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Cmc09g0242721 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0242721
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationCMiso1.1chr09:5005419..5005697
RNA-Seq ExpressionCmc09g0242721
SyntenyCmc09g0242721
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032146.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.9e-3394.59Show/hide
Query:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMS
        MRLCIDYKELNKVTVKN YPLPRIDDLFDQLQGAT+FSK+DLR GYHQLRIRDSDIPKTTFRSRYGHYEFIVMS
Subjt:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMS

KAA0051386.1 putative Retrotransposon protein [Cucumis melo var. makuwa]3.0e-3394.59Show/hide
Query:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMS
        MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLR GYHQLRIRDSDIPKT FRSRYGHYEFIVMS
Subjt:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMS

KAA0066101.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-3381.82Show/hide
Query:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMSLILGKLLRTTLGLL
        MRLCIDY+ELNKVT+KNRYPLPRIDDLFDQLQGAT+FSKIDLR GYHQLRIRDSDIPKT FRSRYGHYEFIVMS  L   L   + L+
Subjt:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMSLILGKLLRTTLGLL

TYJ97414.1 pol protein [Cucumis melo var. makuwa]3.0e-3395.95Show/hide
Query:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMS
        MRLCIDY+ELNKVTVKNRYPLP IDDLFDQLQGATIFSKIDLR GYHQLRIRDSDIPKTTFRSRYGHYEFIVMS
Subjt:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMS

TYK04344.1 reverse transcriptase [Cucumis melo var. makuwa]3.0e-3394.59Show/hide
Query:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMS
        MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLR GYHQLRIRDSDIPKT FRSRYGHYEFIVMS
Subjt:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMS

TrEMBL top hitse value%identityAlignment
A0A5A7UB12 Reverse transcriptase1.4e-3394.59Show/hide
Query:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMS
        MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLR GYHQLRIRDSDIPKT FRSRYGHYEFIVMS
Subjt:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMS

A0A5A7VBY3 Reverse transcriptase1.9e-3393.24Show/hide
Query:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMS
        MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLR GYHQLRIRDSDIPKT FRSRYGHYEF+VMS
Subjt:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMS

A0A5A7VK60 Reverse transcriptase1.1e-3381.82Show/hide
Query:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMSLILGKLLRTTLGLL
        MRLCIDY+ELNKVT+KNRYPLPRIDDLFDQLQGAT+FSKIDLR GYHQLRIRDSDIPKT FRSRYGHYEFIVMS  L   L   + L+
Subjt:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMSLILGKLLRTTLGLL

A0A5D3BEF2 Pol protein1.4e-3395.95Show/hide
Query:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMS
        MRLCIDY+ELNKVTVKNRYPLP IDDLFDQLQGATIFSKIDLR GYHQLRIRDSDIPKTTFRSRYGHYEFIVMS
Subjt:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMS

A0A5D3BZD2 Reverse transcriptase1.4e-3394.59Show/hide
Query:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMS
        MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLR GYHQLRIRDSDIPKT FRSRYGHYEFIVMS
Subjt:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMS

SwissProt top hitse value%identityAlignment
P0CT41 Transposon Tf2-12 polyprotein5.5e-1446.58Show/hide
Query:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVM
        +R+ +DYK LNK    N YPLP I+ L  ++QG+TIF+K+DL+  YH +R+R  D  K  FR   G +E++VM
Subjt:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVM

P31843 RNA-directed DNA polymerase homolog9.3e-2255.68Show/hide
Query:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMSLILGKLLRTTLGLL
        +R+CIDY+ L KVT+KN+YP+PR+DDLFD+L  AT F+K+DLR GY Q+RI   D PKTT  +RYG +EF VM   L   L T   L+
Subjt:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMSLILGKLLRTTLGLL

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein2.5e-1447.22Show/hide
Query:  RLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVM
        RLC+DY+ LNK T+ + +PLPRID+L  ++  A IF+ +DL  GYHQ+ +   D  KT F +  G YE+ VM
Subjt:  RLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVM

Q99315 Transposon Ty3-G Gag-Pol polyprotein2.5e-1447.22Show/hide
Query:  RLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVM
        RLC+DY+ LNK T+ + +PLPRID+L  ++  A IF+ +DL  GYHQ+ +   D  KT F +  G YE+ VM
Subjt:  RLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVM

Q9UR07 Transposon Tf2-11 polyprotein5.5e-1446.58Show/hide
Query:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVM
        +R+ +DYK LNK    N YPLP I+ L  ++QG+TIF+K+DL+  YH +R+R  D  K  FR   G +E++VM
Subjt:  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVM

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCCTTTGCATTGACTACAAAGAGCTGAACAAGGTGACAGTCAAGAACCGCTACCCCTTGCCTAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACTATCTT
TTCTAAGATCGACCTGCGATTCGGCTATCACCAGCTGAGGATCAGGGACAGTGATATTCCTAAGACGACCTTCCGTTCAAGATACGGACATTACGAGTTCATTGTGATGT
CCTTGATCTTGGGTAAGTTGCTTCGAACAACTCTTGGACTTCTTTTCCATGAAGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGCCTTTGCATTGACTACAAAGAGCTGAACAAGGTGACAGTCAAGAACCGCTACCCCTTGCCTAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACTATCTT
TTCTAAGATCGACCTGCGATTCGGCTATCACCAGCTGAGGATCAGGGACAGTGATATTCCTAAGACGACCTTCCGTTCAAGATACGGACATTACGAGTTCATTGTGATGT
CCTTGATCTTGGGTAAGTTGCTTCGAACAACTCTTGGACTTCTTTTCCATGAAGGTTAG
Protein sequenceShow/hide protein sequence
MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMSLILGKLLRTTLGLLFHEG