CuGenDBv2

Gene ID	Cmc09g0242981
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr09:5371047..5372575
RNA-Seq Expression	Cmc09g0242981
Synteny	Cmc09g0242981
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0043565 - sequence-specific DNA binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domains	IPR043502 - DNA/RNA polymerase superfamily IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR041588 - Integrase zinc-binding domain IPR041373 - Reverse transcriptase, RNase H-like domain IPR036397 - Ribonuclease H superfamily IPR012337 - Ribonuclease H-like superfamily IPR000477 - Reverse transcriptase domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

1.4e-231

82.12

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH+EHLRM LQTLRDNKLYAKFSKCEFWLKQ+                         
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------

Query:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
                          YRRFVENFSRIATPLTQLTRKG PFVWSKACEDSFQ LKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK----------
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK          
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK----------

Query:  ------------------------------PTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH
                                      PTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDS VKTELLSEAHSSPFSMH
Subjt:  ------------------------------PTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH

Query:  PGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA
        PGSTKMY+D+KRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA
Subjt:  PGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA

Query:  SKWAQLYMS
        SKWAQLYMS
Subjt:  SKWAQLYMS

KAA0051051.1 reverse transcriptase [Cucumis melo var. makuwa]

5.8e-233

86.97

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH+EHLR+ LQTLRDNKLYAKFSKCEFWLKQ+                         
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------

Query:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
                          YRRFVENFSRIATPLTQLTRKG PFVWSKACEDSFQ LKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK-------PTL
        SRQLKSHEQ YPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFT KELN+RQRRWLELVKDYDCEILYHPGKANVVADALSRK       PTL
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK-------PTL

Query:  RQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVC
         QRIIDAQSNDPYLV+KRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVC
Subjt:  RQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVC

Query:  QQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMS
        QQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWA+LYMS
Subjt:  QQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMS

KAA0053234.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

2.2e-232

86.76

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH+EHLRM LQTLRDNKLYAKFSKCEFWLKQ+                         
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------

Query:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
                          YRRFVENFSRIATPLTQLTRKG PFVWSKACEDSFQ LKQKLVTAPVLTVP+GSGSFVIYSDA KKGLGCVLMQQGKVVAYA
Subjt:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK-------PTL
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK       PTL
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK-------PTL

Query:  RQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVC
        RQRIIDAQSNDPYLVEKRGLAE  QAVEFSLSSDGGLLFERRLCVPSD AVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVC
Subjt:  RQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVC

Query:  QQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMS
        QQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTL+GFTVIWVVVDRLTKSAHF+PGKSTYTASKWAQLYMS
Subjt:  QQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMS

KAA0062112.1 pol protein [Cucumis melo var. makuwa]

1.9e-231

82.12

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH+ HLRM LQTLRDNKLYAKFSKCEFWLKQ+                         
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------

Query:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
                          YRRFVENFSRIATPLTQLTRKG PFVWSKACEDSFQ LKQKLVTAPVLTVPDGSGSFVIYSD SKKGLGCVLMQQGKVVAYA
Subjt:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK----------
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK          
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK----------

Query:  ------------------------------PTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH
                                      PTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH
Subjt:  ------------------------------PTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH

Query:  PGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA
        PGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT+
Subjt:  PGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA

Query:  SKWAQLYMS
        SKWAQLYMS
Subjt:  SKWAQLYMS

TYK01613.1 pol protein [Cucumis melo var. makuwa]

3.8e-232

82.32

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH+EHLRM LQTLRDNKLYAKFSKCEFWLKQ+                         
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------

Query:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
                          YRRFVENFSRIATPLTQLTRKG PFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK----------
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK          
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK----------

Query:  ------------------------------PTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH
                                      PTLRQRIIDAQSNDPYLVEKRGLAEAGQ  EFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH
Subjt:  ------------------------------PTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH

Query:  PGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA
        PGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA
Subjt:  PGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA

Query:  SKWAQLYMS
        SKWAQLYMS
Subjt:  SKWAQLYMS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U330 Reverse transcriptase

7.0e-232

82.12

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH+EHLRM LQTLRDNKLYAKFSKCEFWLKQ+                         
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------

Query:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
                          YRRFVENFSRIATPLTQLTRKG PFVWSKACEDSFQ LKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK----------
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK          
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK----------

Query:  ------------------------------PTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH
                                      PTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDS VKTELLSEAHSSPFSMH
Subjt:  ------------------------------PTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH

Query:  PGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA
        PGSTKMY+D+KRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA
Subjt:  PGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA

Query:  SKWAQLYMS
        SKWAQLYMS
Subjt:  SKWAQLYMS

A0A5A7UC07 Reverse transcriptase

2.8e-233

86.97

Show/hide

Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH+EHLR+ LQTLRDNKLYAKFSKCEFWLKQ+                         
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------

Query:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
                          YRRFVENFSRIATPLTQLTRKG PFVWSKACEDSFQ LKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK-------PTL
        SRQLKSHEQ YPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFT KELN+RQRRWLELVKDYDCEILYHPGKANVVADALSRK       PTL
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK-------PTL

Query:  RQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVC
         QRIIDAQSNDPYLV+KRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVC
Subjt:  RQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVC

Query:  QQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMS
        QQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWA+LYMS
Subjt:  QQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMS

A0A5A7UDB1 Reverse transcriptase

1.1e-232

86.76

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH+EHLRM LQTLRDNKLYAKFSKCEFWLKQ+                         
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------

Query:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
                          YRRFVENFSRIATPLTQLTRKG PFVWSKACEDSFQ LKQKLVTAPVLTVP+GSGSFVIYSDA KKGLGCVLMQQGKVVAYA
Subjt:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK-------PTL
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK       PTL
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK-------PTL

Query:  RQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVC
        RQRIIDAQSNDPYLVEKRGLAE  QAVEFSLSSDGGLLFERRLCVPSD AVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVC
Subjt:  RQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVC

Query:  QQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMS
        QQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTL+GFTVIWVVVDRLTKSAHF+PGKSTYTASKWAQLYMS
Subjt:  QQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMS

A0A5A7V1N3 Reverse transcriptase

9.1e-232

82.12

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH+ HLRM LQTLRDNKLYAKFSKCEFWLKQ+                         
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------

Query:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
                          YRRFVENFSRIATPLTQLTRKG PFVWSKACEDSFQ LKQKLVTAPVLTVPDGSGSFVIYSD SKKGLGCVLMQQGKVVAYA
Subjt:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK----------
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK          
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK----------

Query:  ------------------------------PTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH
                                      PTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH
Subjt:  ------------------------------PTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH

Query:  PGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA
        PGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT+
Subjt:  PGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA

Query:  SKWAQLYMS
        SKWAQLYMS
Subjt:  SKWAQLYMS

A0A5D3BPI1 Reverse transcriptase

1.8e-232

82.32

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------
        MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEH+EHLRM LQTLRDNKLYAKFSKCEFWLKQ+                         
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------

Query:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
                          YRRFVENFSRIATPLTQLTRKG PFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK----------
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK          
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRK----------

Query:  ------------------------------PTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH
                                      PTLRQRIIDAQSNDPYLVEKRGLAEAGQ  EFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH
Subjt:  ------------------------------PTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH

Query:  PGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA
        PGSTKMYQDLKRVYWWRNMKREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA
Subjt:  PGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTA

Query:  SKWAQLYMS
        SKWAQLYMS
Subjt:  SKWAQLYMS

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

4.9e-57

29.25

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------
        M +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++  LQ L++  L    +KCEF   Q+                         
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------

Query:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----
                           R+F+   S++  PL  L +K V + W+     + + +KQ LV+ PVL   D S   ++ +DAS   +G VL Q+       
Subjt:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----

Query:  VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSR--
         V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR  
Subjt:  VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSR--

Query:  -----------------------KPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGST
                                   + +++   +ND  L+    L    + VE ++    GLL   +  + +P+D+ +   ++ + H     +HPG  
Subjt:  -----------------------KPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGST

Query:  KMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWA
         +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A
Subjt:  KMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWA

Query:  QLYMSR
        +++  R
Subjt:  QLYMSR

P0CT35 Transposon Tf2-2 polyprotein

4.9e-57

29.25

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------
        M +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++  LQ L++  L    +KCEF   Q+                         
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------

Query:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----
                           R+F+   S++  PL  L +K V + W+     + + +KQ LV+ PVL   D S   ++ +DAS   +G VL Q+       
Subjt:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----

Query:  VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSR--
         V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR  
Subjt:  VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSR--

Query:  -----------------------KPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGST
                                   + +++   +ND  L+    L    + VE ++    GLL   +  + +P+D+ +   ++ + H     +HPG  
Subjt:  -----------------------KPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGST

Query:  KMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWA
         +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A
Subjt:  KMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWA

Query:  QLYMSR
        +++  R
Subjt:  QLYMSR

P0CT36 Transposon Tf2-3 polyprotein

4.9e-57

29.25

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------
        M +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++  LQ L++  L    +KCEF   Q+                         
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------

Query:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----
                           R+F+   S++  PL  L +K V + W+     + + +KQ LV+ PVL   D S   ++ +DAS   +G VL Q+       
Subjt:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----

Query:  VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSR--
         V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR  
Subjt:  VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSR--

Query:  -----------------------KPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGST
                                   + +++   +ND  L+    L    + VE ++    GLL   +  + +P+D+ +   ++ + H     +HPG  
Subjt:  -----------------------KPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGST

Query:  KMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWA
         +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A
Subjt:  KMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWA

Query:  QLYMSR
        +++  R
Subjt:  QLYMSR

P0CT37 Transposon Tf2-4 polyprotein

4.9e-57

29.25

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------
        M +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++  LQ L++  L    +KCEF   Q+                         
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------

Query:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----
                           R+F+   S++  PL  L +K V + W+     + + +KQ LV+ PVL   D S   ++ +DAS   +G VL Q+       
Subjt:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----

Query:  VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSR--
         V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR  
Subjt:  VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSR--

Query:  -----------------------KPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGST
                                   + +++   +ND  L+    L    + VE ++    GLL   +  + +P+D+ +   ++ + H     +HPG  
Subjt:  -----------------------KPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGST

Query:  KMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWA
         +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A
Subjt:  KMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWA

Query:  QLYMSR
        +++  R
Subjt:  QLYMSR

P0CT41 Transposon Tf2-12 polyprotein

4.9e-57

29.25

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Query:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------
        M +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++  LQ L++  L    +KCEF   Q+                         
Subjt:  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQL-------------------------

Query:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----
                           R+F+   S++  PL  L +K V + W+     + + +KQ LV+ PVL   D S   ++ +DAS   +G VL Q+       
Subjt:  ------------------YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----

Query:  VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSR--
         V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR  
Subjt:  VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSR--

Query:  -----------------------KPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGST
                                   + +++   +ND  L+    L    + VE ++    GLL   +  + +P+D+ +   ++ + H     +HPG  
Subjt:  -----------------------KPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGST

Query:  KMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWA
         +   + R + W+ +++++ E+V  C  CQ  K+   KP G LQP+   E  WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A
Subjt:  KMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWA

Query:  QLYMSR
        +++  R
Subjt:  QLYMSR

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

1.2e-05

41.38

Show/hide

Query:  YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFV
        YRRFV+N+ +I  PLT+L +K     W++    +F+ LK  + T PVL +PD    FV
Subjt:  YRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGSFV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTTTTGGTTTGACGAATGCTCCGGCAGTATTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATCGACGATATCTTGAT
ATACTCCAAGACGGAGGCCGAACACAAGGAGCATTTACGTATGTTTTTGCAAACACTTCGGGATAATAAATTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGC
AGCTATATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGAAAGGGAGTTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTC
CAGACCCTTAAACAGAAGCTAGTTACCGCACCGGTTCTTACTGTACCCGATGGTTCTGGCAGTTTTGTGATTTATAGTGATGCTTCCAAGAAAGGTTTAGGTTGCGTTTT
GATGCAGCAGGGTAAGGTGGTCGCTTATGCGTCTCGTCAGTTGAAGAGTCATGAGCAGAATTACCCTACACATGATCTAGAGTTGGCAGCAGTGGTTTTTGCTTTGAAAA
TATGGAGGCATTACTTATATGGTGAAAAGATACAAATATTCACGGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAAGAATTGAATATGAGACAGCGGAGATGGCTT
GAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCAAATGTGGTAGCTGATGCTCTTAGTAGGAAGCCGACTTTGAGGCAAAGGATCATTGATGC
TCAGAGTAACGATCCTTATCTGGTTGAGAAACGTGGCCTAGCAGAAGCAGGGCAAGCGGTTGAGTTCTCATTATCCTCTGATGGTGGACTTTTGTTCGAGAGACGCCTCT
GTGTGCCGTCGGATAGCGCGGTTAAGACAGAATTATTATCTGAGGCTCACAGTTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTG
TATTGGTGGCGTAACATGAAGAGGGAAGTAGCAGAATTTGTTAGTAGATGCTTGGTGTGTCAGCAGGTTAAGGCACCAAGGCAGAAACCAGCGGGTTTATTACAACCCTT
GAGTATACCGGAATGGAAATGGGAAAACGTGTCCATGGATTTCATTACAGGACTGCCGAGGACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGGCTTACCA
AGTCAGCACACTTTGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACATGTCGAGATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHKEHLRMFLQTLRDNKLYAKFSKCEFWLKQLYRRFVENFSRIATPLTQLTRKGVPFVWSKACEDSF
QTLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWL
ELVKDYDCEILYHPGKANVVADALSRKPTLRQRIIDAQSNDPYLVEKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRV
YWWRNMKREVAEFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSR

Cmc09g0242981 (gene) of Melon (Charmono) v1.1 genome