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Cmc09g0242571 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0242571
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase
Genome locationCMiso1.1chr09:4854814..4855176
RNA-Seq ExpressionCmc09g0242571
SyntenyCmc09g0242571
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003729 - mRNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037654.1 integrase [Cucumis melo var. makuwa]3.1e-5996.67Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK
        +RSIQEIYNATN INDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSN NVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYEKIFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI

KAA0039947.1 integrase [Cucumis melo var. makuwa]6.6e-5791.67Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK
        MRSIQEIYN TN+INDDHFA+FALF GVDPVTFDEAIQDEKWKIAMDQEI+AIRRNETWELMELPTNKQALGV W+YRTKLKS+GNVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYE+IFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI

KAA0060377.1 integrase [Cucumis melo var. makuwa]6.6e-5791.67Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK
        MRSIQEIYN TN+INDDHFA+FALF GVDPVTFDEAIQDEKWKIAMDQEI+AIRRNETWELMELPTNKQALGV W+YRTKLKS+GNVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYE+IFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI

TYJ95504.1 integrase [Cucumis melo var. makuwa]6.6e-5791.67Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK
        MRSIQEIYN TN+INDDHFA+FALF GVDPVTFDEAIQDEKWKIAMDQEI+AIRRNETWELMELPTNKQALGV W+YRTKLKS+GNVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYE+IFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI

TYK30104.1 integrase [Cucumis melo var. makuwa]6.6e-5791.67Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK
        MRSIQEIYN TN+INDDHFA+FALF GVDPVTFDEAIQDEKWKIAMDQEI+AIRRNETWELMELPTNKQALGV W+YRTKLKS+GNVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYE+IFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI

TrEMBL top hitse value%identityAlignment
A0A5A7UZJ8 Integrase3.2e-5791.67Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK
        MRSIQEIYN TN+INDDHFA+FALF GVDPVTFDEAIQDEKWKIAMDQEI+AIRRNETWELMELPTNKQALGV W+YRTKLKS+GNVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYE+IFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI

A0A5D3BQ81 Integrase3.2e-5791.67Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK
        MRSIQEIYN TN+INDDHFA+FALF GVDPVTFDEAIQDEKWKIAMDQEI+AIRRNETWELMELPTNKQALGV W+YRTKLKS+GNVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYE+IFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI

A0A5D3CLV1 Integrase3.2e-5791.67Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK
        MRSIQEIYN TN+INDDHFA+FALF GVDPVTFDEAIQDEKWKIAMDQEI+AIRRNETWELMELPTNKQALGV W+YRTKLKS+GNVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYE+IFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI

A0A5D3DHS9 Integrase1.5e-5996.67Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK
        +RSIQEIYNATN INDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSN NVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYEKIFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI

A0A5D3E3T2 Integrase3.2e-5791.67Show/hide
Query:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK
        MRSIQEIYN TN+INDDHFA+FALF GVDPVTFDEAIQDEKWKIAMDQEI+AIRRNETWELMELPTNKQALGV W+YRTKLKS+GNVEKYKARLVVKGYK
Subjt:  MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYK

Query:  QKYGVDYEKIFAPVTRIETI
        Q+YGVDYE+IFAPVTRIETI
Subjt:  QKYGVDYEKIFAPVTRIETI

SwissProt top hitse value%identityAlignment
P04146 Copia protein6.5e-1543.01Show/hide
Query:  PVTFDE-AIQDEK--WKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIFAPVTRIET
        P +FDE   +D+K  W+ A++ E+NA + N TW + + P NK  +   W++  K    GN  +YKARLV +G+ QKY +DYE+ FAPV RI +
Subjt:  PVTFDE-AIQDEK--WKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIFAPVTRIET

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.0e-1340.79Show/hide
Query:  AMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIFAPVTRIETI
        AM +E+ ++++N T++L+ELP  K+ L   W+++ K   +  + +YKARLVVKG++QK G+D+++IF+PV ++ +I
Subjt:  AMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIFAPVTRIETI

P92520 Uncharacterized mitochondrial protein AtMg008201.2e-1636.7Show/hide
Query:  NKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIF
        NK+N  +       +  +P +   A++D  W  AM +E++A+ RN+TW L+  P N+  LG  W+++TKL S+G +++ KARLV KG+ Q+ G+ + + +
Subjt:  NKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIF

Query:  APVTRIETI
        +PV R  TI
Subjt:  APVTRIETI

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.7e-1539.45Show/hide
Query:  KINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELM-ELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIF
        K N  +    +L    +P T  +A++DE+W+ AM  EINA   N TW+L+   P++   +G  WI+  K  S+G++ +YKARLV KGY Q+ G+DY + F
Subjt:  KINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELM-ELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIF

Query:  APVTRIETI
        +PV +  +I
Subjt:  APVTRIETI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE24.9e-1538.53Show/hide
Query:  KINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELM-ELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIF
        K N  +    +L    +P T  +A++D++W+ AM  EINA   N TW+L+   P +   +G  WI+  K  S+G++ +YKARLV KGY Q+ G+DY + F
Subjt:  KINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELM-ELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIF

Query:  APVTRIETI
        +PV +  +I
Subjt:  APVTRIETI

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.5e-1943.48Show/hide
Query:  DPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIFAPVTRIETI
        +P T++EA +   W  AMD EI A+    TWE+  LP NK+ +G  W+Y+ K  S+G +E+YKARLV KGY Q+ G+D+ + F+PV ++ ++
Subjt:  DPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIFAPVTRIETI

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)8.4e-1836.7Show/hide
Query:  NKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIF
        NK+N  +       +  +P +   A++D  W  AM +E++A+ RN+TW L+  P N+  LG  W+++TKL S+G +++ KARLV KG+ Q+ G+ + + +
Subjt:  NKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYKQKYGVDYEKIF

Query:  APVTRIETI
        +PV R  TI
Subjt:  APVTRIETI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAGTATTCAAGAAATTTATAATGCTACTAACAAAATTAATGATGATCATTTTGCTCATTTTGCATTGTTTGTTGGTGTTGATCCTGTAACTTTTGATGAAGCCAT
CCAAGATGAGAAATGGAAGATTGCAATGGATCAAGAAATTAATGCGATAAGAAGAAATGAAACATGGGAGTTGATGGAGCTTCCAACAAATAAACAAGCTCTTGGAGTAA
ACTGGATTTACAGAACAAAGTTGAAGTCAAATGGTAATGTTGAAAAATACAAGGCAAGACTTGTTGTAAAAGGCTACAAGCAGAAATACGGTGTGGATTATGAAAAAATA
TTTGCCCCTGTAACAAGAATTGAGACCATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAGTATTCAAGAAATTTATAATGCTACTAACAAAATTAATGATGATCATTTTGCTCATTTTGCATTGTTTGTTGGTGTTGATCCTGTAACTTTTGATGAAGCCAT
CCAAGATGAGAAATGGAAGATTGCAATGGATCAAGAAATTAATGCGATAAGAAGAAATGAAACATGGGAGTTGATGGAGCTTCCAACAAATAAACAAGCTCTTGGAGTAA
ACTGGATTTACAGAACAAAGTTGAAGTCAAATGGTAATGTTGAAAAATACAAGGCAAGACTTGTTGTAAAAGGCTACAAGCAGAAATACGGTGTGGATTATGAAAAAATA
TTTGCCCCTGTAACAAGAATTGAGACCATCTGA
Protein sequenceShow/hide protein sequence
MRSIQEIYNATNKINDDHFAHFALFVGVDPVTFDEAIQDEKWKIAMDQEINAIRRNETWELMELPTNKQALGVNWIYRTKLKSNGNVEKYKARLVVKGYKQKYGVDYEKI
FAPVTRIETI