CuGenDBv2

Gene ID	Cmc09g0243071
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr09:5520475..5522091
RNA-Seq Expression	Cmc09g0243071
Synteny	Cmc09g0243071
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

4.0e-273

90.71

Show/hide

Query:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK
        MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVVFRKPGFAEVVFRG+RKA+SRSLIS+LK
Subjt:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK

Query:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
        +EKLLRKGCTAFL HIVVVQREKLKPEDVP+VK+FLDVFPDDLSGLPPDREIEFTIELLP TAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
Subjt:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW

Query:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
        GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRE DIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
Subjt:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL

Query:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
        MNRIFHRYLDQFVIV IDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK               SAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
Subjt:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL

Query:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD
        AGYYRRFIEDFSRLALPL ALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLG VLMQDG VIAYASRQLKEHECNYPTHD
Subjt:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD

Query:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK
        LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFD+K
Subjt:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK

KAA0037582.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

4.0e-273

90.71

Show/hide

Query:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK
        MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVVFRKPGFAEVVFRG+RKA+SRSLIS+LK
Subjt:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK

Query:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
        +EKLLRKGCTAFL HIVVVQREKLKPEDVP+VK+FLDVFPDDLSGLPPDREIEFTIELLP TAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
Subjt:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW

Query:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
        GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRE DIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
Subjt:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL

Query:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
        MNRIFHRYLDQFVIV IDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK               SAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
Subjt:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL

Query:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD
        AGYYRRFIEDFSRLALPL ALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLG VLMQDG VIAYASRQLKEHECNYPTHD
Subjt:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD

Query:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK
        LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFD+K
Subjt:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK

KAA0041108.1 reverse transcriptase [Cucumis melo var. makuwa]

4.0e-273

90.71

Show/hide

Query:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK
        MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVVFRKPGFAEVVFRG+RKA+SRSLIS+LK
Subjt:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK

Query:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
        +EKLLRKGCTAFL HIVVVQREKLKPEDVP+VK+FLDVFPDDLSGLPPDREIEFTIELLP TAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
Subjt:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW

Query:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
        GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRE DIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
Subjt:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL

Query:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
        MNRIFHRYLDQFVIV IDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK               SAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
Subjt:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL

Query:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD
        AGYYRRFIEDFSRLALPL ALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLG VLMQDG VIAYASRQLKEHECNYPTHD
Subjt:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD

Query:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK
        LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFD+K
Subjt:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK

KAA0056684.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

4.0e-273

90.71

Show/hide

Query:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK
        MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVVFRKPGFAEVVFRG+RKA+SRSLIS+LK
Subjt:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK

Query:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
        +EKLLRKGCTAFL HIVVVQREKLKPEDVP+VK+FLDVFPDDLSGLPPDREIEFTIELLP TAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
Subjt:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW

Query:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
        GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRE DIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
Subjt:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL

Query:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
        MNRIFHRYLDQFVIV IDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK               SAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
Subjt:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL

Query:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD
        AGYYRRFIEDFSRLALPL ALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLG VLMQDG VIAYASRQLKEHECNYPTHD
Subjt:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD

Query:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK
        LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFD+K
Subjt:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK

TYK27507.1 reverse transcriptase [Cucumis melo var. makuwa]

4.0e-273

90.71

Show/hide

Query:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK
        MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVVFRKPGFAEVVFRG+RKA+SRSLIS+LK
Subjt:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK

Query:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
        +EKLLRKGCTAFL HIVVVQREKLKPEDVP+VK+FLDVFPDDLSGLPPDREIEFTIELLP TAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
Subjt:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW

Query:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
        GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRE DIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
Subjt:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL

Query:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
        MNRIFHRYLDQFVIV IDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK               SAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
Subjt:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL

Query:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD
        AGYYRRFIEDFSRLALPL ALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLG VLMQDG VIAYASRQLKEHECNYPTHD
Subjt:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD

Query:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK
        LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFD+K
Subjt:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1Y5 Reverse transcriptase

1.9e-273

90.71

Show/hide

Query:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK
        MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVVFRKPGFAEVVFRG+RKA+SRSLIS+LK
Subjt:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK

Query:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
        +EKLLRKGCTAFL HIVVVQREKLKPEDVP+VK+FLDVFPDDLSGLPPDREIEFTIELLP TAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
Subjt:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW

Query:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
        GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRE DIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
Subjt:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL

Query:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
        MNRIFHRYLDQFVIV IDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK               SAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
Subjt:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL

Query:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD
        AGYYRRFIEDFSRLALPL ALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLG VLMQDG VIAYASRQLKEHECNYPTHD
Subjt:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD

Query:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK
        LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFD+K
Subjt:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK

A0A5A7U2V7 Reverse transcriptase

1.9e-273

90.71

Show/hide

Query:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK
        MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVVFRKPGFAEVVFRG+RKA+SRSLIS+LK
Subjt:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK

Query:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
        +EKLLRKGCTAFL HIVVVQREKLKPEDVP+VK+FLDVFPDDLSGLPPDREIEFTIELLP TAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
Subjt:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW

Query:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
        GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRE DIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
Subjt:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL

Query:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
        MNRIFHRYLDQFVIV IDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK               SAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
Subjt:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL

Query:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD
        AGYYRRFIEDFSRLALPL ALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLG VLMQDG VIAYASRQLKEHECNYPTHD
Subjt:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD

Query:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK
        LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFD+K
Subjt:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK

A0A5A7UNA3 Reverse transcriptase

1.9e-273

90.71

Show/hide

Query:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK
        MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVVFRKPGFAEVVFRG+RKA+SRSLIS+LK
Subjt:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK

Query:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
        +EKLLRKGCTAFL HIVVVQREKLKPEDVP+VK+FLDVFPDDLSGLPPDREIEFTIELLP TAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
Subjt:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW

Query:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
        GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRE DIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
Subjt:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL

Query:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
        MNRIFHRYLDQFVIV IDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK               SAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
Subjt:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL

Query:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD
        AGYYRRFIEDFSRLALPL ALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLG VLMQDG VIAYASRQLKEHECNYPTHD
Subjt:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD

Query:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK
        LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFD+K
Subjt:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK

A0A5A7VD61 Reverse transcriptase

1.9e-273

90.71

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Query:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK
        MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVVFRKPGFAEVVFRG+RKA+SRSLIS+LK
Subjt:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK

Query:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
        +EKLLRKGCTAFL HIVVVQREKLKPEDVP+VK+FLDVFPDDLSGLPPDREIEFTIELLP TAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
Subjt:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW

Query:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
        GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRE DIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
Subjt:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL

Query:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
        MNRIFHRYLDQFVIV IDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK               SAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
Subjt:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL

Query:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD
        AGYYRRFIEDFSRLALPL ALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLG VLMQDG VIAYASRQLKEHECNYPTHD
Subjt:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD

Query:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK
        LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFD+K
Subjt:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK

A0A5D3BHI1 Reverse transcriptase

1.9e-273

90.71

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Query:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK
        MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ                     RKEVVFRKPGFAEVVFRG+RKA+SRSLIS+LK
Subjt:  MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQ---------------------RKEVVFRKPGFAEVVFRGVRKAISRSLISILK

Query:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
        +EKLLRKGCTAFL HIVVVQREKLKPEDVP+VK+FLDVFPDDLSGLPPDREIEFTIELLP TAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW
Subjt:  SEKLLRKGCTAFLVHIVVVQREKLKPEDVPMVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPW

Query:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
        GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRE DIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL
Subjt:  GAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDL

Query:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
        MNRIFHRYLDQFVIV IDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK               SAKGVSVDPQKVEAVVNWERPISATEVRSFLGL
Subjt:  MNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGL

Query:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD
        AGYYRRFIEDFSRLALPL ALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLG VLMQDG VIAYASRQLKEHECNYPTHD
Subjt:  AGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHD

Query:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK
        LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFD+K
Subjt:  LELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

2.7e-70

36.51

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Query:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGT-----LRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKT
        +E++ Q+Q+++++G IR S SP+ +P+  V KK         R+ IDYR+LN++T+ +++P+P +D++  +L     F+ IDL  G+HQ+++    ++KT
Subjt:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGT-----LRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKT

Query:  AFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGV
        AF T++GHYE+  MPFGL NAPA F   MN I    L++  +V +DDI+V+S   + H + L +V + L +  L  +  K               +  G+
Subjt:  AFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGV

Query:  SVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLIALTRKNVKFEWSD-KCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
          +P+K+EA+  +  P    E+++FLGL GYYR+FI +F+ +A P+    +KN+K + ++ + + +F++LK  +   PIL +P   K + +  DAS + L
Subjt:  SVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLIALTRKNVKFEWSD-KCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GSVLMQDGIVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK
        G+VL QDG  ++Y SR L EHE NY T + EL A+V A K +RHYL G    I +DH+ L +++  K
Subjt:  GSVLMQDGIVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK

P20825 Retrovirus-related Pol polyprotein from transposon 297

9.2e-71

37.34

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Query:  APISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKD-----GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRS
        +PI    Y +A +   E++ Q+QE++++G IR S SP+ +P   V KK         R+ IDYR+LN++TI ++YP+P +D++  +L     F+ IDL  
Subjt:  APISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKD-----GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRS

Query:  GYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK-----
        G+HQ+++ E  I+KTAF T+ GHYE+  MPFGL NAPA F   MN I    L++  +V +DDI+++S     H   +++V   L +  L  +  K     
Subjt:  GYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSK-----

Query:  ---------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCE--QSFQELKKRLVTAPILALPV
                  +  G+  +P KV+A+V++  P    E+R+FLGL GYYR+FI +++ +A P+ +  +K  K + + K E  ++F++LK  ++  PIL LP 
Subjt:  ---------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCE--QSFQELKKRLVTAPILALPV

Query:  TGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK
          K +V+  DAS L LG+VL Q+G  I++ SR L +HE NY   + EL A+V A K +RHYL G +  I +DH+ L+++ + K
Subjt:  TGKDYVIYCDASRLGLGSVLMQDGIVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

9.8e-65

36.39

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Query:  KKFLDVFPDDLSGLPPDRE---IEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIR
        +K+ ++  +DL   P D     ++  IE+ P        PY +     +E+   +Q+L+D  +I PS SP  +PV+ V KKDGT RLC+DYR LNK TI 
Subjt:  KKFLDVFPDDLSGLPPDRE---IEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIR

Query:  NKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVIIDDILVYSVDRES
        + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KTAF T  G YE+ VMPFGL NAP+ F   M   F     +FV V +DDIL++S   E 
Subjt:  NKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVIIDDILVYSVDRES

Query:  HEEHLRIVLQTLREKQLYAKFS--KFSAK-----GVSVDPQKV-------EAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLIALTRKNVKFE
        H +HL  VL+ L+ + L  K    KF+++     G S+  QK+        A+ ++  P +  + + FLG+  YYRRFI + S++A P+        K +
Subjt:  HEEHLRIVLQTLREKQLYAKFS--KFSAK-----GVSVDPQKV-------EAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLIALTRKNVKFE

Query:  WSDKCEQSFQELKKRLVTAPILALPVTGK-DYVIYCDASRLGLGSVLMQDGI------VIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKC
        W++K +++ ++LK  L  +P+L +P   K +Y +  DAS+ G+G+VL +         V+ Y S+ L+  + NYP  +LEL  ++ AL  +R+ L G+  
Subjt:  WSDKCEQSFQELKKRLVTAPILALPVTGK-DYVIYCDASRLGLGSVLMQDGI------VIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKC

Query:  HIFTDHKSLKYIFDK
         + TDH SL  + +K
Subjt:  HIFTDHKSLKYIFDK

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

3.4e-65

35.61

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Query:  MVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKK-----DGTLRLCIDYRQLNK
        ++ +F  +F   LSG+  +  ++  I    +  PI    Y    +   E++ Q+ EL+  G IRPS SP+ +P+  V KK     +   R+ +D+++LN 
Subjt:  MVKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKK-----DGTLRLCIDYRQLNK

Query:  VTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVIIDDILVYSV
        VTI + YP+P I+     L  A  F+ +DL SG+HQ+ ++E DI KTAF T  G YEF  +PFGL NAPA+F  +++ I   ++ +   V IDDI+V+S 
Subjt:  VTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVIIDDILVYSV

Query:  DRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLIALTR--
        D ++H ++LR+VL +L +  L     K               +A G+  DP+KV A+     P S  E++ FLG+  YYR+FI+D++++A PL  LTR  
Subjt:  DRESHEEHLRIVLQTLREKQLYAKFSK--------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLIALTR--

Query:  -KNVKFEWSDKCE--------QSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQD----GIVIAYASRQLKEHECNYPTHDLELAAVVLAL
          N+K   S K          QSF +LK  L ++ ILA P   K + +  DAS   +G+VL QD       IAY SR L + E NY T + E+ A++ +L
Subjt:  -KNVKFEWSDKCE--------QSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVLMQD----GIVIAYASRQLKEHECNYPTHDLELAAVVLAL

Query:  KIWRHYLFGE-KCHIFTDHKSLKY
           R YL+G     ++TDH+ L +
Subjt:  KIWRHYLFGE-KCHIFTDHKSLKY

Q99315 Transposon Ty3-G Gag-Pol polyprotein

1.7e-64

36.39

Show/hide

Query:  KKFLDVFPDDLSGLPPDRE---IEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIR
        +K+ ++  +DL   P D     ++  IE+ P        PY +     +E+   +Q+L+D  +I PS SP  +PV+ V KKDGT RLC+DYR LNK TI 
Subjt:  KKFLDVFPDDLSGLPPDRE---IEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIR

Query:  NKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVIIDDILVYSVDRES
        + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KTAF T  G YE+ VMPFGL NAP+ F   M   F     +FV V +DDIL++S   E 
Subjt:  NKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVIIDDILVYSVDRES

Query:  HEEHLRIVLQTLREKQLYAKFS--KFSAK-----GVSVDPQKV-------EAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLIALTRKNVKFE
        H +HL  VL+ L+ + L  K    KF+++     G S+  QK+        A+ ++  P +  + + FLG+  YYRRFI + S++A P+        K +
Subjt:  HEEHLRIVLQTLREKQLYAKFS--KFSAK-----GVSVDPQKV-------EAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLIALTRKNVKFE

Query:  WSDKCEQSFQELKKRLVTAPILALPVTGK-DYVIYCDASRLGLGSVLMQDGI------VIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKC
        W++K +++  +LK  L  +P+L +P   K +Y +  DAS+ G+G+VL +         V+ Y S+ L+  + NYP  +LEL  ++ AL  +R+ L G+  
Subjt:  WSDKCEQSFQELKKRLVTAPILALPVTGK-DYVIYCDASRLGLGSVLMQDGI------VIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKC

Query:  HIFTDHKSLKYIFDK
         + TDH SL  + +K
Subjt:  HIFTDHKSLKYIFDK

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

2.2e-19

39.52

Show/hide

Query:  HLRIVLQTLREKQLYAKFSK----------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLIALTRKNVKFEW
        HL +VLQ   + Q YA   K                 S +GVS DP K+EA+V W  P + TE+R FLGL GYYRRF++++ ++  PL  L +KN   +W
Subjt:  HLRIVLQTLREKQLYAKFSK----------------FSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLIALTRKNVKFEW

Query:  SDKCEQSFQELKKRLVTAPILALP
        ++    +F+ LK  + T P+LALP
Subjt:  SDKCEQSFQELKKRLVTAPILALP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTAGAGCCTTTATCTGAGGGGTTAGCTATATACACTCCAGTTGGTGACGTTTTACTTGTTAATGAGGTGTTACGTAATTGTGAAGTTTTAGTAGAAGGTATCAGTTT
GCTAGTGGACTTGTTACCACTAGAGTTGCAGAGGAAGGAAGTGGTTTTCAGAAAACCAGGCTTTGCTGAAGTGGTTTTTAGAGGTGTGAGGAAGGCCATTTCTAGAAGTT
TAATCTCAATTTTGAAATCTGAGAAATTACTAAGGAAGGGTTGCACAGCGTTTCTTGTACACATCGTAGTAGTGCAGAGAGAAAAACTAAAGCCGGAAGATGTTCCTATG
GTGAAAAAGTTTCTTGATGTATTTCCAGATGATCTGTCAGGTTTGCCACCTGATAGAGAGATTGAGTTCACCATTGAATTATTACCAGAAACAGCACCTATTTCACAGGC
CCCGTATAGAATGGCTCCAAGCGAGCTAAAAGAATTAAAGATGCAGTTACAAGAACTAGTTGACAAAGGATACATCAGGCCTAGTGTTTCGCCGTGGGGAGCACCAGTGC
TTTTTGTGAAAAAGAAAGATGGTACCCTAAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCCTTTACCACGCATCGATGACTTATTT
GATCAACTAAGGGGAGCAGCGTTGTTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATTAGATATTGCTAAAACAGCATTTAGAACAAGGTA
TGGGCATTATGAGTTTCGAGTTATGCCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCGGTATTTAGATCAGTTTGTGATTG
TGATCATTGATGATATATTAGTTTACTCAGTTGACAGAGAATCTCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGAAAAACAGTTATACGCTAAGTTCAGC
AAATTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAATTAGTGCGACAGAAGTACGTAGTTTCCTGGGTTTGGCAGG
ATACTATAGGCGTTTTATTGAGGATTTCTCTCGATTGGCATTGCCTTTGATCGCTTTGACAAGGAAGAATGTTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTC
AGGAATTGAAGAAAAGACTAGTTACAGCACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTCAAGGCTAGGATTAGGTTCTGTGCTT
ATGCAAGATGGGATTGTAATAGCTTATGCTTCAAGGCAGTTGAAGGAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCAGTTGTTTTAGCACTAAAAAT
CTGGAGACACTATTTGTTCGGGGAAAAGTGCCATATTTTCACAGATCATAAAAGTCTGAAGTATATTTTTGATAAAAAATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLEPLSEGLAIYTPVGDVLLVNEVLRNCEVLVEGISLLVDLLPLELQRKEVVFRKPGFAEVVFRGVRKAISRSLISILKSEKLLRKGCTAFLVHIVVVQREKLKPEDVPM
VKKFLDVFPDDLSGLPPDREIEFTIELLPETAPISQAPYRMAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLF
DQLRGAALFSKIDLRSGYHQLKVRELDIAKTAFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVIIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFS
KFSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLIALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGSVL
MQDGIVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDKK

Cmc09g0243071 (gene) of Melon (Charmono) v1.1 genome