CuGenDBv2

Gene ID	Cmc09g0242741
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr09:5022592..5023411
RNA-Seq Expression	Cmc09g0242741
Synteny	Cmc09g0242741
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

1.9e-30

92.96

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Query:  FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS
        FMSNPGKEHWKAVKWVLRYLKGS SVSLCYSRDCDKSTL EGFTD DY ADLDKRRSLS HIFRLYGNVVS
Subjt:  FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.9e-30

92.96

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Query:  FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS
        FMSNPGKEHWKAVKWVLRYLKGS SVSLCYSRDCDKSTL EGFTD DY ADLDKRRSLS HIFRLYGNVVS
Subjt:  FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS

KAA0060051.1 retrotransposon ty1-copia subclass [Cucumis melo var. makuwa]

7.3e-30

71.43

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Query:  MAQPKGYEGFHRNSYDACAYWKLSQKGFMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS
        MAQPKGY+   +       Y       FMSNP KEHW AVKWVLRY KGS SVSLCYS+D DKSTL EGFTDVDY ADLDKRRSLS HIFRLYGNVVS
Subjt:  MAQPKGYEGFHRNSYDACAYWKLSQKGFMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS

KAA0067243.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

1.3e-31

47.43

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Query:  EGFHRNSYDACAYWKLSQKG--------------------------------------------------------------------------------
        +GFHRNSYDAC YWKLSQKG                                                                                
Subjt:  EGFHRNSYDACAYWKLSQKG--------------------------------------------------------------------------------

Query:  ----FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS
            FMSNPGKEHWKAVKWVLRYLKGS SVSLCYSRDCDKSTL EGFTD +Y ADLDKRRSLS HIFRLYGNVVS
Subjt:  ----FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS

TYK13826.1 putative polyprotein [Cucumis melo var. makuwa]

1.9e-30

92.96

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Query:  FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS
        FMSNPGKEHWKAVKWVLRYLKGS SVSLCYSRDCDKSTL EGFTD DY ADLDKRRSLS HIFRLYGNVVS
Subjt:  FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

9.3e-31

92.96

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Query:  FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS
        FMSNPGKEHWKAVKWVLRYLKGS SVSLCYSRDCDKSTL EGFTD DY ADLDKRRSLS HIFRLYGNVVS
Subjt:  FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS

A0A5A7UB25 Putative gag-pol polyprotein

9.3e-31

92.96

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Query:  FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS
        FMSNPGKEHWKAVKWVLRYLKGS SVSLCYSRDCDKSTL EGFTD DY ADLDKRRSLS HIFRLYGNVVS
Subjt:  FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS

A0A5A7V2R7 Retrotransposon ty1-copia subclass

3.5e-30

71.43

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Query:  MAQPKGYEGFHRNSYDACAYWKLSQKGFMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS
        MAQPKGY+   +       Y       FMSNP KEHW AVKWVLRY KGS SVSLCYS+D DKSTL EGFTDVDY ADLDKRRSLS HIFRLYGNVVS
Subjt:  MAQPKGYEGFHRNSYDACAYWKLSQKGFMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS

A0A5A7VGM4 Retrotransposon protein, putative, Ty1-copia sub-class

6.4e-32

47.43

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Query:  EGFHRNSYDACAYWKLSQKG--------------------------------------------------------------------------------
        +GFHRNSYDAC YWKLSQKG                                                                                
Subjt:  EGFHRNSYDACAYWKLSQKG--------------------------------------------------------------------------------

Query:  ----FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS
            FMSNPGKEHWKAVKWVLRYLKGS SVSLCYSRDCDKSTL EGFTD +Y ADLDKRRSLS HIFRLYGNVVS
Subjt:  ----FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS

A0A5D3CTV2 Putative polyprotein

9.3e-31

92.96

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Query:  FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS
        FMSNPGKEHWKAVKWVLRYLKGS SVSLCYSRDCDKSTL EGFTD DY ADLDKRRSLS HIFRLYGNVVS
Subjt:  FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS

SwissProt top hits

e value

%identity

Alignment

P0CV72 Secreted RxLR effector protein 161

1.4e-07

39.02

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Query:  ACAYWKLSQKGFMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS
        A A   LSQ  F S+P   HW+A+K VLRYL+ + +  L ++R      +  G++D D+  D++ RRS S ++F+L G  VS
Subjt:  ACAYWKLSQKGFMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.4e-13

42.25

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Query:  FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS
        F+ NPGKEHW+AVKW+LRYL+G+    LC+        + +G+TD D   D+D R+S + ++F   G  +S
Subjt:  FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCTCAACCTAAGGGCTATGAGGGATTCCACAGGAACTCATACGATGCTTGTGCTTATTGGAAACTATCTCAGAAAGGTTTTATGTCAAATCCTGGAAAGGAACATTG
GAAAGCTGTTAAATGGGTGTTACGATATTTGAAAGGTAGTGTCAGTGTATCATTGTGTTATAGTAGGGATTGTGATAAATCAACACTGTGGGAAGGTTTCACAGATGTAG
ATTATGATGCAGATCTTGATAAAAGAAGGTCCTTATCAAGTCACATTTTTCGCTTGTATGGTAATGTTGTCAGTTGA

mRNA sequence

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Protein sequence

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MAQPKGYEGFHRNSYDACAYWKLSQKGFMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS

Cmc09g0242741 (gene) of Melon (Charmono) v1.1 genome