; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0243351 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0243351
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibonuclease H
Genome locationCMiso1.1chr09:5915119..5915844
RNA-Seq ExpressionCmc09g0243351
SyntenyCmc09g0243351
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033221.1 uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]1.2e-11089.73Show/hide
Query:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF
        MLIKIKE+VKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMC++YRDLNRAS KDNF LP+IDVLVDNT GFSTFSFMDGFSGYNQIKMA EDQEK TF
Subjt:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF

Query:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV
        ITLWG FCYKVMPFGLKNAGATYQ+AMVTLFHDLMHKEIEVYVDDMI KSRLEEKHVVTL K FERLRKFQLKLNP KC FGVSS KLLGFIVSREGIKV
Subjt:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV

Query:  DPEKIKAIVDLRPPKTQKEVRSFL
        DP+KIKAIVDLR PKTQKE++ +L
Subjt:  DPEKIKAIVDLRPPKTQKEVRSFL

TYK00092.1 protein NYNRIN-like [Cucumis melo var. makuwa]6.2e-12392.12Show/hide
Query:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF
        MLIKIKE+VKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMC++YRDLNRAS KDNF LP+IDVLVDNT GFSTFSFMDGFSGYNQIKMA EDQEK TF
Subjt:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF

Query:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV
        ITLWGTFCYKVMPFGLKNAGATYQ+AMVTLFHDLMHKEIEVYVDDMI KSRLEEKHVVTLCK FERLRKFQLKLNP KCIFGVSS KLLGFIVS EGIKV
Subjt:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV

Query:  DPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQTC
        D +KIKAIVDLRPPKT+KEVRSFLG LNYIARFISHLTQTC
Subjt:  DPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQTC

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]1.9e-10879.67Show/hide
Query:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF
        MLIK+K++V+KQ DAGFL V+ YP WVANIVPVPKK+G+VRMC++YRDLNRAS KDNF LP+IDVLVDNT GFSTFSFMDGFSGYN+IKMA ED+EK TF
Subjt:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF

Query:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV
        ITLWGTFCYKVM FGLKNAGATYQ+AMVTLFHDLMHKEIEVYVDDMI KSR  E+H + L K FERLRKFQLKLNP KC FGV+S KLLGF+V +EGIKV
Subjt:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV

Query:  DPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQTC
        DP+K+KAI+++ PPKT KEVR FLG LNYIARFISHLT TC
Subjt:  DPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQTC

XP_038680920.1 uncharacterized protein LOC119981848 [Tripterygium wilfordii]5.6e-10878.84Show/hide
Query:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF
        ML+KI+++VKKQFDAGFLAVA+YP WVANIVPVPKKDGKVRMC++YRDLNRAS KDNF LP+IDVLVDNT   STFSFMDGFSGYNQIKMA ED+EK TF
Subjt:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF

Query:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV
        ITLWGTFCYKVMPFGLKNAGATYQ+AMVTLFHD+MH+E+EVYVDDMI KS+ +E H+V L K F+RLRK QLKLNP KC FG +S KLLGFIVSR+GI+V
Subjt:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV

Query:  DPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQTC
        DP+K+KAI+++ PP+T+KEVR FLG LNYIARFIS LT TC
Subjt:  DPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQTC

XP_038685727.1 uncharacterized protein LOC119985509 [Tripterygium wilfordii]5.6e-10878.84Show/hide
Query:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF
        ML+KI+++VKKQFDAGFLAVA+YP WVANIVPVPKKDGKVRMC++YRDLNRAS KDNF LP+IDVLVDNT   STFSFMDGFSGYNQIKMA ED+EK TF
Subjt:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF

Query:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV
        ITLWGTFCYKVMPFGLKNAGATYQ+AMVTLFHD+MH+E+EVYVDDMI KS+ +E H+V L K F+RLRK QLKLNP KC FG +S KLLGFIVSR+GI+V
Subjt:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV

Query:  DPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQTC
        DP+K+KAI+++ PP+T+KEVR FLG LNYIARFIS LT TC
Subjt:  DPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQTC

TrEMBL top hitse value%identityAlignment
A0A1U8KKL7 Ribonuclease H1.8e-10780.08Show/hide
Query:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF
        ML+KIKE+VKKQFDAGFL  +KYP WVANIVPVPKKDGKVRMC++YRDLNRAS KDNF LP+ID LVDNT   S FSFMDGFSGYNQIKMA ED EK TF
Subjt:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF

Query:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV
        IT+WGTFCYKVMPFGLKNAGATYQ+AMVTLFHD+MHKEIEVYVDDMI KSR EE+HV+ L K FERLRKFQLKLNP KC FG +S KLLGFIVS  GI+V
Subjt:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV

Query:  DPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQTC
        DP+KIKAI +L PP+TQKEVR FLG LNYIARFI+ LT  C
Subjt:  DPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQTC

A0A1U8M5T5 Ribonuclease H1.8e-10780.08Show/hide
Query:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF
        ML+KIKE+VKKQFDAGFL  +KYP WVANIVPVPKKDGKVRMC++YRDLNRAS KDNF LP+ID LVDNT   S FSFMDGFSGYNQIKMA ED EK TF
Subjt:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF

Query:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV
        IT+WGTFCYKVMPFGLKNAGATYQ+AMVTLFHD+MHKEIEVYVDDMI KSR EE+HV+ L K FERLRKFQLKLNP KC FG +S KLLGFIVS  GI+V
Subjt:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV

Query:  DPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQTC
        DP+KIKAI +L PP+TQKEVR FLG LNYIARFI+ LT  C
Subjt:  DPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQTC

A0A5A7SUT0 Reverse transcriptase5.9e-11189.73Show/hide
Query:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF
        MLIKIKE+VKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMC++YRDLNRAS KDNF LP+IDVLVDNT GFSTFSFMDGFSGYNQIKMA EDQEK TF
Subjt:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF

Query:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV
        ITLWG FCYKVMPFGLKNAGATYQ+AMVTLFHDLMHKEIEVYVDDMI KSRLEEKHVVTL K FERLRKFQLKLNP KC FGVSS KLLGFIVSREGIKV
Subjt:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV

Query:  DPEKIKAIVDLRPPKTQKEVRSFL
        DP+KIKAIVDLR PKTQKE++ +L
Subjt:  DPEKIKAIVDLRPPKTQKEVRSFL

A0A5D3BMZ2 Protein NYNRIN-like3.0e-12392.12Show/hide
Query:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF
        MLIKIKE+VKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMC++YRDLNRAS KDNF LP+IDVLVDNT GFSTFSFMDGFSGYNQIKMA EDQEK TF
Subjt:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF

Query:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV
        ITLWGTFCYKVMPFGLKNAGATYQ+AMVTLFHDLMHKEIEVYVDDMI KSRLEEKHVVTLCK FERLRKFQLKLNP KCIFGVSS KLLGFIVS EGIKV
Subjt:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV

Query:  DPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQTC
        D +KIKAIVDLRPPKT+KEVRSFLG LNYIARFISHLTQTC
Subjt:  DPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQTC

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222319.4e-10979.67Show/hide
Query:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF
        MLIK+K++V+KQ DAGFL V+ YP WVANIVPVPKK+G+VRMC++YRDLNRAS KDNF LP+IDVLVDNT GFSTFSFMDGFSGYN+IKMA ED+EK TF
Subjt:  MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTF

Query:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV
        ITLWGTFCYKVM FGLKNAGATYQ+AMVTLFHDLMHKEIEVYVDDMI KSR  E+H + L K FERLRKFQLKLNP KC FGV+S KLLGF+V +EGIKV
Subjt:  ITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKV

Query:  DPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQTC
        DP+K+KAI+++ PPKT KEVR FLG LNYIARFISHLT TC
Subjt:  DPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQTC

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.69.9e-3137.96Show/hide
Query:  PIWVANIVPVPKKDG-----KVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTFITLWGTFCYKVMPFGLKN
        PIWV     VPKK       K R+ I+YR LN  +  D   +P +D ++      + F+ +D   G++QI+M  E   K  F T  G + Y  MPFGLKN
Subjt:  PIWVANIVPVPKKDG-----KVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTFITLWGTFCYKVMPFGLKN

Query:  AGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKVDPEKIKAIVDLRPPKTQK
        A AT+Q+ M  +   L++K   VY+DD+I  S   ++H+ +L   FE+L K  LKL   KC F       LG +++ +GIK +PEKI+AI     P   K
Subjt:  AGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKVDPEKIKAIVDLRPPKTQK

Query:  EVRSFLGWLNYIARFI
        E+++FLG   Y  +FI
Subjt:  EVRSFLGWLNYIARFI

P0CT41 Transposon Tf2-12 polyprotein6.4e-3029.79Show/hide
Query:  IKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTFITLW
        + +++ +   +G +  +K  I    ++ VPKK+G +RM ++Y+ LN+    + + LP I+ L+    G + F+ +D  S Y+ I++   D+ K+ F    
Subjt:  IKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTFITLW

Query:  GTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKVDPEK
        G F Y VMP+G+  A A +Q  + T+  +     +  Y+DD++  S+ E +HV  +    ++L+   L +N  KC F  S  K +G+ +S +G     E 
Subjt:  GTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKVDPEK

Query:  IKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQ
        I  ++  + PK +KE+R FLG +NY+ +FI   +Q
Subjt:  IKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQ

P20825 Retrovirus-related Pol polyprotein from transposon 2972.2e-3033.9Show/hide
Query:  IKIKEDVKKQFDAGFLAVA----KYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKM
        I+++  V++  + G +  +      P WV    P      K R+ I+YR LN  +  D + +P +D ++        F+ +D   G++QI+M  E   K 
Subjt:  IKIKEDVKKQFDAGFLAVA----KYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKM

Query:  TFITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGI
         F T  G + Y  MPFGL+NA AT+Q+ M  +   L++K   VY+DD+I  S    +H+ ++   F +L    LKL   KC F       LG IV+ +GI
Subjt:  TFITLWGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGI

Query:  KVDPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFI
        K +P K+KAIV    P   KE+R+FLG   Y  +FI
Subjt:  KVDPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFI

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein6.0e-3637.71Show/hide
Query:  KIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTFITL
        +I + V+K  D  F+  +K P   + +V VPKKDG  R+C++YR LN+A+  D F LP ID L+        F+ +D  SGY+QI M  +D+ K  F+T 
Subjt:  KIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTFITL

Query:  WGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKVDPE
         G + Y VMPFGL NA +T+ + M   F DL  + + VY+DD++  S   E+H   L    ERL+   L +   KC F     + LG+ +  + I     
Subjt:  WGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKVDPE

Query:  KIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQ
        K  AI D   PKT K+ + FLG +NY  RFI + ++
Subjt:  KIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQ

Q99315 Transposon Ty3-G Gag-Pol polyprotein6.0e-3637.71Show/hide
Query:  KIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTFITL
        +I + V+K  D  F+  +K P   + +V VPKKDG  R+C++YR LN+A+  D F LP ID L+        F+ +D  SGY+QI M  +D+ K  F+T 
Subjt:  KIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTFITL

Query:  WGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKVDPE
         G + Y VMPFGL NA +T+ + M   F DL  + + VY+DD++  S   E+H   L    ERL+   L +   KC F     + LG+ +  + I     
Subjt:  WGTFCYKVMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKVDPE

Query:  KIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQ
        K  AI D   PKT K+ + FLG +NY  RFI + ++
Subjt:  KIKAIVDLRPPKTQKEVRSFLGWLNYIARFISHLTQ

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.0e-0639.71Show/hide
Query:  QLKLNPTKCIFGVSSEKLLG--FIVSREGIKVDPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISH
        Q   N  KC FG      LG   I+S EG+  DP K++A+V    PK   E+R FLG   Y  RF+ +
Subjt:  QLKLNPTKCIFGVSSEKLLG--FIVSREGIKVDPEKIKAIVDLRPPKTQKEVRSFLGWLNYIARFISH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGATCAAGATCAAGGAGGATGTTAAAAAGCAATTTGATGCTGGATTCTTAGCAGTAGCAAAATACCCAATTTGGGTTGCAAATATTGTCCCAGTTCCAAAGAAGGA
CGGGAAGGTTAGAATGTGCATAAACTATAGAGATCTTAACCGAGCAAGTTCTAAAGACAACTTTTCTCTTCCTTACATCGACGTGTTGGTAGATAATACTACTGGGTTTT
CCACCTTCTCATTTATGGATGGATTTTCAGGATACAACCAGATCAAAATGGCTTTAGAAGATCAAGAAAAAATGACATTCATCACCTTGTGGGGAACGTTTTGCTATAAA
GTAATGCCTTTTGGGTTAAAAAATGCAGGAGCAACTTATCAGAAAGCGATGGTTACATTATTCCATGACTTGATGCATAAAGAAATTGAAGTTTATGTTGATGATATGAT
TACCAAGTCTAGACTTGAAGAAAAGCACGTGGTTACTCTTTGTAAGTTTTTTGAGCGATTACGAAAATTCCAATTAAAGTTGAATCCAACAAAATGCATATTTGGAGTTT
CTTCTGAGAAGTTATTAGGTTTCATTGTCAGTCGTGAAGGCATCAAGGTGGACCCAGAAAAAATCAAGGCGATAGTTGACTTAAGGCCACCAAAAACACAAAAGGAGGTT
AGAAGTTTTTTAGGATGGTTGAATTACATTGCACGATTTATTTCACACCTCACTCAAACATGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGATCAAGATCAAGGAGGATGTTAAAAAGCAATTTGATGCTGGATTCTTAGCAGTAGCAAAATACCCAATTTGGGTTGCAAATATTGTCCCAGTTCCAAAGAAGGA
CGGGAAGGTTAGAATGTGCATAAACTATAGAGATCTTAACCGAGCAAGTTCTAAAGACAACTTTTCTCTTCCTTACATCGACGTGTTGGTAGATAATACTACTGGGTTTT
CCACCTTCTCATTTATGGATGGATTTTCAGGATACAACCAGATCAAAATGGCTTTAGAAGATCAAGAAAAAATGACATTCATCACCTTGTGGGGAACGTTTTGCTATAAA
GTAATGCCTTTTGGGTTAAAAAATGCAGGAGCAACTTATCAGAAAGCGATGGTTACATTATTCCATGACTTGATGCATAAAGAAATTGAAGTTTATGTTGATGATATGAT
TACCAAGTCTAGACTTGAAGAAAAGCACGTGGTTACTCTTTGTAAGTTTTTTGAGCGATTACGAAAATTCCAATTAAAGTTGAATCCAACAAAATGCATATTTGGAGTTT
CTTCTGAGAAGTTATTAGGTTTCATTGTCAGTCGTGAAGGCATCAAGGTGGACCCAGAAAAAATCAAGGCGATAGTTGACTTAAGGCCACCAAAAACACAAAAGGAGGTT
AGAAGTTTTTTAGGATGGTTGAATTACATTGCACGATTTATTTCACACCTCACTCAAACATGTTAG
Protein sequenceShow/hide protein sequence
MLIKIKEDVKKQFDAGFLAVAKYPIWVANIVPVPKKDGKVRMCINYRDLNRASSKDNFSLPYIDVLVDNTTGFSTFSFMDGFSGYNQIKMALEDQEKMTFITLWGTFCYK
VMPFGLKNAGATYQKAMVTLFHDLMHKEIEVYVDDMITKSRLEEKHVVTLCKFFERLRKFQLKLNPTKCIFGVSSEKLLGFIVSREGIKVDPEKIKAIVDLRPPKTQKEV
RSFLGWLNYIARFISHLTQTC