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Cmc09g0243571 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0243571
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr09:6197564..6197869
RNA-Seq ExpressionCmc09g0243571
SyntenyCmc09g0243571
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035728.1 rhodanese-like domain-containing protein 6 isoform X2 [Cucumis melo var. makuwa]1.2e-2467.03Show/hide
Query:  YHADGTVD-KHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQQAKVS
        Y  DGTVD ++K RLVAKGY QQEGI+FL+TFS V KI TVKV L+L AS+ WSL QMD+NNAFLNGDLFEEV+M+LPLGY + +   K +
Subjt:  YHADGTVD-KHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQQAKVS

KAA0043630.1 Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]3.6e-2466.67Show/hide
Query:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKE
        Y   GTVD++K RL+AKGY+QQEGI+F +TFSLV KI TVK+ L+L AS+ WS  QMD+NNAFLNGDLFEEV M+LPLGY + +
Subjt:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKE

KAA0063422.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.5e-3385.06Show/hide
Query:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQQA
        YHADGTVDK+K RLV KGY QQE I+FL+TFS V KI TVKVLLSLTASFGWSLCQMDVNNAFLN DLFEEVYMTLP+ YYSKEQQA
Subjt:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQQA

XP_008463248.1 PREDICTED: uncharacterized protein LOC103501452 [Cucumis melo]1.6e-3587.36Show/hide
Query:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQQA
        YHADGT+DKHK  LVAKGYSQQEGI+FL+TFS V KI TVKVLLSLT SFGWSLCQMDVNN FLNGDLFEEVYMTLP+GYYSKEQQA
Subjt:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQQA

XP_016901937.1 PREDICTED: uncharacterized mitochondrial protein AtMg00820-like [Cucumis melo]9.5e-2564.71Show/hide
Query:  DGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQQAK
        DGT+D++K RLVAKGY+QQEGI+FL+TFSLV KI TVK+ L+L  S+ WS  QMD+NN FLNG+LFEEV+M+LPLGY + +   K
Subjt:  DGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQQAK

TrEMBL top hitse value%identityAlignment
A0A1S3CJ63 uncharacterized protein LOC1035014527.6e-3687.36Show/hide
Query:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQQA
        YHADGT+DKHK  LVAKGYSQQEGI+FL+TFS V KI TVKVLLSLT SFGWSLCQMDVNN FLNGDLFEEVYMTLP+GYYSKEQQA
Subjt:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQQA

A0A1S4E133 uncharacterized mitochondrial protein AtMg00820-like4.6e-2564.71Show/hide
Query:  DGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQQAK
        DGT+D++K RLVAKGY+QQEGI+FL+TFSLV KI TVK+ L+L  S+ WS  QMD+NN FLNG+LFEEV+M+LPLGY + +   K
Subjt:  DGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQQAK

A0A5A7SYT6 Rhodanese-like domain-containing protein 6 isoform X26.0e-2567.03Show/hide
Query:  YHADGTVD-KHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQQAKVS
        Y  DGTVD ++K RLVAKGY QQEGI+FL+TFS V KI TVKV L+L AS+ WSL QMD+NNAFLNGDLFEEV+M+LPLGY + +   K +
Subjt:  YHADGTVD-KHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQQAKVS

A0A5A7TK43 Reverse transcriptase, RNA-dependent DNA polymerase1.7e-2466.67Show/hide
Query:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKE
        Y   GTVD++K RL+AKGY+QQEGI+F +TFSLV KI TVK+ L+L AS+ WS  QMD+NNAFLNGDLFEEV M+LPLGY + +
Subjt:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKE

A0A5A7V587 Retrovirus-related Pol polyprotein from transposon TNT 1-947.1e-3485.06Show/hide
Query:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQQA
        YHADGTVDK+K RLV KGY QQE I+FL+TFS V KI TVKVLLSLTASFGWSLCQMDVNNAFLN DLFEEVYMTLP+ YYSKEQQA
Subjt:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQQA

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.6e-1143.04Show/hide
Query:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLG
        Y+  G   ++K RLVA+G++Q+  I++  TF+ V +I++ + +LSL   +   + QMDV  AFLNG L EE+YM LP G
Subjt:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLG

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-949.6e-1247.22Show/hide
Query:  KHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGY
        ++K RLV KG+ Q++GI+F   FS V K+ +++ +LSL AS    + Q+DV  AFL+GDL EE+YM  P G+
Subjt:  KHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGY

P92520 Uncharacterized mitochondrial protein AtMg008201.2e-0651.11Show/hide
Query:  HADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSL
        H+DGT+D+ K RLVAKG+ Q+EGI F+ T+S V + AT++ +L++
Subjt:  HADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSL

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.7e-1642.35Show/hide
Query:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQ
        Y++DG+++++K RLVAKGY+Q+ G+++  TFS V K  +++++L +     W + Q+DVNNAFL G L ++VYM+ P G+  K++
Subjt:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQ

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.2e-1642.35Show/hide
Query:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQ
        +++DG+++++K RLVAKGY+Q+ G+++  TFS V K  +++++L +     W + Q+DVNNAFL G L +EVYM+ P G+  K++
Subjt:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQ

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.5e-2354.76Show/hide
Query:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKE
        Y++DGT++++K RLVAKGY+QQEGI+F+ TFS V K+ +VK++L+++A + ++L Q+D++NAFLNGDL EE+YM LP GY +++
Subjt:  YHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKE

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)8.6e-0851.11Show/hide
Query:  HADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSL
        H+DGT+D+ K RLVAKG+ Q+EGI F+ T+S V + AT++ +L++
Subjt:  HADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTACCATGCTGATGGCACCGTTGATAAGCATAAAGTCCGACTGGTTGCAAAAGGTTATAGTCAACAAGAAGGCATTAACTTCCTCAACACCTTCTCCCTTGTGCC
TAAAATTGCCACTGTCAAAGTACTTCTATCACTAACAGCCTCCTTTGGCTGGTCCCTATGCCAAATGGATGTGAATAATGCATTCCTTAATGGCGACTTATTTGAAGAAG
TATACATGACATTACCACTGGGCTATTATTCCAAAGAGCAACAAGCTAAAGTAAGCATTTTGATAATGGTTCTCAAAATTTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCATTACCATGCTGATGGCACCGTTGATAAGCATAAAGTCCGACTGGTTGCAAAAGGTTATAGTCAACAAGAAGGCATTAACTTCCTCAACACCTTCTCCCTTGTGCC
TAAAATTGCCACTGTCAAAGTACTTCTATCACTAACAGCCTCCTTTGGCTGGTCCCTATGCCAAATGGATGTGAATAATGCATTCCTTAATGGCGACTTATTTGAAGAAG
TATACATGACATTACCACTGGGCTATTATTCCAAAGAGCAACAAGCTAAAGTAAGCATTTTGATAATGGTTCTCAAAATTTTATGA
Protein sequenceShow/hide protein sequence
MHYHADGTVDKHKVRLVAKGYSQQEGINFLNTFSLVPKIATVKVLLSLTASFGWSLCQMDVNNAFLNGDLFEEVYMTLPLGYYSKEQQAKVSILIMVLKIL