| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0043826.1 putative gag-pol polyprotein [Cucumis melo var. makuwa] | 7.8e-198 | 85.15 | Show/hide |
Query: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
MDQSKSLEENLDEFQKI+VDLNNIGEKMSDENQAVILLNSLP+TY+EVKA IKY RDSL MSIVLDALKTRNL+IKKERKD ELLMAR RSEKKSWKGKE
Subjt: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
Query: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
R RSKS GKSRKCFLCHKEG+FKKN PLNKS+EASTSEANVTDGY+SAEIT+GYD AET YESAEVLMVSHRDIQDA WIMDS TFHMTP+RDFL
Subjt: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
Query: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
NFQK DG K+LLGDNGT DVKGT SVQIATHD M+R LTNV YVPKLKRNLISLGELD S CTIKS+NGVMKV KGSLVKL+GTLRHG +VLE
Subjt: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
Query: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
VTDMSMLWHKRLAHV ERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRV+FGKGKH TKG LDYVHSDLWGPTKE SMGG RYFISIIDDF
Subjt: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
Query: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
S KVW+YPLKQKDEAFGKFLEWKKQVENQTG
Subjt: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
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| KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa] | 6.6e-197 | 84.92 | Show/hide |
Query: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
MDQSK LEENLDEFQKI+VDLNNIGEKMSDENQAVILLNSLP+TY+EVKA IKY DSL MSIVLDALKTRNL+IKKERKD ELLMAR RSEKKSWKGKE
Subjt: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
Query: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
R RSKS GKSRKCFLCHKEG+FKKN PLNKS+EASTSEANVTDGY+SAEITDG D AET YESAEVLMVSHRDIQDA WIMDS TFHMTP+RDFL
Subjt: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
Query: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
NFQK DG K+LLGDNGT DVKGT SVQIATHD M+R LTNVRYVPKLKRNLISLGELD S CTIKS+NGVMKV KGSLVKLRGTLRHG +VLE
Subjt: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
Query: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
VT+MSMLWHKRLAHV ERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRV+FGKGKHTTKG LDY+HSDLWGPTKE SMGG RYFISIIDDF
Subjt: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
Query: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
S KVW+YPLKQKDEAFGKFLEWKKQVENQTG
Subjt: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
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| KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa] | 2.9e-200 | 86.08 | Show/hide |
Query: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
MDQSKSLEENLDEFQKI+VDLNNIGEKMSDENQAVILLNSLP+TY+EVKA IKY RDSL MSIVLDALKTRNL+IKKERKD ELLMAR RSEKKSWKGKE
Subjt: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
Query: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
R RSKS GKSRKCFLCHKEG+FKKN PLNKS+EASTSEANVTDGY+SAEITDGYD AET YESAEVLMVSHRDIQDA WIMDS TFHMTP+RDFL
Subjt: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
Query: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
NFQK DG K+LLGDNGT DVKGT SVQIATHD M+R LTNVRYVPKLKRNLISLGELD S CTIKS+NGVMKV KGSLVKLRGTLRHG +VLE
Subjt: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
Query: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
VTDMSMLWHKRLAHV ERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRV+FGKGKHTTKG LDYVHSDLWGPTKE SMGG RYFISIIDDF
Subjt: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
Query: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
S KVW+YPLKQKDEAFGKFLEWKKQVENQTG
Subjt: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
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| KAA0067607.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] | 3.3e-188 | 82.6 | Show/hide |
Query: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
MDQSKSLEENLDEFQKIIVDL+NIGEKMSDENQAVILLNSLP+TY+EVKA IKY RDSL MSIVLDALKTRNL+IKKERKD ELLMAR RSEKKSWKGKE
Subjt: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
Query: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
R SRSKS GKSRKCFLCHK G+FKKN PLNKS+EASTSEANVTDGY+ AEITDG YESAEVLMVSHRDIQDA WIMDS TFHMTP+RDFL
Subjt: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
Query: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
NFQKGDG K+LLGDNG DVK T SVQIATHD M+R LTNVRYVPKLKRNLISLGELD S CTIKS+NGVMKV KGSLVKLRGTLRHG +VLE
Subjt: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
Query: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
VT M MLWH RLAHV ERGLQALSQQGLL GVKNVEL FCEHCIMGK TRV+FGKGKHTTKG LDYVHSDLWGPTKE MGG RYFISIIDDF
Subjt: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
Query: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
S KVW+YPLKQKDEAFGKFLEWKKQVE QTG
Subjt: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
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| TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa] | 2.9e-200 | 86.08 | Show/hide |
Query: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
MDQSKSLEENLDEFQKI+VDLNNIGEKMSDENQAVILLNSLP+TY+EVKA IKY RDSL MSIVLDALKTRNL+IKKERKD ELLMAR RSEKKSWKGKE
Subjt: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
Query: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
R RSKS GKSRKCFLCHKEG+FKKN PLNKS+EASTSEANVTDGY+SAEITDGYD AET YESAEVLMVSHRDIQDA WIMDS TFHMTP+RDFL
Subjt: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
Query: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
NFQK DG K+LLGDNGT DVKGT SVQIATHD M+R LTNVRYVPKLKRNLISLGELD S CTIKS+NGVMKV KGSLVKLRGTLRHG +VLE
Subjt: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
Query: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
VTDMSMLWHKRLAHV ERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRV+FGKGKHTTKG LDYVHSDLWGPTKE SMGG RYFISIIDDF
Subjt: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
Query: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
S KVW+YPLKQKDEAFGKFLEWKKQVENQTG
Subjt: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7TP18 Putative gag-pol polyprotein | 3.8e-198 | 85.15 | Show/hide |
Query: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
MDQSKSLEENLDEFQKI+VDLNNIGEKMSDENQAVILLNSLP+TY+EVKA IKY RDSL MSIVLDALKTRNL+IKKERKD ELLMAR RSEKKSWKGKE
Subjt: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
Query: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
R RSKS GKSRKCFLCHKEG+FKKN PLNKS+EASTSEANVTDGY+SAEIT+GYD AET YESAEVLMVSHRDIQDA WIMDS TFHMTP+RDFL
Subjt: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
Query: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
NFQK DG K+LLGDNGT DVKGT SVQIATHD M+R LTNV YVPKLKRNLISLGELD S CTIKS+NGVMKV KGSLVKL+GTLRHG +VLE
Subjt: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
Query: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
VTDMSMLWHKRLAHV ERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRV+FGKGKH TKG LDYVHSDLWGPTKE SMGG RYFISIIDDF
Subjt: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
Query: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
S KVW+YPLKQKDEAFGKFLEWKKQVENQTG
Subjt: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
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| A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class | 3.2e-197 | 84.92 | Show/hide |
Query: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
MDQSK LEENLDEFQKI+VDLNNIGEKMSDENQAVILLNSLP+TY+EVKA IKY DSL MSIVLDALKTRNL+IKKERKD ELLMAR RSEKKSWKGKE
Subjt: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
Query: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
R RSKS GKSRKCFLCHKEG+FKKN PLNKS+EASTSEANVTDGY+SAEITDG D AET YESAEVLMVSHRDIQDA WIMDS TFHMTP+RDFL
Subjt: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
Query: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
NFQK DG K+LLGDNGT DVKGT SVQIATHD M+R LTNVRYVPKLKRNLISLGELD S CTIKS+NGVMKV KGSLVKLRGTLRHG +VLE
Subjt: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
Query: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
VT+MSMLWHKRLAHV ERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRV+FGKGKHTTKG LDY+HSDLWGPTKE SMGG RYFISIIDDF
Subjt: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
Query: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
S KVW+YPLKQKDEAFGKFLEWKKQVENQTG
Subjt: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
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| A0A5A7UB25 Putative gag-pol polyprotein | 1.4e-200 | 86.08 | Show/hide |
Query: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
MDQSKSLEENLDEFQKI+VDLNNIGEKMSDENQAVILLNSLP+TY+EVKA IKY RDSL MSIVLDALKTRNL+IKKERKD ELLMAR RSEKKSWKGKE
Subjt: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
Query: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
R RSKS GKSRKCFLCHKEG+FKKN PLNKS+EASTSEANVTDGY+SAEITDGYD AET YESAEVLMVSHRDIQDA WIMDS TFHMTP+RDFL
Subjt: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
Query: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
NFQK DG K+LLGDNGT DVKGT SVQIATHD M+R LTNVRYVPKLKRNLISLGELD S CTIKS+NGVMKV KGSLVKLRGTLRHG +VLE
Subjt: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
Query: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
VTDMSMLWHKRLAHV ERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRV+FGKGKHTTKG LDYVHSDLWGPTKE SMGG RYFISIIDDF
Subjt: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
Query: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
S KVW+YPLKQKDEAFGKFLEWKKQVENQTG
Subjt: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
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| A0A5A7VKC2 Retrotransposon protein, putative, Ty1-copia subclass | 1.6e-188 | 82.6 | Show/hide |
Query: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
MDQSKSLEENLDEFQKIIVDL+NIGEKMSDENQAVILLNSLP+TY+EVKA IKY RDSL MSIVLDALKTRNL+IKKERKD ELLMAR RSEKKSWKGKE
Subjt: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
Query: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
R SRSKS GKSRKCFLCHK G+FKKN PLNKS+EASTSEANVTDGY+ AEITDG YESAEVLMVSHRDIQDA WIMDS TFHMTP+RDFL
Subjt: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
Query: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
NFQKGDG K+LLGDNG DVK T SVQIATHD M+R LTNVRYVPKLKRNLISLGELD S CTIKS+NGVMKV KGSLVKLRGTLRHG +VLE
Subjt: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
Query: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
VT M MLWH RLAHV ERGLQALSQQGLL GVKNVEL FCEHCIMGK TRV+FGKGKHTTKG LDYVHSDLWGPTKE MGG RYFISIIDDF
Subjt: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
Query: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
S KVW+YPLKQKDEAFGKFLEWKKQVE QTG
Subjt: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
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| A0A5D3DNU1 Putative gag-pol polyprotein | 1.4e-200 | 86.08 | Show/hide |
Query: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
MDQSKSLEENLDEFQKI+VDLNNIGEKMSDENQAVILLNSLP+TY+EVKA IKY RDSL MSIVLDALKTRNL+IKKERKD ELLMAR RSEKKSWKGKE
Subjt: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLMARERSEKKSWKGKE
Query: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
R RSKS GKSRKCFLCHKEG+FKKN PLNKS+EASTSEANVTDGY+SAEITDGYD AET YESAEVLMVSHRDIQDA WIMDS TFHMTP+RDFL
Subjt: RRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMTPNRDFLI
Query: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
NFQK DG K+LLGDNGT DVKGT SVQIATHD M+R LTNVRYVPKLKRNLISLGELD S CTIKS+NGVMKV KGSLVKLRGTLRHG +VLE
Subjt: NFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLRHGQFVLE-------
Query: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
VTDMSMLWHKRLAHV ERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRV+FGKGKHTTKG LDYVHSDLWGPTKE SMGG RYFISIIDDF
Subjt: -------VTDMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFISIIDDF
Query: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
S KVW+YPLKQKDEAFGKFLEWKKQVENQTG
Subjt: SMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
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| SwissProt top hits | e value | %identity | Alignment |
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 5.3e-48 | 29.82 | Show/hide |
Query: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLM--ARERSEKKS---
M + + +L+ F +I L N+G K+ +E++A++LLNSLP +Y + I + + ++ + V AL KK + L+ R RS ++S
Subjt: MDQSKSLEENLDEFQKIIVDLNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKERKDDELLM--ARERSEKKS---
Query: --WKGKERRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMT
G +S+++S + R C+ C++ G+FK++ P N K + D +A + + ++ +E E H ++ W++D+ + H T
Subjt: --WKGKERRSRSKSNGKSRKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANWIMDSRYTFHMT
Query: PNRDFLINFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLR-------
P RD + GD + +G+ + G + I T+ L +VR+VP L+ NLIS LD N ++ KGSLV +G R
Subjt: PNRDFLINFQKGDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGVMKVIKGSLVKLRGTLR-------
Query: ----HGQFVLEVTDMSM-LWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFIS
G+ ++S+ LWHKR+ H+ E+GLQ L+++ L+ K + C++C+ GK RV F LD V+SD+ GP + SMGG +YF++
Subjt: ----HGQFVLEVTDMSM-LWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSDLWGPTKETSMGGLRYFIS
Query: IIDDFSMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
IDD S K+W+Y LK KD+ F F ++ VE +TG
Subjt: IIDDFSMKVWMYPLKQKDEAFGKFLEWKKQVENQTG
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| P93293 Uncharacterized mitochondrial protein AtMg00300 | 2.1e-20 | 45.3 | Show/hide |
Query: ELDTSDCTIKSKNGVMKVIKG----SLVKLRGTLRHGQFVLEVT--DMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKG
E S+ +K G ++KG SL L+G++ G+ L T D + LWH RLAH+ +RG++ L ++G L K L FCE CI GK+ RV F G
Subjt: ELDTSDCTIKSKNGVMKVIKG----SLVKLRGTLRHGQFVLEVT--DMSMLWHKRLAHVRERGLQALSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKG
Query: KHTTKGTLDYVHSDLWG
+HTTK LDYVHSDLWG
Subjt: KHTTKGTLDYVHSDLWG
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 2.6e-18 | 26.72 | Show/hide |
Query: NWIMDSRYTFHMTPNRDFLINFQK-GDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGV---------
NW++DS T H+T + + L Q G+ +++ D T + T S ++T R + L N+ YVP + +NLIS+ L C + NGV
Subjt: NWIMDSRYTFHMTPNRDFLINFQK-GDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGELDTSDCTIKSKNGV---------
Query: -MKVIKGSLVKLRGTLRHGQFVLEVTDMSML--------------WHKRLAHVRERGLQALSQQGLLGGVKNVELPF--CEHCIMGKSTRVEFGKGKHTT
+K + + L+G + + + + WH RL H L ++ L V N F C C++ KS +V F + +
Subjt: -MKVIKGSLVKLRGTLRHGQFVLEVTDMSML--------------WHKRLAHVRERGLQALSQQGLLGGVKNVELPF--CEHCIMGKSTRVEFGKGKHTT
Query: KGTLDYVHSDLWGPTKETSMGGLRYFISIIDDFSMKVWMYPLKQKDEAFGKFLEWKKQVENQ
L+Y++SD+W + S RY++ +D F+ W+YPLKQK + F+ +K +EN+
Subjt: KGTLDYVHSDLWGPTKETSMGGLRYFISIIDDFSMKVWMYPLKQKDEAFGKFLEWKKQVENQ
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 4.1e-16 | 22.79 | Show/hide |
Query: MDQSKSLE---ENLDEFQKIIVD----------LNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKER--KDDELL
MD + +E ENL + K ++D L I E++ + ++ LNS + ++ I + + RN + + + D
Subjt: MDQSKSLE---ENLDEFQKIIVD----------LNNIGEKMSDENQAVILLNSLPKTYQEVKADIKYDRDSLIMSIVLDALKTRNLKIKKER--KDDELL
Query: MARERSEKKSWKGKERRSRSKSNGKS---RKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANW
+ SW+ SRS + +C +C +G+ K P +++T++ T + T A + + S + NW
Subjt: MARERSEKKSWKGKERRSRSKSNGKS---RKCFLCHKEGYFKKNYPLNKSKEASTSEANVTDGYHSAEITDGYDLAETTDEYESAEVLMVSHRDIQDANW
Query: IMDSRYTFHMTPNRDFLINFQK-GDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGEL-DTSDCTIK--SKNGVMKVIKGSL
++DS T H+T + + L Q G+ +++ D T + T S + T R + L V YVP + +NLIS+ L +T+ +++ + +K + +
Subjt: IMDSRYTFHMTPNRDFLINFQK-GDGEKILLGDNGTYDVKGTSSVQIATHDRMIRRLTNVRYVPKLKRNLISLGEL-DTSDCTIK--SKNGVMKVIKGSL
Query: VKLRGTLRHGQFVLEVTD---MSML-----------WHKRLAHVRERGLQA-LSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSD
L+G + + + +SM WH RL H L + +S L + +L C C + KS +V F T+ L+Y++SD
Subjt: VKLRGTLRHGQFVLEVTD---MSML-----------WHKRLAHVRERGLQA-LSQQGLLGGVKNVELPFCEHCIMGKSTRVEFGKGKHTTKGTLDYVHSD
Query: LWGPTKETSMGGLRYFISIIDDFSMKVWMYPLKQKDEAFGKFLEWKKQVENQ
+W + S+ RY++ +D F+ W+YPLKQK + F+ +K VEN+
Subjt: LWGPTKETSMGGLRYFISIIDDFSMKVWMYPLKQKDEAFGKFLEWKKQVENQ
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