; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0242861 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0242861
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr09:5239819..5240546
RNA-Seq ExpressionCmc09g0242861
SyntenyCmc09g0242861
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047130.1 reverse transcriptase [Cucumis melo var. makuwa]3.2e-9473.88Show/hide
Query:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEA---EHLRMVLETLRANKLYA
        +FSKIDLRSGYHQLRIKD D+PKT FRSRYGHYEFIVMSFGLTNA TMFMDLMN+VF++FL TFVIVFIDDIL+YSK+EA   EHLR+VL+TLR NKLYA
Subjt:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEA---EHLRMVLETLRANKLYA

Query:  KFQ--------------------------NIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTT
        KF                            I+ +T W++PS VS+VRSFL L GYYRRFVE+FSRIATPLTQLTRKGAPFVWSKA + SFQNLKQKLVT 
Subjt:  KFQ--------------------------NIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTT

Query:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLKSHK
        PVLTVPDGSGSFVIY+DAFKKGLGCVLMQQGKV+ YASRQLKSH+
Subjt:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLKSHK

KAA0047905.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]3.2e-9481Show/hide
Query:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAE---HLRMVLETLRANKLYA
        MFSKIDL SGYHQLRIKDSD+PKT F S+YGHYEFIVMSFGLTNA T+FMDLMN+VF++FL TFVIVFIDDIL+YSK EAE   HLRMVLETLRANKLYA
Subjt:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAE---HLRMVLETLRANKLYA

Query:  KFQNIKV--ITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTTPVLTVPDGSGSFVIYNDAFKKGLG
        KF   K+  +TSW RPS VS+VRSFL L GYYRRFVE+FSR ATPLT LTRKG PFVWS A +DSFQNLKQKLV  PVLTVPDGSGSFVIY+DA KKGLG
Subjt:  KFQNIKV--ITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTTPVLTVPDGSGSFVIYNDAFKKGLG

Query:  CVLMQQGKVITYASRQLKSHK
        CVLMQQGKV+ YASRQLKSH+
Subjt:  CVLMQQGKVITYASRQLKSHK

KAA0053234.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.2e-9473.88Show/hide
Query:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEA---EHLRMVLETLRANKLYA
        +FSKIDLRSGYHQLRIKD D+PKT FRSRYGHYEFIVMSFGLTNA  +FMDLMN+VF++FL TFVIVFIDDIL+YSK EA   EHLRMVL+TLR NKLYA
Subjt:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEA---EHLRMVLETLRANKLYA

Query:  KFQ--------------------------NIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTT
        KF                            I+ +T W+RPS VS+VRSFL L GYYRRFVE+FSRIATPLTQLTRKGAPFVWSKA +DSFQNLKQKLVT 
Subjt:  KFQ--------------------------NIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTT

Query:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLKSHK
        PVLTVP+GSGSFVIY+DAFKKGLGCVLMQQGKV+ YASRQLKSH+
Subjt:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLKSHK

KAA0059062.1 pol protein [Cucumis melo var. makuwa]7.6e-9681.45Show/hide
Query:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAE---HLRMVLETLRANKLYA
        +FSKIDLRSGYHQLRIKD D+PKT FRSRYGHYEFIVMSFGLTNA  +FMDLMN+VF++FL TFVIVFIDDIL+YSK EAE   HLRMVL+TLR NKLYA
Subjt:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAE---HLRMVLETLRANKLYA

Query:  KFQNIKV--ITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTTPVLTVPDGSGSFVIYNDAFKKGLG
        KF   K+  +T W+ PS VS+VRSFL L GYYRRFVE+FSRIATPLTQLTRKGAPFVWSKA +DSFQNLKQKLVT PVLTVPDGSGSFVIY+DA KKGLG
Subjt:  KFQNIKV--ITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTTPVLTVPDGSGSFVIYNDAFKKGLG

Query:  CVLMQQGKVITYASRQLKSHK
        CVLMQQGKV+ YASRQLKSH+
Subjt:  CVLMQQGKVITYASRQLKSHK

KAA0067479.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.2e-9474.29Show/hide
Query:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEA---EHLRMVLETLRANKLYA
        +FSKIDLRSGYHQLRIKD D+PKT FRSRYGHYEFIVMSFGLTNA T+FMDLMN+VF++FL TFVIVFIDDIL+YSK EA   EHLRMVL+TLR NKLYA
Subjt:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEA---EHLRMVLETLRANKLYA

Query:  KFQ--------------------------NIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTT
        KF                            IK +TSW+RPS +S+VRSFL L GYYRRFVE+FSRIAT LTQLTRKGAPFVWSKA +DSFQNLKQKLVT 
Subjt:  KFQ--------------------------NIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTT

Query:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLKSHK
        PVLTVPDGSGSFVIY+DA KKGLGCVLMQQGKV+ YASRQLKSH+
Subjt:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLKSHK

TrEMBL top hitse value%identityAlignment
A0A5A7TVD9 Reverse transcriptase1.5e-9473.88Show/hide
Query:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEA---EHLRMVLETLRANKLYA
        +FSKIDLRSGYHQLRIKD D+PKT FRSRYGHYEFIVMSFGLTNA TMFMDLMN+VF++FL TFVIVFIDDIL+YSK+EA   EHLR+VL+TLR NKLYA
Subjt:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEA---EHLRMVLETLRANKLYA

Query:  KFQ--------------------------NIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTT
        KF                            I+ +T W++PS VS+VRSFL L GYYRRFVE+FSRIATPLTQLTRKGAPFVWSKA + SFQNLKQKLVT 
Subjt:  KFQ--------------------------NIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTT

Query:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLKSHK
        PVLTVPDGSGSFVIY+DAFKKGLGCVLMQQGKV+ YASRQLKSH+
Subjt:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLKSHK

A0A5A7U2K4 Retrotransposon protein, putative, Ty3-gypsy subclass1.5e-9481Show/hide
Query:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAE---HLRMVLETLRANKLYA
        MFSKIDL SGYHQLRIKDSD+PKT F S+YGHYEFIVMSFGLTNA T+FMDLMN+VF++FL TFVIVFIDDIL+YSK EAE   HLRMVLETLRANKLYA
Subjt:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAE---HLRMVLETLRANKLYA

Query:  KFQNIKV--ITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTTPVLTVPDGSGSFVIYNDAFKKGLG
        KF   K+  +TSW RPS VS+VRSFL L GYYRRFVE+FSR ATPLT LTRKG PFVWS A +DSFQNLKQKLV  PVLTVPDGSGSFVIY+DA KKGLG
Subjt:  KFQNIKV--ITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTTPVLTVPDGSGSFVIYNDAFKKGLG

Query:  CVLMQQGKVITYASRQLKSHK
        CVLMQQGKV+ YASRQLKSH+
Subjt:  CVLMQQGKVITYASRQLKSHK

A0A5A7UDB1 Reverse transcriptase2.0e-9473.88Show/hide
Query:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEA---EHLRMVLETLRANKLYA
        +FSKIDLRSGYHQLRIKD D+PKT FRSRYGHYEFIVMSFGLTNA  +FMDLMN+VF++FL TFVIVFIDDIL+YSK EA   EHLRMVL+TLR NKLYA
Subjt:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEA---EHLRMVLETLRANKLYA

Query:  KFQ--------------------------NIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTT
        KF                            I+ +T W+RPS VS+VRSFL L GYYRRFVE+FSRIATPLTQLTRKGAPFVWSKA +DSFQNLKQKLVT 
Subjt:  KFQ--------------------------NIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTT

Query:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLKSHK
        PVLTVP+GSGSFVIY+DAFKKGLGCVLMQQGKV+ YASRQLKSH+
Subjt:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLKSHK

A0A5A7UT37 Reverse transcriptase3.7e-9681.45Show/hide
Query:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAE---HLRMVLETLRANKLYA
        +FSKIDLRSGYHQLRIKD D+PKT FRSRYGHYEFIVMSFGLTNA  +FMDLMN+VF++FL TFVIVFIDDIL+YSK EAE   HLRMVL+TLR NKLYA
Subjt:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAE---HLRMVLETLRANKLYA

Query:  KFQNIKV--ITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTTPVLTVPDGSGSFVIYNDAFKKGLG
        KF   K+  +T W+ PS VS+VRSFL L GYYRRFVE+FSRIATPLTQLTRKGAPFVWSKA +DSFQNLKQKLVT PVLTVPDGSGSFVIY+DA KKGLG
Subjt:  KFQNIKV--ITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTTPVLTVPDGSGSFVIYNDAFKKGLG

Query:  CVLMQQGKVITYASRQLKSHK
        CVLMQQGKV+ YASRQLKSH+
Subjt:  CVLMQQGKVITYASRQLKSHK

A0A5A7VQP7 Reverse transcriptase1.5e-9474.29Show/hide
Query:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEA---EHLRMVLETLRANKLYA
        +FSKIDLRSGYHQLRIKD D+PKT FRSRYGHYEFIVMSFGLTNA T+FMDLMN+VF++FL TFVIVFIDDIL+YSK EA   EHLRMVL+TLR NKLYA
Subjt:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEA---EHLRMVLETLRANKLYA

Query:  KFQ--------------------------NIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTT
        KF                            IK +TSW+RPS +S+VRSFL L GYYRRFVE+FSRIAT LTQLTRKGAPFVWSKA +DSFQNLKQKLVT 
Subjt:  KFQ--------------------------NIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTT

Query:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLKSHK
        PVLTVPDGSGSFVIY+DA KKGLGCVLMQQGKV+ YASRQLKSH+
Subjt:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLKSHK

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.6e-3231.84Show/hide
Query:  FSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAEHLR---MVLETLRANKLYAK
        F+ IDL  G+HQ+ +    + KT F +++GHYE++ M FGL NA   F   MN + +  L    +V++DDI+V+S    EHL+   +V E L    L  +
Subjt:  FSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAEHLR---MVLETLRANKLYAK

Query:  F--------------------------QNIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPF-VWSKAYDDSFQNLKQKLVTT
                                   + I+ I  +  P+   ++++FL L GYYR+F+ +F+ IA P+T+  +K       +  YD +F+ LK  +   
Subjt:  F--------------------------QNIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPF-VWSKAYDDSFQNLKQKLVTT

Query:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLKSHK
        P+L VPD +  F +  DA    LG VL Q G  ++Y SR L  H+
Subjt:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLKSHK

P0CT41 Transposon Tf2-12 polyprotein6.6e-2629.13Show/hide
Query:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAEHLRMVLETLR--------A
        +F+K+DL+S YH +R++  D  K  FR   G +E++VM +G++ A   F   +N +  +   + V+ ++DDIL++SK E+EH++ V + L+         
Subjt:  MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAEHLRMVLETLR--------A

Query:  NKLYAKF---------------------QNIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTT
        N+   +F                     +NI  +  W +P    ++R FL  V Y R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ 
Subjt:  NKLYAKF---------------------QNIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTT

Query:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQ
        PVL   D S   ++  DA    +G VL Q+
Subjt:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQ

P10401 Retrovirus-related Pol polyprotein from transposon gypsy1.5e-3031.62Show/hide
Query:  FSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAEHLR--------MVLETLRAN
        F+ +DL+SGYHQ+ + + D  KT F    G YEF  + FGL NAS++F   ++ V ++ +G    V++DD++++S+ E++H+R        ++   +R +
Subjt:  FSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAEHLR--------MVLETLRAN

Query:  KLYAKF---------------------QNIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTR-----------KGAPFVWSKAYDDSF
        +   +F                     + +K I  +  P  V KVRSFL L  YYR F++DF+ IA P+T + +           K  P  +++   ++F
Subjt:  KLYAKF---------------------QNIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTR-----------KGAPFVWSKAYDDSF

Query:  QNLKQKLVTTPV-LTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLK
        Q L+  L +  V L  PD    F +  DA   G+G VL Q+G+ IT  SR LK
Subjt:  QNLKQKLVTTPV-LTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLK

P20825 Retrovirus-related Pol polyprotein from transposon 2972.1e-3232.24Show/hide
Query:  FSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAEH---------------LRMV
        F+ IDL  G+HQ+ + +  I KT F ++ GHYE++ M FGL NA   F   MN + +  L    +V++DDI+++S    EH               L++ 
Subjt:  FSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAEH---------------LRMV

Query:  LETLRANKLYAKFQ--------------NIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSK-AYDDSFQNLKQKLVTT
        L+     K  A F                +K I S+  P+   ++R+FL L GYYR+F+ +++ IA P+T   +K       K  Y ++F+ LK  ++  
Subjt:  LETLRANKLYAKFQ--------------NIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSK-AYDDSFQNLKQKLVTT

Query:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLKSHK
        P+L +PD    FV+  DA    LG VL Q G  I++ SR L  H+
Subjt:  PVLTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLKSHK

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.4e-2830.59Show/hide
Query:  FSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAEH---LRMVLETL--------
        F+ +DL SG+HQ+ +K+SDIPKT F +  G YEF+ + FGL NA  +F  +++ + ++ +G    V+IDDI+V+S+    H   LR+VL +L        
Subjt:  FSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAEH---LRMVLETL--------

Query:  ------------------RANKLYAKFQNIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTR-----------KGAPFVWSKAYDDSF
                           A+ + A  + ++ I+    P+ V +++ FL +  YYR+F++D++++A PLT LTR              P    +    SF
Subjt:  ------------------RANKLYAKFQNIKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTR-----------KGAPFVWSKAYDDSF

Query:  QNLKQKLVTTPVLTVPDGSGSFVIYNDAFKKGLGCVLMQ----QGKVITYASRQL
         +LK  L ++ +L  P  +  F +  DA    +G VL Q    + + I Y SR L
Subjt:  QNLKQKLVTTPVLTVPDGSGSFVIYNDAFKKGLGCVLMQ----QGKVITYASRQL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein2.1e-1137.35Show/hide
Query:  IKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTTPVLTVPDGSGSFV
        ++ +  W  P   +++R FL L GYYRRFV+++ +I  PLT+L +K +   W++    +F+ LK  + T PVL +PD    FV
Subjt:  IKVITSWSRPSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTTPVLTVPDGSGSFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCTAAGATCGACCTTCGATCAGGATACCATCAGTTGAGGATTAAAGATAGTGATATACCAAAAACAGTCTTTCGTTCGAGATATGGGCATTATGAGTTCATTGT
GATGTCCTTTGGATTGACGAATGCTTCAACAATGTTTATGGATTTGATGAACAAAGTGTTTAAGGATTTCTTAGGCACTTTTGTAATTGTGTTTATTGATGATATTTTAG
TATATTCCAAGATAGAGGCAGAGCATTTACGCATGGTTCTAGAGACCCTTCGAGCTAATAAATTATATGCAAAGTTTCAAAATATAAAAGTTATTACCAGTTGGTCTCGA
CCTTCCATAGTTAGTAAAGTTCGTAGCTTTCTGGATTTAGTAGGCTATTATCGACGGTTTGTGGAGGACTTTTCTCGTATAGCTACTCCCCTTACTCAGTTGACCAGGAA
AGGGGCTCCATTTGTTTGGAGCAAGGCCTATGATGATAGTTTTCAGAACCTTAAACAGAAGCTCGTTACTACACCGGTTCTTACTGTACCTGATGGTTCAGGGAGTTTTG
TGATTTACAATGATGCTTTCAAGAAAGGTTTGGGTTGTGTTTTAATGCAGCAAGGTAAGGTCATCACTTATGCTTCTCGTCAGTTGAAGAGTCATAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCTAAGATCGACCTTCGATCAGGATACCATCAGTTGAGGATTAAAGATAGTGATATACCAAAAACAGTCTTTCGTTCGAGATATGGGCATTATGAGTTCATTGT
GATGTCCTTTGGATTGACGAATGCTTCAACAATGTTTATGGATTTGATGAACAAAGTGTTTAAGGATTTCTTAGGCACTTTTGTAATTGTGTTTATTGATGATATTTTAG
TATATTCCAAGATAGAGGCAGAGCATTTACGCATGGTTCTAGAGACCCTTCGAGCTAATAAATTATATGCAAAGTTTCAAAATATAAAAGTTATTACCAGTTGGTCTCGA
CCTTCCATAGTTAGTAAAGTTCGTAGCTTTCTGGATTTAGTAGGCTATTATCGACGGTTTGTGGAGGACTTTTCTCGTATAGCTACTCCCCTTACTCAGTTGACCAGGAA
AGGGGCTCCATTTGTTTGGAGCAAGGCCTATGATGATAGTTTTCAGAACCTTAAACAGAAGCTCGTTACTACACCGGTTCTTACTGTACCTGATGGTTCAGGGAGTTTTG
TGATTTACAATGATGCTTTCAAGAAAGGTTTGGGTTGTGTTTTAATGCAGCAAGGTAAGGTCATCACTTATGCTTCTCGTCAGTTGAAGAGTCATAAGTAG
Protein sequenceShow/hide protein sequence
MFSKIDLRSGYHQLRIKDSDIPKTVFRSRYGHYEFIVMSFGLTNASTMFMDLMNKVFKDFLGTFVIVFIDDILVYSKIEAEHLRMVLETLRANKLYAKFQNIKVITSWSR
PSIVSKVRSFLDLVGYYRRFVEDFSRIATPLTQLTRKGAPFVWSKAYDDSFQNLKQKLVTTPVLTVPDGSGSFVIYNDAFKKGLGCVLMQQGKVITYASRQLKSHK