; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0243021 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0243021
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr09:5416960..5418034
RNA-Seq ExpressionCmc09g0243021
SyntenyCmc09g0243021
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041373 - Reverse transcriptase, RNase H-like domain
IPR041588 - Integrase zinc-binding domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-18088.58Show/hide
Query:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
        +IYCDASRLG GC+LMQDGNVIAYASR+LKEHECNYP HDLELA VVLALKIWRHYLF EKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
Subjt:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY

Query:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG
        H GKANVVADALSRKS+LPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF                    QKK EKSKKGLEVEFELR DGAIVKQG
Subjt:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG

Query:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG
        RLCV NISELKNAILEEAHSSAYAMHP STKMYRTLKKTYWW  MKQEIAEYVDRCLICQQVKPV+  PGGFLNPLPVPEWKWEHIT+DFLFGLPRTSSG
Subjt:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG

Query:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF
        HDGIWVIVDRLTKTTRFIPIK TSTLDQLARLYVDKIVSQYGVPVSIVSDRDP+FTSKF
Subjt:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF

KAA0042295.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-18088.58Show/hide
Query:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
        +IYCDASRLG GC+LMQDGNVIAYASR+LKEHECNYP HDLELA VVLALKIWRHYLF EKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
Subjt:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY

Query:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG
        H GKANVVADALSRKS+LPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF                    QKK EKSKKGLEVEFELR DGAIVKQG
Subjt:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG

Query:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG
        RLCV NISELKNAILEEAHSSAYAMHP STKMYRTLKKTYWW  MKQEIAEYVDRCLICQQVKPV+  PGGFLNPLPVPEWKWEHIT+DFLFGLPRTSSG
Subjt:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG

Query:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF
        HDGIWVIVDRLTKTTRFIPIK TSTLDQLARLYVDKIVSQYGVPVSIVSDRDP+FTSKF
Subjt:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-18088.58Show/hide
Query:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
        +IYCDASRLG GC+LMQDGNVIAYASR+LKEHECNYP HDLELA VVLALKIWRHYLF EKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
Subjt:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY

Query:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG
        H GKANVVADALSRKS+LPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF                    QKK EKSKKGLEVEFELR DGAIVKQG
Subjt:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG

Query:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG
        RLCV NISELKNAILEEAHSSAYAMHP STKMYRTLKKTYWW  MKQEIAEYVDRCLICQQVKPV+  PGGFLNPLPVPEWKWEHIT+DFLFGLPRTSSG
Subjt:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG

Query:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF
        HDGIWVIVDRLTKTTRFIPIK TSTLDQLARLYVDKIVSQYGVPVSIVSDRDP+FTSKF
Subjt:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-18088.58Show/hide
Query:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
        +IYCDASRLG GC+LMQDGNVIAYASR+LKEHECNYP HDLELA VVLALKIWRHYLF EKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
Subjt:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY

Query:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG
        H GKANVVADALSRKS+LPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF                    QKK EKSKKGLEVEFELR DGAIVKQG
Subjt:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG

Query:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG
        RLCV NISELKNAILEEAHSSAYAMHP STKMYRTLKKTYWW  MKQEIAEYVDRCLICQQVKPV+  PGGFLNPLPVPEWKWEHIT+DFLFGLPRTSSG
Subjt:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG

Query:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF
        HDGIWVIVDRLTKTTRFIPIK TSTLDQLARLYVDKIVSQYGVPVSIVSDRDP+FTSKF
Subjt:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-18088.58Show/hide
Query:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
        +IYCDASRLG GC+LMQDGNVIAYASR+LKEHECNYP HDLELA VVLALKIWRHYLF EKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
Subjt:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY

Query:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG
        H GKANVVADALSRKS+LPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF                    QKK EKSKKGLEVEFELR DGAIVKQG
Subjt:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG

Query:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG
        RLCV NISELKNAILEEAHSSAYAMHP STKMYRTLKKTYWW  MKQEIAEYVDRCLICQQVKPV+  PGGFLNPLPVPEWKWEHIT+DFLFGLPRTSSG
Subjt:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG

Query:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF
        HDGIWVIVDRLTKTTRFIPIK TSTLDQLARLYVDKIVSQYGVPVSIVSDRDP+FTSKF
Subjt:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF

TrEMBL top hitse value%identityAlignment
A0A5A7T1Y5 Reverse transcriptase1.3e-18088.58Show/hide
Query:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
        +IYCDASRLG GC+LMQDGNVIAYASR+LKEHECNYP HDLELA VVLALKIWRHYLF EKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
Subjt:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY

Query:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG
        H GKANVVADALSRKS+LPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF                    QKK EKSKKGLEVEFELR DGAIVKQG
Subjt:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG

Query:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG
        RLCV NISELKNAILEEAHSSAYAMHP STKMYRTLKKTYWW  MKQEIAEYVDRCLICQQVKPV+  PGGFLNPLPVPEWKWEHIT+DFLFGLPRTSSG
Subjt:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG

Query:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF
        HDGIWVIVDRLTKTTRFIPIK TSTLDQLARLYVDKIVSQYGVPVSIVSDRDP+FTSKF
Subjt:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF

A0A5A7T3K4 Reverse transcriptase1.3e-18088.58Show/hide
Query:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
        +IYCDASRLG GC+LMQDGNVIAYASR+LKEHECNYP HDLELA VVLALKIWRHYLF EKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
Subjt:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY

Query:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG
        H GKANVVADALSRKS+LPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF                    QKK EKSKKGLEVEFELR DGAIVKQG
Subjt:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG

Query:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG
        RLCV NISELKNAILEEAHSSAYAMHP STKMYRTLKKTYWW  MKQEIAEYVDRCLICQQVKPV+  PGGFLNPLPVPEWKWEHIT+DFLFGLPRTSSG
Subjt:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG

Query:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF
        HDGIWVIVDRLTKTTRFIPIK TSTLDQLARLYVDKIVSQYGVPVSIVSDRDP+FTSKF
Subjt:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF

A0A5A7U2V7 Reverse transcriptase1.3e-18088.58Show/hide
Query:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
        +IYCDASRLG GC+LMQDGNVIAYASR+LKEHECNYP HDLELA VVLALKIWRHYLF EKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
Subjt:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY

Query:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG
        H GKANVVADALSRKS+LPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF                    QKK EKSKKGLEVEFELR DGAIVKQG
Subjt:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG

Query:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG
        RLCV NISELKNAILEEAHSSAYAMHP STKMYRTLKKTYWW  MKQEIAEYVDRCLICQQVKPV+  PGGFLNPLPVPEWKWEHIT+DFLFGLPRTSSG
Subjt:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG

Query:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF
        HDGIWVIVDRLTKTTRFIPIK TSTLDQLARLYVDKIVSQYGVPVSIVSDRDP+FTSKF
Subjt:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF

A0A5A7UUL6 Reverse transcriptase1.3e-18088.58Show/hide
Query:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
        +IYCDASRLG GC+LMQDGNVIAYASR+LKEHECNYP HDLELA VVLALKIWRHYLF EKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
Subjt:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY

Query:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG
        H GKANVVADALSRKS+LPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF                    QKK EKSKKGLEVEFELR DGAIVKQG
Subjt:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG

Query:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG
        RLCV NISELKNAILEEAHSSAYAMHP STKMYRTLKKTYWW  MKQEIAEYVDRCLICQQVKPV+  PGGFLNPLPVPEWKWEHIT+DFLFGLPRTSSG
Subjt:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG

Query:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF
        HDGIWVIVDRLTKTTRFIPIK TSTLDQLARLYVDKIVSQYGVPVSIVSDRDP+FTSKF
Subjt:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF

A0A5D3BHI1 Reverse transcriptase1.3e-18088.58Show/hide
Query:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
        +IYCDASRLG GC+LMQDGNVIAYASR+LKEHECNYP HDLELA VVLALKIWRHYLF EKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY
Subjt:  MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEY

Query:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG
        H GKANVVADALSRKS+LPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF                    QKK EKSKKGLEVEFELR DGAIVKQG
Subjt:  HLGKANVVADALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQF--------------------QKKLEKSKKGLEVEFELRIDGAIVKQG

Query:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG
        RLCV NISELKNAILEEAHSSAYAMHP STKMYRTLKKTYWW  MKQEIAEYVDRCLICQQVKPV+  PGGFLNPLPVPEWKWEHIT+DFLFGLPRTSSG
Subjt:  RLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSG

Query:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF
        HDGIWVIVDRLTKTTRFIPIK TSTLDQLARLYVDKIVSQYGVPVSIVSDRDP+FTSKF
Subjt:  HDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSKF

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.9e-4028.37Show/hide
Query:  MIYCDASRLGFGCMLMQDGN-----VIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFR--EKCHIFTDHKSL--KYIFDQKELNLRQRRWLELI
        ++  DAS +  G +L Q  +      + Y S K+ + + NY + D E+  ++ +LK WRHYL    E   I TDH++L  +   + +  N R  RW   +
Subjt:  MIYCDASRLGFGCMLMQDGN-----VIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFR--EKCHIFTDHKSL--KYIFDQKELNLRQRRWLELI

Query:  KDYDCTIEYHLGKANVVADALSR----KSKLPKSALCGI-----RVALLNELRGSKAVVTTEDSGSLLAQFQKKLEKSKKGLEVEFELRIDGAIVKQGRL
        +D++  I Y  G AN +ADALSR       +PK +         ++++ ++ +       T D+  L       L    K +E   +L+    I  + ++
Subjt:  KDYDCTIEYHLGKANVVADALSR----KSKLPKSALCGI-----RVALLNELRGSKAVVTTEDSGSLLAQFQKKLEKSKKGLEVEFELRIDGAIVKQGRL

Query:  CVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSGHD
         + N ++L   I+++ H     +HP    +   + + + W  ++++I EYV  C  CQ  K   H P G L P+P  E  WE +++DF+  LP  SSG++
Subjt:  CVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSGHD

Query:  GIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSK
         ++V+VDR +K    +P   + T +Q AR++  ++++ +G P  I++D D  FTS+
Subjt:  GIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSK

P0CT41 Transposon Tf2-12 polyprotein1.9e-4028.37Show/hide
Query:  MIYCDASRLGFGCMLMQDGN-----VIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFR--EKCHIFTDHKSL--KYIFDQKELNLRQRRWLELI
        ++  DAS +  G +L Q  +      + Y S K+ + + NY + D E+  ++ +LK WRHYL    E   I TDH++L  +   + +  N R  RW   +
Subjt:  MIYCDASRLGFGCMLMQDGN-----VIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFR--EKCHIFTDHKSL--KYIFDQKELNLRQRRWLELI

Query:  KDYDCTIEYHLGKANVVADALSR----KSKLPKSALCGI-----RVALLNELRGSKAVVTTEDSGSLLAQFQKKLEKSKKGLEVEFELRIDGAIVKQGRL
        +D++  I Y  G AN +ADALSR       +PK +         ++++ ++ +       T D+  L       L    K +E   +L+    I  + ++
Subjt:  KDYDCTIEYHLGKANVVADALSR----KSKLPKSALCGI-----RVALLNELRGSKAVVTTEDSGSLLAQFQKKLEKSKKGLEVEFELRIDGAIVKQGRL

Query:  CVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSGHD
         + N ++L   I+++ H     +HP    +   + + + W  ++++I EYV  C  CQ  K   H P G L P+P  E  WE +++DF+  LP  SSG++
Subjt:  CVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSGHD

Query:  GIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSK
         ++V+VDR +K    +P   + T +Q AR++  ++++ +G P  I++D D  FTS+
Subjt:  GIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSK

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein7.9e-4234.07Show/hide
Query:  DASRLGFGCMLMQDGN------VIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTI
        DAS+ G G +L +  N      V+ Y S+ L+  + NYP  +LEL G++ AL  +R+ L  +   + TDH SL  + ++ E   R +RWL+ +  YD T+
Subjt:  DASRLGFGCMLMQDGN------VIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTI

Query:  EYHLGKANVVADALSR------------------KSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQFQKKLEKS---KKGLEVEFELRIDGAIV
        EY  G  NVVADA+SR                  KS      LC   +  + EL  ++  VT ED  S    +QKKLE S   +K   +E E+     I 
Subjt:  EYHLGKANVVADALSR------------------KSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQFQKKLEKS---KKGLEVEFELRIDGAIV

Query:  KQGRLCVLNISELKNAILEEAHS-SAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPR
         Q RL V+ I + +NA++   H  + +  H   T     +   Y+WP+++  I +Y+  C+ CQ +K  +    G L PLP+ E +W  I++DF+ GLP 
Subjt:  KQGRLCVLNISELKNAILEEAHS-SAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPR

Query:  TSSGHDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTS
        TS+  + I V+VDR +K   FI  + T    QL  L    I S +G P +I SDRD + T+
Subjt:  TSSGHDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTS

Q99315 Transposon Ty3-G Gag-Pol polyprotein7.9e-4234.07Show/hide
Query:  DASRLGFGCMLMQDGN------VIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTI
        DAS+ G G +L +  N      V+ Y S+ L+  + NYP  +LEL G++ AL  +R+ L  +   + TDH SL  + ++ E   R +RWL+ +  YD T+
Subjt:  DASRLGFGCMLMQDGN------VIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTI

Query:  EYHLGKANVVADALSR------------------KSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQFQKKLEKS---KKGLEVEFELRIDGAIV
        EY  G  NVVADA+SR                  KS      LC   +  + EL  ++  VT ED  S    +QKKLE S   +K   +E E+     I 
Subjt:  EYHLGKANVVADALSR------------------KSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQFQKKLEKS---KKGLEVEFELRIDGAIV

Query:  KQGRLCVLNISELKNAILEEAHS-SAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPR
         Q RL V+ I + +NA++   H  + +  H   T     +   Y+WP+++  I +Y+  C+ CQ +K  +    G L PLP+ E +W  I++DF+ GLP 
Subjt:  KQGRLCVLNISELKNAILEEAHS-SAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPR

Query:  TSSGHDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTS
        TS+  + I V+VDR +K   FI  + T    QL  L    I S +G P +I SDRD + T+
Subjt:  TSSGHDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTS

Q9UR07 Transposon Tf2-11 polyprotein1.9e-4028.37Show/hide
Query:  MIYCDASRLGFGCMLMQDGN-----VIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFR--EKCHIFTDHKSL--KYIFDQKELNLRQRRWLELI
        ++  DAS +  G +L Q  +      + Y S K+ + + NY + D E+  ++ +LK WRHYL    E   I TDH++L  +   + +  N R  RW   +
Subjt:  MIYCDASRLGFGCMLMQDGN-----VIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFR--EKCHIFTDHKSL--KYIFDQKELNLRQRRWLELI

Query:  KDYDCTIEYHLGKANVVADALSR----KSKLPKSALCGI-----RVALLNELRGSKAVVTTEDSGSLLAQFQKKLEKSKKGLEVEFELRIDGAIVKQGRL
        +D++  I Y  G AN +ADALSR       +PK +         ++++ ++ +       T D+  L       L    K +E   +L+    I  + ++
Subjt:  KDYDCTIEYHLGKANVVADALSR----KSKLPKSALCGI-----RVALLNELRGSKAVVTTEDSGSLLAQFQKKLEKSKKGLEVEFELRIDGAIVKQGRL

Query:  CVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSGHD
         + N ++L   I+++ H     +HP    +   + + + W  ++++I EYV  C  CQ  K   H P G L P+P  E  WE +++DF+  LP  SSG++
Subjt:  CVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTYWWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSGHD

Query:  GIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSK
         ++V+VDR +K    +P   + T +Q AR++  ++++ +G P  I++D D  FTS+
Subjt:  GIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSDRDPKFTSK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTATTGTGATGCTTCAAGGCTAGGATTTGGTTGTATGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGAAATTGAAGGAGCATGAGTGTAATTACCC
TATCCATGATCTTGAGCTAGCAGGAGTTGTTTTAGCACTAAAAATCTGGAGACACTATTTGTTCAGGGAAAAGTGCCATATTTTCACAGATCATAAAAGTCTGAAGTATA
TTTTTGATCAGAAAGAGCTAAATCTAAGACAAAGGCGATGGCTAGAACTGATTAAAGATTATGATTGTACTATAGAGTATCATCTAGGTAAGGCCAACGTAGTAGCGGAT
GCATTAAGTAGGAAGTCAAAACTTCCGAAGAGTGCCTTGTGTGGTATTCGAGTAGCTTTGTTGAATGAGTTAAGGGGTTCCAAGGCAGTAGTAACTACAGAGGATTCAGG
AAGTCTCTTAGCTCAATTTCAGAAGAAGCTTGAGAAATCCAAGAAAGGCTTAGAGGTGGAGTTTGAGCTGAGAATAGATGGAGCCATTGTTAAACAAGGAAGATTATGTG
TTCTGAATATCAGTGAGCTTAAGAATGCTATTCTAGAAGAAGCTCATAGTTCAGCTTACGCTATGCATCCAAGTAGCACCAAGATGTACAGAACTTTAAAGAAGACTTAT
TGGTGGCCTAGAATGAAACAAGAGATAGCTGAATATGTTGATAGATGTTTGATTTGTCAACAGGTTAAACCAGTAAAACATAGTCCAGGAGGATTTCTTAATCCTTTGCC
AGTGCCAGAGTGGAAATGGGAGCATATTACTATAGATTTTCTATTTGGATTACCTCGTACATCCAGTGGACATGATGGTATATGGGTAATAGTAGACAGACTCACCAAGA
CGACACGATTTATACCGATTAAAGCGACATCTACGTTAGATCAGCTAGCTAGATTGTATGTTGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGAT
AGGGATCCGAAGTTTACTTCTAAATTTTTGGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTTATTGTGATGCTTCAAGGCTAGGATTTGGTTGTATGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGAAATTGAAGGAGCATGAGTGTAATTACCC
TATCCATGATCTTGAGCTAGCAGGAGTTGTTTTAGCACTAAAAATCTGGAGACACTATTTGTTCAGGGAAAAGTGCCATATTTTCACAGATCATAAAAGTCTGAAGTATA
TTTTTGATCAGAAAGAGCTAAATCTAAGACAAAGGCGATGGCTAGAACTGATTAAAGATTATGATTGTACTATAGAGTATCATCTAGGTAAGGCCAACGTAGTAGCGGAT
GCATTAAGTAGGAAGTCAAAACTTCCGAAGAGTGCCTTGTGTGGTATTCGAGTAGCTTTGTTGAATGAGTTAAGGGGTTCCAAGGCAGTAGTAACTACAGAGGATTCAGG
AAGTCTCTTAGCTCAATTTCAGAAGAAGCTTGAGAAATCCAAGAAAGGCTTAGAGGTGGAGTTTGAGCTGAGAATAGATGGAGCCATTGTTAAACAAGGAAGATTATGTG
TTCTGAATATCAGTGAGCTTAAGAATGCTATTCTAGAAGAAGCTCATAGTTCAGCTTACGCTATGCATCCAAGTAGCACCAAGATGTACAGAACTTTAAAGAAGACTTAT
TGGTGGCCTAGAATGAAACAAGAGATAGCTGAATATGTTGATAGATGTTTGATTTGTCAACAGGTTAAACCAGTAAAACATAGTCCAGGAGGATTTCTTAATCCTTTGCC
AGTGCCAGAGTGGAAATGGGAGCATATTACTATAGATTTTCTATTTGGATTACCTCGTACATCCAGTGGACATGATGGTATATGGGTAATAGTAGACAGACTCACCAAGA
CGACACGATTTATACCGATTAAAGCGACATCTACGTTAGATCAGCTAGCTAGATTGTATGTTGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGAT
AGGGATCCGAAGTTTACTTCTAAATTTTTGGCCTAG
Protein sequenceShow/hide protein sequence
MIYCDASRLGFGCMLMQDGNVIAYASRKLKEHECNYPIHDLELAGVVLALKIWRHYLFREKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDCTIEYHLGKANVVAD
ALSRKSKLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQFQKKLEKSKKGLEVEFELRIDGAIVKQGRLCVLNISELKNAILEEAHSSAYAMHPSSTKMYRTLKKTY
WWPRMKQEIAEYVDRCLICQQVKPVKHSPGGFLNPLPVPEWKWEHITIDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKATSTLDQLARLYVDKIVSQYGVPVSIVSD
RDPKFTSKFLA