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Cmc09g0244001 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0244001
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr09:6649002..6649262
RNA-Seq ExpressionCmc09g0244001
SyntenyCmc09g0244001
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050251.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.7e-3589.53Show/hide
Query:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAANQ
        MNDELQALEKTHTWDYVDLPPGKRPI  KWIYKIKTH DGTIERYKA LVAK Y QEYGIDYEETFAP+ARMTSVRSLLAV AA Q
Subjt:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAANQ

KAA0050767.1 retrotransposon protein [Cucumis melo var. makuwa]6.0e-3689.53Show/hide
Query:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAANQ
        MNDELQALEKTHTWDYVDLPPGKRPI+ KWIYKIKTH+D TIERYKA LVAK Y QEYGIDYEETFAP+ARMTSVRSLLAVVAA Q
Subjt:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAANQ

KAA0064888.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.7e-3589.53Show/hide
Query:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAANQ
        MNDELQALEKTHTWDYVDLPPGKRPI  KWIYKIKTH DGTIERYKA LVAK Y QEYGIDYEETFAP+ARMTSVRSLLAV AA Q
Subjt:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAANQ

TYJ98155.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.7e-3589.53Show/hide
Query:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAANQ
        MNDELQALEKTHTWDYVDLPPGKRPI  KWIYKIKTH DGTIERYKA LVAK Y QEYGIDYEETFAP+ARMTSVRSLLAV AA Q
Subjt:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAANQ

TYK05717.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.1e-37100Show/hide
Query:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTS
        MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTS
Subjt:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTS

TrEMBL top hitse value%identityAlignment
A0A5A7U8Q0 Retrotransposon protein2.9e-3689.53Show/hide
Query:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAANQ
        MNDELQALEKTHTWDYVDLPPGKRPI+ KWIYKIKTH+D TIERYKA LVAK Y QEYGIDYEETFAP+ARMTSVRSLLAVVAA Q
Subjt:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAANQ

A0A5A7VBA1 Retrovirus-related Pol polyprotein from transposon TNT 1-948.4e-3689.53Show/hide
Query:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAANQ
        MNDELQALEKTHTWDYVDLPPGKRPI  KWIYKIKTH DGTIERYKA LVAK Y QEYGIDYEETFAP+ARMTSVRSLLAV AA Q
Subjt:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAANQ

A0A5D3BI36 Retrovirus-related Pol polyprotein from transposon TNT 1-948.4e-3689.53Show/hide
Query:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAANQ
        MNDELQALEKTHTWDYVDLPPGKRPI  KWIYKIKTH DGTIERYKA LVAK Y QEYGIDYEETFAP+ARMTSVRSLLAV AA Q
Subjt:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAANQ

A0A5D3BQV0 Retrovirus-related Pol polyprotein from transposon TNT 1-948.4e-3689.53Show/hide
Query:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAANQ
        MNDELQALEKTHTWDYVDLPPGKRPI YKWIYKIKTH DGTIERYKA LV K Y QEYGIDYEETFAPMA MTSVRSLL VVAA Q
Subjt:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAANQ

A0A5D3C1M1 Putative mitochondrial protein3.4e-37100Show/hide
Query:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTS
        MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTS
Subjt:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTS

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.8e-1242.68Show/hide
Query:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVV
        +N EL A +  +TW     P  K  +  +W++ +K +  G   RYKA LVA+ + Q+Y IDYEETFAP+AR++S R +L++V
Subjt:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVV

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-1644.05Show/hide
Query:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAA
        M +E+++L+K  T+  V+LP GKRP+  KW++K+K   D  + RYKA LV K + Q+ GID++E F+P+ +MTS+R++L++ A+
Subjt:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAA

P92520 Uncharacterized mitochondrial protein AtMg008201.1e-1343.21Show/hide
Query:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAV
        M +EL AL +  TW  V  P  +  +  KW++K K H DGT++R KA LVAK + QE GI + ET++P+ R  ++R++L V
Subjt:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE15.7e-1346.34Show/hide
Query:  MNDELQALEKTHTWDYVDLPPGKRPI-AYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAV
        M  E+ A    HTWD V  PP    I   +WI+  K + DG++ RYKA LVAK Y Q  G+DY ETF+P+ + TS+R +L V
Subjt:  MNDELQALEKTHTWDYVDLPPGKRPI-AYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE27.4e-1346.34Show/hide
Query:  MNDELQALEKTHTWDYVDLPPGKRPI-AYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAV
        M  E+ A    HTWD V  PP    I   +WI+  K + DG++ RYKA LVAK Y Q  G+DY ETF+P+ + TS+R +L V
Subjt:  MNDELQALEKTHTWDYVDLPPGKRPI-AYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAV

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.9e-2459.04Show/hide
Query:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVA
        M+DE+ A+E THTW+   LPP K+PI  KW+YKIK + DGTIERYKA LVAK Y Q+ GID+ ETF+P+ ++TSV+ +LA+ A
Subjt:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVA

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)8.1e-1543.21Show/hide
Query:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAV
        M +EL AL +  TW  V  P  +  +  KW++K K H DGT++R KA LVAK + QE GI + ET++P+ R  ++R++L V
Subjt:  MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGATGAATTACAGGCTCTTGAAAAGACGCACACTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACCCATTGCCTACAAGTGGATCTACAAAATCAAGACTCA
CTTTGATGGTACTATTGAGCGTTATAAGGCTTGTCTTGTAGCAAAAGAGTATTTCCAAGAATATGGTATTGACTATGAAGAAACATTTGCTCCTATGGCTCGGATGACGT
CTGTTCGCAGTTTATTAGCTGTTGTTGCTGCCAATCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGATGAATTACAGGCTCTTGAAAAGACGCACACTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACCCATTGCCTACAAGTGGATCTACAAAATCAAGACTCA
CTTTGATGGTACTATTGAGCGTTATAAGGCTTGTCTTGTAGCAAAAGAGTATTTCCAAGAATATGGTATTGACTATGAAGAAACATTTGCTCCTATGGCTCGGATGACGT
CTGTTCGCAGTTTATTAGCTGTTGTTGCTGCCAATCAGTGA
Protein sequenceShow/hide protein sequence
MNDELQALEKTHTWDYVDLPPGKRPIAYKWIYKIKTHFDGTIERYKACLVAKEYFQEYGIDYEETFAPMARMTSVRSLLAVVAANQ