; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0244051 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0244051
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr09:6696948..6697769
RNA-Seq ExpressionCmc09g0244051
SyntenyCmc09g0244051
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAD6453934.1 hypothetical protein E3N88_08640 [Mikania micrantha]2.4e-10769.23Show/hide
Query:  MWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVK
        +WKEAIKSE+DS++ NHTW+L DLP GNKPI  KWIFK+K +P+G++++YKARLV+ G+TQK G+DYFDTYSPVTKITTIR+LI++AAI+ LLIHQMDVK
Subjt:  MWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVK

Query:  TAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDT
        TAFLNGDL+EEIYM QPEGF +SG E+KVCKLRKSLYGLKQAPKKWYEKF+ TL  +G+ +N+SD+CVYSK      +LICLYVDDMLIFG ++  I  T
Subjt:  TAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDT

Query:  KLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS
        K FLSS FEMKDLG+ADVILGVKI++    +SLCQSHY+E++LKKFD F+++ V+TP+D S  LKKN  +SVS
Subjt:  KLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS

KAE8670806.1 hypothetical protein F3Y22_tig00112079pilonHSYRG00011 [Hibiscus syriacus]1.4e-10266.18Show/hide
Query:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKT
        WK A+  EL+S++ NHTW+LVDLP G KPI  KW+F++K +P+GSI+RYKARLVV G+TQ+ G+DYFDTYSPVTKI+TIRAL ALA+IH L +HQMDVKT
Subjt:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKT

Query:  AFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDTK
        AFLNGDL+EEIYM QP GF+  G E KV +L+KSLYGLKQAPK+WYEKF+ T+++ GF +N SD CVYSK+F  +C++I LYVDDMLIF +NIE I   K
Subjt:  AFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDTK

Query:  LFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS
         FLS+ FEM  LG+ DVILGV++ K +   SLCQ+HY++K+LKKFDSFDV  VRTP+D S HL KNKG SVS
Subjt:  LFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS

KAG7551885.1 Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa]2.4e-10265.07Show/hide
Query:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKT
        WKEA+ +E DS++ NHTW++VDLP G K IRCKWI K+K K +GSI+++KARLV  G+ QKQG+DYFDTY+PVTKI +IR L+A+A+ H L++HQMDVKT
Subjt:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKT

Query:  AFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDTK
        AFLNGDL EEIYM QPEGF I GQENKVCKL KSLYGLKQAPK+W+EKF+NTL+ NGF  N  DTCV+SKV     ++ICLYVDDMLI GT++E++ DTK
Subjt:  AFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDTK

Query:  LFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS
        +FLSS F+MKDLG+ADVILG+K+ K  +  SL QSHY+EKILKKF  +D    ++P+D+S HL +N+G+SV+
Subjt:  LFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS

KAG7592238.1 Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa]2.4e-10265.07Show/hide
Query:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKT
        WKEA+ +E DS++ NHTW++VDLP G K IRCKWI K+K K +GSI+++KARLV  G+ QKQG+DYFDTY+PVTKI +IR L+A+A+ H L++HQMDVKT
Subjt:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKT

Query:  AFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDTK
        AFLNGDL EEIYM QPEGF I GQENKVCKL KSLYGLKQAPK+W+EKF+NTL+ NGF  N  DTCV+SKV     ++ICLYVDDMLI GT++E++ DTK
Subjt:  AFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDTK

Query:  LFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS
        +FLSS F+MKDLG+ADVILG+K+ K  +  SL QSHY+EKILKKF  +D    ++P+D+S HL +N+G+SV+
Subjt:  LFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS

TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]7.0e-14794.87Show/hide
Query:  MWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVK
        MWKEAIKSELDSL MNHTW+LVDLPMGNKPIRCKWIFKRKTKPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVK
Subjt:  MWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVK

Query:  TAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDT
        TAFLNG+LEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPK+WYEKFNNTLI NGFKINSSDTCVYSK+ GADCILICLYVDDMLIFGTN+ELITDT
Subjt:  TAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDT

Query:  KLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS
        K FLSSHFEMKDLG+ADVILGVKIRKNKTS+SLCQSHYVEKILKKFDSFDVS VRTPFDASKHLKKNKGDSVS
Subjt:  KLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS

TrEMBL top hitse value%identityAlignment
A0A2N9EQT1 Integrase catalytic domain-containing protein2.2e-10667.28Show/hide
Query:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKT
        WK+AI SEL+S++ NHTW+LV+LP G K I  KW+FK+K K +GSIE++KARLV  GYTQK+GIDYFDTYSPVT++TTIR L+A+A+I+ L+IHQMDVKT
Subjt:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKT

Query:  AFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDTK
        AFLNGDL+EEIYM QPEGF + GQENKVCKLRKSLYGLKQAPK+W+EKF+ TL++NGF +N SD CVYSK  GA  ++ICLYVDDMLIFGT++  + +TK
Subjt:  AFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDTK

Query:  LFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS
         FLSS+F+MKDLG+AD+ILG++I +N   ++L QSHY+EK+LKKF+ +D   VRTP+D S HLKKN G  VS
Subjt:  LFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS

A0A2N9H4B0 Uncharacterized protein2.2e-10667.28Show/hide
Query:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKT
        WK+AI SEL+S++ NHTW+LV+LP G K I  KW+FK+K K +GSIE++KARLV  GYTQK+GIDYFDTYSPVT++TTIR L+A+A+I+ L+IHQMDVKT
Subjt:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKT

Query:  AFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDTK
        AFLNGDL+EEIYM QPEGF + GQENKVCKLRKSLYGLKQAPK+W+EKF+ TL++NGF +N SD CVYSK  GA  ++ICLYVDDMLIFGT++  + +TK
Subjt:  AFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDTK

Query:  LFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS
         FLSS+F+MKDLG+AD+ILG++I +N   ++L QSHY+EK+LKKF+ +D   VRTP+D S HLKKN G  VS
Subjt:  LFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS

A0A5D3C5T2 Ty1-copia retrotransposon protein3.4e-14794.87Show/hide
Query:  MWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVK
        MWKEAIKSELDSL MNHTW+LVDLPMGNKPIRCKWIFKRKTKPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVK
Subjt:  MWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVK

Query:  TAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDT
        TAFLNG+LEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPK+WYEKFNNTLI NGFKINSSDTCVYSK+ GADCILICLYVDDMLIFGTN+ELITDT
Subjt:  TAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDT

Query:  KLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS
        K FLSSHFEMKDLG+ADVILGVKIRKNKTS+SLCQSHYVEKILKKFDSFDVS VRTPFDASKHLKKNKGDSVS
Subjt:  KLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS

A0A5N6PGV2 Reverse transcriptase Ty1/copia-type domain-containing protein1.2e-10769.23Show/hide
Query:  MWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVK
        +WKEAIKSE+DS++ NHTW+L DLP GNKPI  KWIFK+K +P+G++++YKARLV+ G+TQK G+DYFDTYSPVTKITTIR+LI++AAI+ LLIHQMDVK
Subjt:  MWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVK

Query:  TAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDT
        TAFLNGDL+EEIYM QPEGF +SG E+KVCKLRKSLYGLKQAPKKWYEKF+ TL  +G+ +N+SD+CVYSK      +LICLYVDDMLIFG ++  I  T
Subjt:  TAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDT

Query:  KLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS
        K FLSS FEMKDLG+ADVILGVKI++    +SLCQSHY+E++LKKFD F+++ V+TP+D S  LKKN  +SVS
Subjt:  KLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS

A0A6A2Y4J7 Uncharacterized protein6.7e-10366.18Show/hide
Query:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKT
        WK A+  EL+S++ NHTW+LVDLP G KPI  KW+F++K +P+GSI+RYKARLVV G+TQ+ G+DYFDTYSPVTKI+TIRAL ALA+IH L +HQMDVKT
Subjt:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKT

Query:  AFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDTK
        AFLNGDL+EEIYM QP GF+  G E KV +L+KSLYGLKQAPK+WYEKF+ T+++ GF +N SD CVYSK+F  +C++I LYVDDMLIF +NIE I   K
Subjt:  AFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDTK

Query:  LFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS
         FLS+ FEM  LG+ DVILGV++ K +   SLCQ+HY++K+LKKFDSFDV  VRTP+D S HL KNKG SVS
Subjt:  LFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS

SwissProt top hitse value%identityAlignment
P04146 Copia protein4.8e-5041.47Show/hide
Query:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKT
        W+EAI +EL++  +N+TW +   P     +  +W+F  K    G+  RYKARLV  G+TQK  IDY +T++PV +I++ R +++L   +NL +HQMDVKT
Subjt:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKT

Query:  AFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFG--ADCILICLYVDDMLIFGTNIELITD
        AFLNG L+EEIYM  P+G  IS   + VCKL K++YGLKQA + W+E F   L    F  +S D C+Y    G   + I + LYVDD++I   ++  + +
Subjt:  AFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFG--ADCILICLYVDDMLIFGTNIELITD

Query:  TKLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTP
         K +L   F M DL +    +G++I   +  + L QS YV+KIL KF+  + + V TP
Subjt:  TKLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTP

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.4e-6749.63Show/hide
Query:  EAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAF
        +A++ E++SL  N T+ LV+LP G +P++CKW+FK K   +  + RYKARLVV G+ QK+GID+ + +SPV K+T+IR +++LAA  +L + Q+DVKTAF
Subjt:  EAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAF

Query:  LNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGA-DCILICLYVDDMLIFGTNIELITDTKL
        L+GDLEEEIYM QPEGF+++G+++ VCKL KSLYGLKQAP++WY KF++ + +  +    SD CVY K F   + I++ LYVDDMLI G +  LI   K 
Subjt:  LNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGA-DCILICLYVDDMLIFGTNIELITDTKL

Query:  FLSSHFEMKDLGDADVILGVKIRKNKTS--MSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNK
         LS  F+MKDLG A  ILG+KI + +TS  + L Q  Y+E++L++F+  +   V TP   + HLK +K
Subjt:  FLSSHFEMKDLGDADVILGVKIRKNKTS--MSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNK

P25600 Putative transposon Ty5-1 protein YCL074W2.0e-1935.5Show/hide
Query:  MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIEL
        MDV TAFLN  ++E IY+ QP GF      + V +L   +YGLKQAP  W E  NNTL   GF  +  +  +Y +      I I +YVDD+L+   + ++
Subjt:  MDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIEL

Query:  ITDTKLFLSSHFEMKDLGDADVILGVKIRKNKT-SMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHL
            K  L+  + MKDLG  D  LG+ I ++    ++L    Y+ K   + +     L +TP   SK L
Subjt:  ITDTKLFLSSHFEMKDLGDADVILGVKIRKNKT-SMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHL

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE14.7e-5339.93Show/hide
Query:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPI-RCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVK
        W+ A+ SE+++ + NHTWDLV  P  +  I  C+WIF +K   +GS+ RYKARLV  GY Q+ G+DY +T+SPV K T+IR ++ +A   +  I Q+DV 
Subjt:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPI-RCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVK

Query:  TAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDT
         AFL G L +++YM+QP GF    + N VCKLRK+LYGLKQAP+ WY +  N L+  GF  + SDT ++    G   + + +YVDD+LI G +  L+ +T
Subjt:  TAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDT

Query:  KLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS
           LS  F +KD  +    LG++ ++  T + L Q  Y+  +L + +      V TP   S  L    G  ++
Subjt:  KLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.3e-5139.41Show/hide
Query:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPI-RCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVK
        W++A+ SE+++ + NHTWDLV  P  +  I  C+WIF +K   +GS+ RYKARLV  GY Q+ G+DY +T+SPV K T+IR ++ +A   +  I Q+DV 
Subjt:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPI-RCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVK

Query:  TAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDT
         AFL G L +E+YM+QP GF    + + VC+LRK++YGLKQAP+ WY +    L+  GF  + SDT ++    G   I + +YVDD+LI G +  L+  T
Subjt:  TAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDT

Query:  KLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKG
           LS  F +K+  D    LG++ ++    + L Q  Y   +L + +      V TP   S  L  + G
Subjt:  KLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKG

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 84.9e-5839.56Show/hide
Query:  MWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVK
        +W  A+  E+ ++   HTW++  LP   KPI CKW++K K   +G+IERYKARLV  GYTQ++GID+ +T+SPV K+T+++ ++A++AI+N  +HQ+D+ 
Subjt:  MWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVK

Query:  TAFLNGDLEEEIYMTQPEGFKI----SGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIEL
         AFLNGDL+EEIYM  P G+      S   N VC L+KS+YGLKQA ++W+ KF+ TLI  GF  + SD   + K+     + + +YVDD++I   N   
Subjt:  TAFLNGDLEEEIYMTQPEGFKI----SGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIEL

Query:  ITDTKLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKG
        + + K  L S F+++DLG     LG++I ++   +++CQ  Y   +L +           P D S     + G
Subjt:  ITDTKLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKG

ATMG00810.1 DNA/RNA polymerases superfamily protein1.4e-0737.18Show/hide
Query:  ICLYVDDMLIFGTNIELITDTKLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTP
        + LYVDD+L+ G++  L+      LSS F MKDLG     LG++I+ + + + L Q+ Y E+IL      D   + TP
Subjt:  ICLYVDDMLIFGTNIELITDTKLFLSSHFEMKDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTP

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)1.9e-1744.19Show/hide
Query:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALA
        W +A++ ELD+L  N TW LV  P+    + CKW+FK K   +G+++R KARLV  G+ Q++GI + +TYSPV +  TIR ++ +A
Subjt:  WKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAAAGAGGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATCATACATGGGACCTAGTAGACCTTCCTATGGGAAACAAACCAATTAGGTGTAAGTGG
ATCTTCAAAAGAAAAACAAAACCAAATGGATCAATAGAAAGATACAAGGCTAGATTAGTGGTAGTAGGGTATACCCAGAAACAAGGCATTGATTATTTTGACACA
TACTCCCCTGTAACCAAGATAACCACAATTAGGGCCTTGATTGCATTAGCCGCAATACATAACCTTCTTATTCACCAAATGGACGTAAAAACTGCTTTTTTAAAT
GGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGTTTTAAAATTTCTGGGCAAGAAAACAAAGTGTGTAAACTGAGAAAATCCCTATACGGTCTCAAG
CAAGCTCCCAAGAAGTGGTATGAAAAGTTTAATAATACGTTAATAAACAATGGATTTAAAATAAATTCCTCAGACACGTGTGTTTATTCAAAGGTGTTTGGAGCT
GATTGCATATTAATATGTCTATATGTTGATGACATGTTAATCTTTGGAACAAACATAGAGTTAATAACTGATACTAAGTTATTTCTCTCATCACACTTTGAAATG
AAAGACCTAGGAGATGCAGACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACTAGTATGTCTCTATGCCAATCTCACTACGTGGAGAAAATACTAAAGAAG
TTTGATTCCTTTGATGTTTCTCTAGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGATAGTGTGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAAAGAGGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATCATACATGGGACCTAGTAGACCTTCCTATGGGAAACAAACCAATTAGGTGTAAGTGG
ATCTTCAAAAGAAAAACAAAACCAAATGGATCAATAGAAAGATACAAGGCTAGATTAGTGGTAGTAGGGTATACCCAGAAACAAGGCATTGATTATTTTGACACA
TACTCCCCTGTAACCAAGATAACCACAATTAGGGCCTTGATTGCATTAGCCGCAATACATAACCTTCTTATTCACCAAATGGACGTAAAAACTGCTTTTTTAAAT
GGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGTTTTAAAATTTCTGGGCAAGAAAACAAAGTGTGTAAACTGAGAAAATCCCTATACGGTCTCAAG
CAAGCTCCCAAGAAGTGGTATGAAAAGTTTAATAATACGTTAATAAACAATGGATTTAAAATAAATTCCTCAGACACGTGTGTTTATTCAAAGGTGTTTGGAGCT
GATTGCATATTAATATGTCTATATGTTGATGACATGTTAATCTTTGGAACAAACATAGAGTTAATAACTGATACTAAGTTATTTCTCTCATCACACTTTGAAATG
AAAGACCTAGGAGATGCAGACGTAATCCTAGGTGTTAAAATCAGGAAAAACAAAACTAGTATGTCTCTATGCCAATCTCACTACGTGGAGAAAATACTAAAGAAG
TTTGATTCCTTTGATGTTTCTCTAGTGAGAACTCCCTTTGACGCTAGTAAACATCTTAAGAAGAATAAAGGAGATAGTGTGTCTTAA
Protein sequenceShow/hide protein sequence
MWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLN
GDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKKWYEKFNNTLINNGFKINSSDTCVYSKVFGADCILICLYVDDMLIFGTNIELITDTKLFLSSHFEM
KDLGDADVILGVKIRKNKTSMSLCQSHYVEKILKKFDSFDVSLVRTPFDASKHLKKNKGDSVS