRSW ARVLSF
Subjt:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF

Query:  AGRLQLVRFVLRSL
        AGR QLVR V RSL
Subjt:  AGRLQLVRFVLRSL

KAA0059752.1 F17F8.5 [Cucumis melo var. makuwa]1.3e-3878.95Show/hide
Query:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF
        MIFCAADEPS+ F+RE LQKFGELS LFA   KSSIFV G +NE  S LAA MGFV GNLP+RYLGLPLL GRL  N  APL++RITSRIRSWTARVLSF
Subjt:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF

Query:  AGRLQLVRFVLRSL
        AGRLQLVRFVLRSL
Subjt:  AGRLQLVRFVLRSL

KAA0062333.1 putative reverse transcriptase [Cucumis melo var. makuwa]1.4e-3774.56Show/hide
Query:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF
        MIFCAADE SL F+RE LQKFGELS LF  L K+S+FV G ++E  S LAA+MGFVLGNLPVRYLGLPLL+GRL  + CAPL++RITSRIRSW ARV SF
Subjt:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF

Query:  AGRLQLVRFVLRSL
        AGRLQL+R+VLRSL
Subjt:  AGRLQLVRFVLRSL

KAA0065355.1 F17F8.5 [Cucumis melo var. makuwa]1.5e-3979.82Show/hide
Query:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF
        MIFCAADEPSLSF+RE LQKFGELS LF  L KSSIFV   SNEA S LAA+MGFV GNLPVRYLGLPLL GRL  N CAPL++R+TSRIRSWTA+VLSF
Subjt:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF

Query:  AGRLQLVRFVLRSL
         GRLQLVR VLRSL
Subjt:  AGRLQLVRFVLRSL

TrEMBL top hitse value%identityAlignment
A0A5A7T2Y1 Uncharacterized protein1.4e-4686.84Show/hide
Query:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF
        MIFCAADEPSLSFVRETLQKFGEL  L A LGKSSIFVVGGSNE  S +AA+MGFVLGNLPVRYLGLPLLTGRLHPN CAPL++RITSRIRSWT RVLS+
Subjt:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF

Query:  AGRLQLVRFVLRSL
         GRLQLVRFVLRSL
Subjt:  AGRLQLVRFVLRSL

A0A5A7TKU4 Non-LTR retroelement reverse transcriptase-like protein1.8e-4179.82Show/hide
Query:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF
        MIFC ADEPSLSFVRETLQKFGEL  L+A LGK SIFV G +NE  S LAANMGF+LGNLPVRYL LPLLTGRL P+ CAPL++RITSRIRSW ARVLSF
Subjt:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF

Query:  AGRLQLVRFVLRSL
        AGR QLVR V RSL
Subjt:  AGRLQLVRFVLRSL

A0A5A7UV01 F17F8.56.3e-3978.95Show/hide
Query:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF
        MIFCAADEPS+ F+RE LQKFGELS LFA   KSSIFV G +NE  S LAA MGFV GNLP+RYLGLPLL GRL  N  APL++RITSRIRSWTARVLSF
Subjt:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF

Query:  AGRLQLVRFVLRSL
        AGRLQLVRFVLRSL
Subjt:  AGRLQLVRFVLRSL

A0A5A7V2L9 Putative reverse transcriptase7.0e-3874.56Show/hide
Query:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF
        MIFCAADE SL F+RE LQKFGELS LF  L K+S+FV G ++E  S LAA+MGFVLGNLPVRYLGLPLL+GRL  + CAPL++RITSRIRSW ARV SF
Subjt:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF

Query:  AGRLQLVRFVLRSL
        AGRLQL+R+VLRSL
Subjt:  AGRLQLVRFVLRSL

A0A5A7VHU9 F17F8.57.5e-4079.82Show/hide
Query:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF
        MIFCAADEPSLSF+RE LQKFGELS LF  L KSSIFV   SNEA S LAA+MGFV GNLPVRYLGLPLL GRL  N CAPL++R+TSRIRSWTA+VLSF
Subjt:  MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSF

Query:  AGRLQLVRFVLRSL
         GRLQLVR VLRSL
Subjt:  AGRLQLVRFVLRSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein8.5e-1248.05Show/hide
Query:  VVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSFAGRLQLVRFVLRSL
        + G  +   + +  +  F  G LPVRYLGLPLLT ++  +   PLV +I  RI  WTAR LSFAGRLQL+  V+ SL
Subjt:  VVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSFAGRLQLVRFVLRSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATTTTGTGCTGCTGATGAACCATCTCTAAGTTTTGTTCGGGAGACTCTTCAGAAGTTTGGTGAGCTTTCGTATTTGTTTGCAAAACTTGGGAAAAGCTCTATTTT
TGTTGTGGGAGGTAGTAATGAGGCTACTTCTTCTCTGGCTGCTAATATGGGTTTCGTCCTTGGAAATCTCCCTGTTCGCTATCTTGGCCTTCCTTTACTTACTGGTAGGT
TACATCCTAATTATTGTGCACCACTTGTTCGACGTATTACTAGTCGGATTCGTTCTTGGACTGCTAGAGTTCTATCTTTTGCTGGTAGATTGCAGCTTGTTCGTTTTGTG
CTTCGCAGTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATATTTTGTGCTGCTGATGAACCATCTCTAAGTTTTGTTCGGGAGACTCTTCAGAAGTTTGGTGAGCTTTCGTATTTGTTTGCAAAACTTGGGAAAAGCTCTATTTT
TGTTGTGGGAGGTAGTAATGAGGCTACTTCTTCTCTGGCTGCTAATATGGGTTTCGTCCTTGGAAATCTCCCTGTTCGCTATCTTGGCCTTCCTTTACTTACTGGTAGGT
TACATCCTAATTATTGTGCACCACTTGTTCGACGTATTACTAGTCGGATTCGTTCTTGGACTGCTAGAGTTCTATCTTTTGCTGGTAGATTGCAGCTTGTTCGTTTTGTG
CTTCGCAGTCTTTAA
Protein sequenceShow/hide protein sequence
MIFCAADEPSLSFVRETLQKFGELSYLFAKLGKSSIFVVGGSNEATSSLAANMGFVLGNLPVRYLGLPLLTGRLHPNYCAPLVRRITSRIRSWTARVLSFAGRLQLVRFV
LRSL