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Cmc09g0243321 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0243321
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr09:5868191..5868478
RNA-Seq ExpressionCmc09g0243321
SyntenyCmc09g0243321
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR025314 - Domain of unknown function DUF4219


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026102.1 putative copia-type polyprotein [Cucumis melo var. makuwa]2.7e-45100Show/hide
Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
KAA0038956.1 copia protein [Cucumis melo var. makuwa]1.3e-4498.94Show/hide
Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
        MANNNLVP QVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
KAA0051409.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.7e-45100Show/hide
Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
KAA0062322.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.7e-45100Show/hide
Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
TYK13816.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.7e-45100Show/hide
Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
TrEMBL top hitse value%identityAlignment
A0A5A7SLT1 Putative copia-type polyprotein1.3e-45100Show/hide
Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
A0A5A7TA92 Copia protein6.4e-4598.94Show/hide
Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
        MANNNLVP QVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
A0A5A7UDA0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-45100Show/hide
Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
A0A5A7V277 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-45100Show/hide
Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
A0A5D3CTU3 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-45100Show/hide
Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48720.1 unknown protein3.3e-2554.35Show/hide
Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTA
        MA+NN VPFQVP LTK NY +W +RMKA+LG+ DVW+IV  G+ EPE++ +L+Q Q++ L+++RK+D+KAL +I+Q +D++ FEK+  AT+A
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAACAACAATTTAGTTCCCTTCCAAGTACCTCGACTTACGAAAGAAAATTATAGTAGTTGGTGTATTCGAATGAAAGCTCTACTTGGTTCACAAGATGTGTGGGA
CATTGTTAGTAATGGTTATGAAGAACCAGAAAGTGATGCAGCTTTGAATCAAGCTCAACGAGAAGCTTTACAAAATACAAGAAAAAAAGATCAAAAGGCTCTCACCATCA
TTCATCAAGCCATTGATGATAACAATTTTGAGAAAATTTCTGGAGCAACTACTGCATATCAAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAACAACAATTTAGTTCCCTTCCAAGTACCTCGACTTACGAAAGAAAATTATAGTAGTTGGTGTATTCGAATGAAAGCTCTACTTGGTTCACAAGATGTGTGGGA
CATTGTTAGTAATGGTTATGAAGAACCAGAAAGTGATGCAGCTTTGAATCAAGCTCAACGAGAAGCTTTACAAAATACAAGAAAAAAAGATCAAAAGGCTCTCACCATCA
TTCATCAAGCCATTGATGATAACAATTTTGAGAAAATTTCTGGAGCAACTACTGCATATCAAGAATAG
Protein sequenceShow/hide protein sequence
MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFEKISGATTAYQE