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Cmc09g0243341 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0243341
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
Genome locationCMiso1.1chr09:5896801..5897226
RNA-Seq ExpressionCmc09g0243341
SyntenyCmc09g0243341
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058506.1 flocculation protein FLO11-like [Cucumis melo var. makuwa]6.1e-6293.23Show/hide
Query:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL
        MVANVCYTS LEPTTVSATL DE WILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVI NKAR VAQ YSQIEGLDFGETF PVARL
Subjt:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL

Query:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE
        EAIRLLLSYACF RFKLFQMDVKS FLNGYLSE
Subjt:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE

KAA0059225.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.0e-6191.73Show/hide
Query:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL
        MVANVCYTS LEPTTVSA LSDE WIL +QEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVI NKARLVAQ YSQIEGLDFGETF PVARL
Subjt:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL

Query:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE
        EAIRLLLSYACF RFKLFQMDVKS FLNGYL E
Subjt:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE

KAA0059939.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.3e-6090.23Show/hide
Query:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL
        MVANVCYTSSLEPT VSA LSDE WIL MQEELLQFERNQ+WELVPKPPYANIIGTKWIFKNKTDEEGRVI NKARLVAQ Y QIEGLDFGETF PVARL
Subjt:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL

Query:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE
        E IRLLLSYA F+RFKLFQMDVKS FLNGYLSE
Subjt:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE

TYK05806.1 gag-pol polyprotein [Cucumis melo var. makuwa]5.9e-73100Show/hide
Query:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL
        MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL
Subjt:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL

Query:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSEVNREALQS
        EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSEVNREALQS
Subjt:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSEVNREALQS

TYK07239.1 flocculation protein FLO11-like [Cucumis melo var. makuwa]6.1e-6293.23Show/hide
Query:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL
        MVANVCYTS LEPTTVSATL DE WILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVI NKAR VAQ YSQIEGLDFGETF PVARL
Subjt:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL

Query:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE
        EAIRLLLSYACF RFKLFQMDVKS FLNGYLSE
Subjt:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE

TrEMBL top hitse value%identityAlignment
A0A5A7UWF9 Flocculation protein FLO11-like3.0e-6293.23Show/hide
Query:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL
        MVANVCYTS LEPTTVSATL DE WILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVI NKAR VAQ YSQIEGLDFGETF PVARL
Subjt:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL

Query:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE
        EAIRLLLSYACF RFKLFQMDVKS FLNGYLSE
Subjt:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE

A0A5A7V046 Gag-pol polyprotein1.5e-6191.73Show/hide
Query:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL
        MVANVCYTS LEPTTVSA LSDE WIL +QEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVI NKARLVAQ YSQIEGLDFGETF PVARL
Subjt:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL

Query:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE
        EAIRLLLSYACF RFKLFQMDVKS FLNGYL E
Subjt:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE

A0A5A7V293 Gag-pol polyprotein1.6e-6090.23Show/hide
Query:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL
        MVANVCYTSSLEPT VSA LSDE WIL MQEELLQFERNQ+WELVPKPPYANIIGTKWIFKNKTDEEGRVI NKARLVAQ Y QIEGLDFGETF PVARL
Subjt:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL

Query:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE
        E IRLLLSYA F+RFKLFQMDVKS FLNGYLSE
Subjt:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE

A0A5D3C636 Gag-pol polyprotein2.8e-73100Show/hide
Query:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL
        MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL
Subjt:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL

Query:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSEVNREALQS
        EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSEVNREALQS
Subjt:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSEVNREALQS

A0A5D3CAA3 Flocculation protein FLO11-like3.0e-6293.23Show/hide
Query:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL
        MVANVCYTS LEPTTVSATL DE WILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVI NKAR VAQ YSQIEGLDFGETF PVARL
Subjt:  MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARL

Query:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE
        EAIRLLLSYACF RFKLFQMDVKS FLNGYLSE
Subjt:  EAIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.8e-1741.28Show/hide
Query:  WILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARLEAIRLLLSYACFQRFKLFQMDVKS
        W  A+  EL   + N  W +  +P   NI+ ++W+F  K +E G  I  KARLVA+ ++Q   +D+ ETF PVAR+ + R +LS       K+ QMDVK+
Subjt:  WILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARLEAIRLLLSYACFQRFKLFQMDVKS

Query:  TFLNGYLSE
         FLNG L E
Subjt:  TFLNGYLSE

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.9e-1636.36Show/hide
Query:  VCYTSSLEPTTVSATLS---DEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARLE
        V  +   EP ++   LS     Q + AMQEE+   ++N  ++LV  P     +  KW+FK K D + +++  KARLV + + Q +G+DF E F PV ++ 
Subjt:  VCYTSSLEPTTVSATLS---DEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARLE

Query:  AIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE
        +IR +LS A     ++ Q+DVK+ FL+G L E
Subjt:  AIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE

P92520 Uncharacterized mitochondrial protein AtMg008202.1e-1746.6Show/hide
Query:  TSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARLEAIRLLL
        T   EP +V   L D  W  AMQEEL    RN+ W LVP P   NI+G KW+FK K   +G +   KARLVA+ + Q EG+ F ET+ PV R   IR +L
Subjt:  TSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARLEAIRLLL

Query:  SYA
        + A
Subjt:  SYA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.0e-1940Show/hide
Query:  VCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPP-YANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARLEAI
        V   +  EP T    L DE+W  AM  E+     N  W+LVP PP +  I+G +WIF  K + +G +   KARLVA+ Y+Q  GLD+ ETF PV +  +I
Subjt:  VCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPP-YANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARLEAI

Query:  RLLLSYACFQRFKLFQMDVKSTFLNGYLSE
        R++L  A  + + + Q+DV + FL G L++
Subjt:  RLLLSYACFQRFKLFQMDVKSTFLNGYLSE

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE28.7e-1939.39Show/hide
Query:  YTSSL----EPTTVSATLSDEQWILAMQEELLQFERNQVWELV-PKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARLE
        Y +SL    EP T    + D++W  AM  E+     N  W+LV P PP   I+G +WIF  K + +G +   KARLVA+ Y+Q  GLD+ ETF PV +  
Subjt:  YTSSL----EPTTVSATLSDEQWILAMQEELLQFERNQVWELV-PKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARLE

Query:  AIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE
        +IR++L  A  + + + Q+DV + FL G L++
Subjt:  AIRLLLSYACFQRFKLFQMDVKSTFLNGYLSE

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.3e-2239.53Show/hide
Query:  VCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARLEAIR
        VC   + EP+T +       W  AM +E+   E    WE+   PP    IG KW++K K + +G +   KARLVA+ Y+Q EG+DF ETF PV +L +++
Subjt:  VCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARLEAIR

Query:  LLLSYACFQRFKLFQMDVKSTFLNGYLSE
        L+L+ +    F L Q+D+ + FLNG L E
Subjt:  LLLSYACFQRFKLFQMDVKSTFLNGYLSE

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)1.5e-1846.6Show/hide
Query:  TSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARLEAIRLLL
        T   EP +V   L D  W  AMQEEL    RN+ W LVP P   NI+G KW+FK K   +G +   KARLVA+ + Q EG+ F ET+ PV R   IR +L
Subjt:  TSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARLEAIRLLL

Query:  SYA
        + A
Subjt:  SYA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGCCAATGTGTGCTACACATCTTCACTAGAACCGACTACGGTCTCTGCAACACTTTCTGACGAACAATGGATCTTGGCTATGCAGGAAGAGCTACTCCAGTTTGA
AAGAAACCAAGTATGGGAATTAGTACCTAAGCCACCTTATGCTAACATAATTGGTACCAAATGGATCTTTAAGAACAAAACAGATGAAGAAGGTAGAGTTATCTGTAATA
AAGCTAGACTGGTTGCTCAAGAATACTCTCAAATAGAAGGTCTGGATTTTGGAGAAACATTTGTCCCAGTTGCCAGATTAGAAGCCATCCGACTACTGCTAAGCTATGCA
TGTTTCCAGAGGTTCAAACTATTCCAAATGGATGTAAAGAGCACGTTCCTAAATGGGTACTTGTCCGAGGTGAATAGAGAAGCTCTACAAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGCCAATGTGTGCTACACATCTTCACTAGAACCGACTACGGTCTCTGCAACACTTTCTGACGAACAATGGATCTTGGCTATGCAGGAAGAGCTACTCCAGTTTGA
AAGAAACCAAGTATGGGAATTAGTACCTAAGCCACCTTATGCTAACATAATTGGTACCAAATGGATCTTTAAGAACAAAACAGATGAAGAAGGTAGAGTTATCTGTAATA
AAGCTAGACTGGTTGCTCAAGAATACTCTCAAATAGAAGGTCTGGATTTTGGAGAAACATTTGTCCCAGTTGCCAGATTAGAAGCCATCCGACTACTGCTAAGCTATGCA
TGTTTCCAGAGGTTCAAACTATTCCAAATGGATGTAAAGAGCACGTTCCTAAATGGGTACTTGTCCGAGGTGAATAGAGAAGCTCTACAAAGTTGA
Protein sequenceShow/hide protein sequence
MVANVCYTSSLEPTTVSATLSDEQWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVICNKARLVAQEYSQIEGLDFGETFVPVARLEAIRLLLSYA
CFQRFKLFQMDVKSTFLNGYLSEVNREALQS