; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0243561 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0243561
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCMiso1.1chr09:6194813..6195127
RNA-Seq ExpressionCmc09g0243561
SyntenyCmc09g0243561
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057703.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.8e-4084.31Show/hide
Query:  LDTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRD
        LDT+KSITGFCIFLEKSLVSWKTKKQA  S SS EA+YR L SVSSEITWLTHL QDLQIPHQ P LIYCDN   ISIASNPTFHERTKHIEID HFI D
Subjt:  LDTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRD

Query:  KI
        KI
Subjt:  KI
KAA0065481.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.1e-4389.22Show/hide
Query:  LDTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRD
        LDT+KSITGFCIFLEKSLVSWKTKKQA VS SSAEAEYRALASVSSEITWLTHL Q+ QIPHQ P LIYCDN  AISIASNPTFHERTKHIEIDCHFI D
Subjt:  LDTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRD

Query:  KI
        KI
Subjt:  KI
XP_016902992.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]4.8e-4084.31Show/hide
Query:  LDTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRD
        LDT+KSITGFCIFLEKSLVSWKTKKQA  S SS EA+YR L SVSSEITWLTHL QDLQIPHQ P LIYCDN   ISIASNPTFHERTKHIEID HFI D
Subjt:  LDTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRD

Query:  KI
        KI
Subjt:  KI
XP_022899321.1 uncharacterized protein LOC111412620 [Olea europaea var. sylvestris]2.0e-3369.61Show/hide
Query:  LDTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRD
        LDT+KS+ GFC+FL  SL+SWK KKQ  VS SSAEAEYRALAS +SE+TWLT L  D Q   + PT+I+CDN VA+ +ASNP FHERTKHIEIDCHFIRD
Subjt:  LDTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRD

Query:  KI
        K+
Subjt:  KI
XP_030497448.1 uncharacterized protein LOC115713102 [Cannabis sativa]5.2e-3473Show/hide
Query:  TQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRDKI
        T++S TGFCIFL   L+SWKTKKQA +S SSAEAEYRALA+  SEITWL +L QDL IP   PT I+CDN  AI IA+NPTFHERTKHIE+DCHFIRDKI
Subjt:  TQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRDKI
TrEMBL top hitse value%identityAlignment
A0A1S4E444 uncharacterized mitochondrial protein AtMg00810-like2.3e-4084.31Show/hide
Query:  LDTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRD
        LDT+KSITGFCIFLEKSLVSWKTKKQA  S SS EA+YR L SVSSEITWLTHL QDLQIPHQ P LIYCDN   ISIASNPTFHERTKHIEID HFI D
Subjt:  LDTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRD

Query:  KI
        KI
Subjt:  KI
A0A438HDI8 Retrovirus-related Pol polyprotein from transposon TNT 1-946.2e-3367.33Show/hide
Query:  DTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRDK
        D++KS+TGFCIFL  SL+SWK+KKQ  VS SSAEAEYRA+A V+ E+TWL  L +DL IPH  P L+YCDN  A+ IA+NP FHERTKHIEIDCH +R+K
Subjt:  DTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRDK

Query:  I
        I
Subjt:  I
A0A5D3CBP3 Putative mitochondrial protein1.0e-4389.22Show/hide
Query:  LDTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRD
        LDT+KSITGFCIFLEKSLVSWKTKKQA VS SSAEAEYRALASVSSEITWLTHL Q+ QIPHQ P LIYCDN  AISIASNPTFHERTKHIEIDCHFI D
Subjt:  LDTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRD

Query:  KI
        KI
Subjt:  KI
A0A5D3DVP4 Putative mitochondrial protein2.3e-4084.31Show/hide
Query:  LDTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRD
        LDT+KSITGFCIFLEKSLVSWKTKKQA  S SS EA+YR L SVSSEITWLTHL QDLQIPHQ P LIYCDN   ISIASNPTFHERTKHIEID HFI D
Subjt:  LDTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRD

Query:  KI
        KI
Subjt:  KI
A0A803NGJ9 Uncharacterized protein7.3e-3472Show/hide
Query:  TQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRDKI
        T++S TGFCIFL  SL+SWKTKKQ  +S SSAEAEYRALA+  SEITWL +L QD QIP   P  I+CDN  AI IA+NPTFHERTKHIE+DCHFIRDKI
Subjt:  TQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRDKI
SwissProt top hitse value%identityAlignment
P04146 Copia protein9.5e-1543Show/hide
Query:  QKSITGFCI-FLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRDKI
        +KS TG+     + +L+ W TK+Q +V+ SS EAEY AL     E  WL  L   + I  + P  IY DN   ISIA+NP+ H+R KHI+I  HF R+++
Subjt:  QKSITGFCI-FLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRDKI
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.3e-1537.25Show/hide
Query:  LDTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRD
        +D +KS TG+        +SW++K Q  V+ S+ EAEY A      E+ WL    Q+L + HQ   ++YCD+  AI ++ N  +H RTKHI++  H+IR+
Subjt:  LDTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRD

Query:  KI
         +
Subjt:  KI
P92519 Uncharacterized mitochondrial protein AtMg008103.9e-0854.17Show/hide
Query:  TQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITW
        T++S TGFC FL  +++SW  K+Q  VS SS E EYRALA  ++E+TW
Subjt:  TQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITW
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.4e-1945.54Show/hide
Query:  DTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRDK
        D   S  G+ ++L    +SW +KKQ  V  SS EAEYR++A+ SSE+ W+  L  +L I    P +IYCDN  A  + +NP FH R KHI ID HFIR++
Subjt:  DTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRDK

Query:  I
        +
Subjt:  I
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE26.4e-1944.55Show/hide
Query:  DTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRDK
        D   S  G+ ++L    +SW +KKQ  V  SS EAEYR++A+ SSE+ W+  L  +L I    P +IYCDN  A  + +NP FH R KHI +D HFIR++
Subjt:  DTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRDK

Query:  I
        +
Subjt:  I
Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.4e-2957Show/hide
Query:  DTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRDK
        DT++S  G+C+FL  SL+SWK+KKQ  VS SSAEAEYRAL+  + E+ WL    ++LQ+P   PTL++CDN  AI IA+N  FHERTKHIE DCH +R++
Subjt:  DTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRDK
ATMG00810.1 DNA/RNA polymerases superfamily protein2.8e-0954.17Show/hide
Query:  TQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITW
        T++S TGFC FL  +++SW  K+Q  VS SS E EYRALA  ++E+TW
Subjt:  TQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTTAGACACTCAAAAATCAATCACTGGCTTTTGCATCTTTCTTGAAAAATCCCTTGTATCATGGAAAACTAAAAAGCAAGCCGCGGTTTCACACTCATCAGCAGA
GGCAGAATACAGAGCTTTAGCAAGTGTATCAAGTGAGATTACATGGCTGACTCACCTCCCTCAAGACTTGCAAATTCCTCATCAAGCTCCAACCTTAATATATTGTGATA
ACCATGTGGCCATTTCCATCGCTTCTAATCCAACATTCCATGAGCGTACTAAACACATTGAAATAGACTGCCACTTCATACGTGATAAAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTTAGACACTCAAAAATCAATCACTGGCTTTTGCATCTTTCTTGAAAAATCCCTTGTATCATGGAAAACTAAAAAGCAAGCCGCGGTTTCACACTCATCAGCAGA
GGCAGAATACAGAGCTTTAGCAAGTGTATCAAGTGAGATTACATGGCTGACTCACCTCCCTCAAGACTTGCAAATTCCTCATCAAGCTCCAACCTTAATATATTGTGATA
ACCATGTGGCCATTTCCATCGCTTCTAATCCAACATTCCATGAGCGTACTAAACACATTGAAATAGACTGCCACTTCATACGTGATAAAATTTAA
Protein sequenceShow/hide protein sequence
MFLDTQKSITGFCIFLEKSLVSWKTKKQAAVSHSSAEAEYRALASVSSEITWLTHLPQDLQIPHQAPTLIYCDNHVAISIASNPTFHERTKHIEIDCHFIRDKI