CuGenDBv2

Gene ID	Cmc09g0242871
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr09:5241306..5241824
RNA-Seq Expression	Cmc09g0242871
Synteny	Cmc09g0242871
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031931.1 pol protein [Cucumis melo var. makuwa]

3.9e-79

83.72

Show/hide

Query:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER
        MDFITGL RTL+ FIVIWVVV+RLTKS HF+PGKSTY ASKWAQLY++EIVRLHGVPVSIV DRDAR TSKFWK LQ AM T LDFS  FHPQTDGQ ER
Subjt:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER

Query:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV
        LNQV+EDMLRA ALEFPGSWDSHLHLMEF+YNNS+Q TIGMTPFEALYGKCCRS ICW +V  QRLMGPELV
Subjt:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV

KAA0041424.1 pol protein [Cucumis melo var. makuwa]

2.3e-79

83.14

Show/hide

Query:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER
        MDFITGL RTL+ F VIWVVV+RLTKS HF+PGKSTY ASKWAQLY++EIVRLHGVPVSIVSDRDAR TSKFWK LQ AM T LDFS  FHPQTDGQ ER
Subjt:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER

Query:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV
        LNQV+EDMLRA ALEFPGSWDSHLHLMEF+YNNS+Q TIGM PFEALYGKCCRS +CWD+V  QRLMGPELV
Subjt:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV

KAA0043555.1 pol protein [Cucumis melo var. makuwa]

3.0e-79

84.3

Show/hide

Query:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER
        MDFITGL RTL+ F VIWVVV+RLTKS HF+PGKSTY ASKWAQLYL+EIVRLHGVPVSIVSDRDAR TSKFWK LQ AM T LDFS  FHPQTDGQ ER
Subjt:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER

Query:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV
        LNQV+EDMLRA ALEFPGSWDSHLHLMEF+YNNSFQ TIGM PFEALYGKCCRS ICW +V  QRLMGPELV
Subjt:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV

KAA0046943.1 pol protein [Cucumis melo var. makuwa]

6.7e-79

83.72

Show/hide

Query:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER
        MDFITGL RTL+ FIVIWVVV+RLTKS HF+PGKSTY ASKWAQLY++EIVRLH VPVSIVSDRDAR TSKFWK LQ AM T LDFS TFH QTDGQIER
Subjt:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER

Query:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV
        LNQV+EDMLRA ALEFPGSWDSHLHLMEF+YNN+FQ TIGMTPFEALYGKCCRS +CW +V  QRLMGPELV
Subjt:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV

KAA0053234.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

2.3e-79

83.72

Show/hide

Query:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER
        MDFITGL RTLK F VIWVVV+RLTKS HF+PGKSTY ASKWAQLY++EIVRLHGVPVSIVSDRDAR TSKFWK LQ AM T LDFS  FHPQTDGQ ER
Subjt:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER

Query:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV
        LNQV+EDMLRA ALEFPGSWDSHLHLMEF+YNNS+Q TIGM PFEALYGKCCRS +CWD+V  QRLMGPELV
Subjt:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SQU8 Reverse transcriptase

1.9e-79

83.72

Show/hide

Query:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER
        MDFITGL RTL+ FIVIWVVV+RLTKS HF+PGKSTY ASKWAQLY++EIVRLHGVPVSIV DRDAR TSKFWK LQ AM T LDFS  FHPQTDGQ ER
Subjt:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER

Query:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV
        LNQV+EDMLRA ALEFPGSWDSHLHLMEF+YNNS+Q TIGMTPFEALYGKCCRS ICW +V  QRLMGPELV
Subjt:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV

A0A5A7TDB5 Pol protein

1.1e-79

83.14

Show/hide

Query:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER
        MDFITGL RTL+ F VIWVVV+RLTKS HF+PGKSTY ASKWAQLY++EIVRLHGVPVSIVSDRDAR TSKFWK LQ AM T LDFS  FHPQTDGQ ER
Subjt:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER

Query:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV
        LNQV+EDMLRA ALEFPGSWDSHLHLMEF+YNNS+Q TIGM PFEALYGKCCRS +CWD+V  QRLMGPELV
Subjt:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV

A0A5A7TQ69 Reverse transcriptase

1.5e-79

84.3

Show/hide

Query:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER
        MDFITGL RTL+ F VIWVVV+RLTKS HF+PGKSTY ASKWAQLYL+EIVRLHGVPVSIVSDRDAR TSKFWK LQ AM T LDFS  FHPQTDGQ ER
Subjt:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER

Query:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV
        LNQV+EDMLRA ALEFPGSWDSHLHLMEF+YNNSFQ TIGM PFEALYGKCCRS ICW +V  QRLMGPELV
Subjt:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV

A0A5A7TTQ3 Pol protein

3.2e-79

83.72

Show/hide

Query:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER
        MDFITGL RTL+ FIVIWVVV+RLTKS HF+PGKSTY ASKWAQLY++EIVRLH VPVSIVSDRDAR TSKFWK LQ AM T LDFS TFH QTDGQIER
Subjt:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER

Query:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV
        LNQV+EDMLRA ALEFPGSWDSHLHLMEF+YNN+FQ TIGMTPFEALYGKCCRS +CW +V  QRLMGPELV
Subjt:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV

A0A5A7UDB1 Reverse transcriptase

1.1e-79

83.72

Show/hide

Query:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER
        MDFITGL RTLK F VIWVVV+RLTKS HF+PGKSTY ASKWAQLY++EIVRLHGVPVSIVSDRDAR TSKFWK LQ AM T LDFS  FHPQTDGQ ER
Subjt:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER

Query:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV
        LNQV+EDMLRA ALEFPGSWDSHLHLMEF+YNNS+Q TIGM PFEALYGKCCRS +CWD+V  QRLMGPELV
Subjt:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

3.2e-23

35.14

Show/hide

Query:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER
        MDFIT L  +   +  ++VVV+R +K    +P   +  A + A+++   ++   G P  I++D D   TS+ WK      + ++ FS+ + PQTDGQ ER
Subjt:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER

Query:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALY
         NQ VE +LR      P +W  H+ L++ SYNN+  +   MTPFE ++
Subjt:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALY

P0CT35 Transposon Tf2-2 polyprotein

3.2e-23

35.14

Show/hide

Query:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER
        MDFIT L  +   +  ++VVV+R +K    +P   +  A + A+++   ++   G P  I++D D   TS+ WK      + ++ FS+ + PQTDGQ ER
Subjt:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER

Query:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALY
         NQ VE +LR      P +W  H+ L++ SYNN+  +   MTPFE ++
Subjt:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALY

P0CT36 Transposon Tf2-3 polyprotein

3.2e-23

35.14

Show/hide

Query:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER
        MDFIT L  +   +  ++VVV+R +K    +P   +  A + A+++   ++   G P  I++D D   TS+ WK      + ++ FS+ + PQTDGQ ER
Subjt:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER

Query:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALY
         NQ VE +LR      P +W  H+ L++ SYNN+  +   MTPFE ++
Subjt:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALY

P0CT41 Transposon Tf2-12 polyprotein

3.2e-23

35.14

Show/hide

Query:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER
        MDFIT L  +   +  ++VVV+R +K    +P   +  A + A+++   ++   G P  I++D D   TS+ WK      + ++ FS+ + PQTDGQ ER
Subjt:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER

Query:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALY
         NQ VE +LR      P +W  H+ L++ SYNN+  +   MTPFE ++
Subjt:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALY

Q9UR07 Transposon Tf2-11 polyprotein

3.2e-23

35.14

Show/hide

Query:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER
        MDFIT L  +   +  ++VVV+R +K    +P   +  A + A+++   ++   G P  I++D D   TS+ WK      + ++ FS+ + PQTDGQ ER
Subjt:  MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIER

Query:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALY
         NQ VE +LR      P +W  H+ L++ SYNN+  +   MTPFE ++
Subjt:  LNQVVEDMLRAYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALY

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATTTCATTACAGGATTGTCTAGAACTCTGAAGGATTTTATAGTGATTTGGGTTGTTGTTAACAGGCTTACGAAATCAACACACTTCATCCCAGGGAAATCCACTTA
TGCTGCTAGCAAGTGGGCACAGCTATACTTGACTGAGATTGTGAGACTGCATGGGGTGCCAGTATCGATTGTTTCTGACAGAGATGCCCGTTTAACTTCTAAGTTCTGGA
AGAGACTTCAGGCTGCCATGGACACGATATTAGATTTCAGTATAACTTTTCACCCTCAGACTGATGGTCAAATTGAGCGTTTAAATCAAGTTGTAGAGGATATGTTGCGA
GCTTATGCATTAGAGTTTCCAGGTAGCTGGGATTCTCACTTACATTTGATGGAGTTTTCTTATAATAACAGTTTTCAGACTACCATTGGCATGACACCATTTGAGGCTCT
ATATGGAAAATGTTGTAGATCCCTTATTTGTTGGGACAAGGTTGTTGGACAAAGATTGATGGGTCCTGAGTTAGTTTAG

mRNA sequence

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Protein sequence

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MDFITGLSRTLKDFIVIWVVVNRLTKSTHFIPGKSTYAASKWAQLYLTEIVRLHGVPVSIVSDRDARLTSKFWKRLQAAMDTILDFSITFHPQTDGQIERLNQVVEDMLR
AYALEFPGSWDSHLHLMEFSYNNSFQTTIGMTPFEALYGKCCRSLICWDKVVGQRLMGPELV

Cmc09g0242871 (gene) of Melon (Charmono) v1.1 genome