; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0244571 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0244571
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr09:7513176..7513952
RNA-Seq ExpressionCmc09g0244571
SyntenyCmc09g0244571
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]5.3e-12888.76Show/hide
Query:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW
        MPFG TN P VF DL+NRIF QYLDQFVI+FI+DILVYSMDKKAHEEHLRIVLQ LRDKQLY KFSKCEFWLNQVVFL HVVSA  VSVD QKVE VVNW
Subjt:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW

Query:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT
        ERPASA EVRSFLGL GYYRRFVEDFS+LALPLTALTRKNA+FEWLDKCEQSFQELKKRLVT PILTLP++GK+YVIYCDA RQGL CVLMQEGKVIAYT
Subjt:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT

Query:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELNLR
        SRQLKKHEYNYPTHDLELA VVLALKIWRHYLFGEKCHIF DHKSLKYIF+QK+LNLR
Subjt:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELNLR

KAA0040576.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-136100Show/hide
Query:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW
        MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW
Subjt:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW

Query:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT
        ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT
Subjt:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT

Query:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHK
        SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHK
Subjt:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHK

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.6e-12284.88Show/hide
Query:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW
        MPFG TN P VF DLMNRIF +YLDQFVI+FI+DILVYS+D+++HEEHLRIVLQTLR+KQLY KFSKCEFWL QVVFL HVVSA  VSVD QKVEAVVNW
Subjt:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW

Query:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT
        ERP SA EVRSFLGL GYYRRF+EDFSRLALPLTALTRKN KFEW DKCEQSFQELKKRLVT PIL LPVTGK YVIYCDA R GL CVLMQ+G VIAY 
Subjt:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT

Query:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELNLR
        SRQLK+HE NYPTHDLELA VVLALKIWRHYLFGEKCHIF DHKSLKYIF+QKELNLR
Subjt:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELNLR

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.6e-12284.88Show/hide
Query:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW
        MPFG TN P VF DLMNRIF +YLDQFVI+FI+DILVYS+D+++HEEHLRIVLQTLR+KQLY KFSKCEFWL QVVFL HVVSA  VSVD QKVEAVVNW
Subjt:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW

Query:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT
        ERP SA EVRSFLGL GYYRRF+EDFSRLALPLTALTRKN KFEW DKCEQSFQELKKRLVT PIL LPVTGK YVIYCDA R GL CVLMQ+G VIAY 
Subjt:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT

Query:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELNLR
        SRQLK+HE NYPTHDLELA VVLALKIWRHYLFGEKCHIF DHKSLKYIF+QKELNLR
Subjt:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELNLR

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]5.3e-12888.76Show/hide
Query:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW
        MPFG TN P VF DL+NRIF QYLDQFVI+FI+DILVYSMDKKAHEEHLRIVLQ LRDKQLY KFSKCEFWLNQVVFL HVVSA  VSVD QKVE VVNW
Subjt:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW

Query:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT
        ERPASA EVRSFLGL GYYRRFVEDFS+LALPLTALTRKNA+FEWLDKCEQSFQELKKRLVT PILTLP++GK+YVIYCDA RQGL CVLMQEGKVIAYT
Subjt:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT

Query:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELNLR
        SRQLKKHEYNYPTHDLELA VVLALKIWRHYLFGEKCHIF DHKSLKYIF+QK+LNLR
Subjt:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELNLR

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase2.5e-12888.76Show/hide
Query:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW
        MPFG TN P VF DL+NRIF QYLDQFVI+FI+DILVYSMDKKAHEEHLRIVLQ LRDKQLY KFSKCEFWLNQVVFL HVVSA  VSVD QKVE VVNW
Subjt:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW

Query:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT
        ERPASA EVRSFLGL GYYRRFVEDFS+LALPLTALTRKNA+FEWLDKCEQSFQELKKRLVT PILTLP++GK+YVIYCDA RQGL CVLMQEGKVIAYT
Subjt:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT

Query:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELNLR
        SRQLKKHEYNYPTHDLELA VVLALKIWRHYLFGEKCHIF DHKSLKYIF+QK+LNLR
Subjt:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELNLR

A0A5A7TEZ1 Reverse transcriptase5.1e-137100Show/hide
Query:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW
        MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW
Subjt:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW

Query:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT
        ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT
Subjt:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT

Query:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHK
        SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHK
Subjt:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHK

A0A5A7U2V7 Reverse transcriptase4.6e-12284.88Show/hide
Query:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW
        MPFG TN P VF DLMNRIF +YLDQFVI+FI+DILVYS+D+++HEEHLRIVLQTLR+KQLY KFSKCEFWL QVVFL HVVSA  VSVD QKVEAVVNW
Subjt:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW

Query:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT
        ERP SA EVRSFLGL GYYRRF+EDFSRLALPLTALTRKN KFEW DKCEQSFQELKKRLVT PIL LPVTGK YVIYCDA R GL CVLMQ+G VIAY 
Subjt:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT

Query:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELNLR
        SRQLK+HE NYPTHDLELA VVLALKIWRHYLFGEKCHIF DHKSLKYIF+QKELNLR
Subjt:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELNLR

A0A5D3BHI1 Reverse transcriptase4.6e-12284.88Show/hide
Query:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW
        MPFG TN P VF DLMNRIF +YLDQFVI+FI+DILVYS+D+++HEEHLRIVLQTLR+KQLY KFSKCEFWL QVVFL HVVSA  VSVD QKVEAVVNW
Subjt:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW

Query:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT
        ERP SA EVRSFLGL GYYRRF+EDFSRLALPLTALTRKN KFEW DKCEQSFQELKKRLVT PIL LPVTGK YVIYCDA R GL CVLMQ+G VIAY 
Subjt:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT

Query:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELNLR
        SRQLK+HE NYPTHDLELA VVLALKIWRHYLFGEKCHIF DHKSLKYIF+QKELNLR
Subjt:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELNLR

A0A5D3BTP3 Reverse transcriptase2.5e-12888.76Show/hide
Query:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW
        MPFG TN P VF DL+NRIF QYLDQFVI+FI+DILVYSMDKKAHEEHLRIVLQ LRDKQLY KFSKCEFWLNQVVFL HVVSA  VSVD QKVE VVNW
Subjt:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW

Query:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT
        ERPASA EVRSFLGL GYYRRFVEDFS+LALPLTALTRKNA+FEWLDKCEQSFQELKKRLVT PILTLP++GK+YVIYCDA RQGL CVLMQEGKVIAYT
Subjt:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYT

Query:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELNLR
        SRQLKKHEYNYPTHDLELA VVLALKIWRHYLFGEKCHIF DHKSLKYIF+QK+LNLR
Subjt:  SRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELNLR

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.4e-4335.41Show/hide
Query:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW
        MPFG  N P  F+  MN I    L++  +++++DI+V+S     H + L +V + L    L  +  KCEF   +  FL HV++ D +  + +K+EA+  +
Subjt:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW

Query:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLD-KCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAY
          P    E+++FLGL GYYR+F+ +F+ +A P+T   +KN K +  + + + +F++LK  +   PIL +P   KK+ +  DA    L  VL Q+G  ++Y
Subjt:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLD-KCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAY

Query:  TSRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELN
         SR L +HE NY T + EL  +V A K +RHYL G    I  DH+ L +++  K+ N
Subjt:  TSRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELN

P0CT34 Transposon Tf2-1 polyprotein3.9e-3330.83Show/hide
Query:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW
        MP+G +  P  F+  +N I  +  +  V+ +++DIL++S  +  H +H++ VLQ L++  L    +KCEF  +QV F+ + +S    +   + ++ V+ W
Subjt:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW

Query:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGK-----
        ++P +  E+R FLG V Y R+F+   S+L  PL  L +K+ +++W     Q+ + +K+ LV+ P+L      KK ++  DA    +  VL Q+       
Subjt:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGK-----

Query:  VIAYTSRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFG--EKCHIFIDHKSL
         + Y S ++ K + NY   D E+  ++ +LK WRHYL    E   I  DH++L
Subjt:  VIAYTSRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFG--EKCHIFIDHKSL

P0CT41 Transposon Tf2-12 polyprotein3.9e-3330.83Show/hide
Query:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW
        MP+G +  P  F+  +N I  +  +  V+ +++DIL++S  +  H +H++ VLQ L++  L    +KCEF  +QV F+ + +S    +   + ++ V+ W
Subjt:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW

Query:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGK-----
        ++P +  E+R FLG V Y R+F+   S+L  PL  L +K+ +++W     Q+ + +K+ LV+ P+L      KK ++  DA    +  VL Q+       
Subjt:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGK-----

Query:  VIAYTSRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFG--EKCHIFIDHKSL
         + Y S ++ K + NY   D E+  ++ +LK WRHYL    E   I  DH++L
Subjt:  VIAYTSRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFG--EKCHIFIDHKSL

P20825 Retrovirus-related Pol polyprotein from transposon 2978.3e-4436.72Show/hide
Query:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW
        MPFG  N P  F+  MN I    L++  +++++DI+++S     H   +++V   L D  L  +  KCEF   +  FL H+V+ D +  +  KV+A+V++
Subjt:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW

Query:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCE--QSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIA
          P    E+R+FLGL GYYR+F+ +++ +A P+T+  +K  K +   K E  ++F++LK  ++  PIL LP   KK+V+  DA    L  VL Q G  I+
Subjt:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCE--QSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIA

Query:  YTSRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKE
        + SR L  HE NY   + EL  +V A K +RHYL G +  I  DH+ L+++ N KE
Subjt:  YTSRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKE

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus8.4e-3632.85Show/hide
Query:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW
        +PFG  N P +F+ +++ I  +++ +   ++I+DI+V+S D   H ++LR+VL +L    L     K  F   QV FL ++V+AD +  D +KV A+   
Subjt:  MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNW

Query:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTR---KNAKFEWLDKCE--------QSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCV
          P S  E++ FLG+  YYR+F++D++++A PLT LTR    N K     K          QSF +LK  L +  IL  P   K + +  DA    +  V
Subjt:  ERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTR---KNAKFEWLDKCE--------QSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCV

Query:  LMQE----GKVIAYTSRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGE-KCHIFIDHKSLKYIFNQKELNLR
        L Q+     + IAY SR L K E NY T + E+  ++ +L   R YL+G     ++ DH+ L +    +  N +
Subjt:  LMQE----GKVIAYTSRQLKKHEYNYPTHDLELAVVVLALKIWRHYLFGE-KCHIFIDHKSLKYIFNQKELNLR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein8.3e-2341.13Show/hide
Query:  HLRIVLQTLRDKQLYTKFSKCEFWLNQVVFL--EHVVSADEVSVDSQKVEAVVNWERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEW
        HL +VLQ     Q Y    KC F   Q+ +L   H++S + VS D  K+EA+V W  P +  E+R FLGL GYYRRFV+++ ++  PLT L +KN+  +W
Subjt:  HLRIVLQTLRDKQLYTKFSKCEFWLNQVVFL--EHVVSADEVSVDSQKVEAVVNWERPASAIEVRSFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEW

Query:  LDKCEQSFQELKKRLVTIPILTLP
         +    +F+ LK  + T+P+L LP
Subjt:  LDKCEQSFQELKKRLVTIPILTLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTCGGTTCAACGAATGAGCCAACAGTTTTCAGGGACCTCATGAACAGGATCTTCGATCAGTATTTAGATCAGTTTGTGATAATGTTCATTAATGACATACTAGT
TTACTCAATGGACAAGAAAGCCCATGAGGAACATCTGAGGATTGTTCTACAAACACTGCGTGATAAACAACTATACACTAAGTTCAGCAAATGTGAGTTTTGGTTGAATC
AAGTGGTGTTCTTAGAGCATGTGGTTTCAGCGGATGAAGTTAGTGTTGATTCGCAGAAAGTGGAAGCTGTTGTCAATTGGGAGAGACCAGCTAGTGCAATAGAGGTACGT
AGTTTCCTAGGCCTTGTCGGATACTACAGACGTTTTGTTGAGGATTTCTCACGGTTAGCATTACCCTTGACAGCTCTGACAAGGAAGAATGCTAAGTTTGAGTGGTTGGA
TAAATGTGAACAAAGTTTTCAAGAGCTGAAGAAGAGATTGGTGACAATACCTATTCTGACACTTCCTGTAACAGGAAAGAAGTATGTGATCTATTGTGATGCTTTGAGGC
AAGGATTAGATTGTGTGCTCATGCAGGAAGGGAAAGTAATAGCGTATACTTCAAGGCAGTTGAAGAAGCATGAGTATAATTACCCTACCCATGATCTTGAGCTAGCAGTA
GTTGTTCTAGCACTGAAGATTTGGAGACATTATTTATTCGGCGAGAAGTGCCACATTTTCATAGATCATAAAAGTCTGAAGTACATCTTTAATCAGAAAGAGCTGAATCT
AAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCATTCGGTTCAACGAATGAGCCAACAGTTTTCAGGGACCTCATGAACAGGATCTTCGATCAGTATTTAGATCAGTTTGTGATAATGTTCATTAATGACATACTAGT
TTACTCAATGGACAAGAAAGCCCATGAGGAACATCTGAGGATTGTTCTACAAACACTGCGTGATAAACAACTATACACTAAGTTCAGCAAATGTGAGTTTTGGTTGAATC
AAGTGGTGTTCTTAGAGCATGTGGTTTCAGCGGATGAAGTTAGTGTTGATTCGCAGAAAGTGGAAGCTGTTGTCAATTGGGAGAGACCAGCTAGTGCAATAGAGGTACGT
AGTTTCCTAGGCCTTGTCGGATACTACAGACGTTTTGTTGAGGATTTCTCACGGTTAGCATTACCCTTGACAGCTCTGACAAGGAAGAATGCTAAGTTTGAGTGGTTGGA
TAAATGTGAACAAAGTTTTCAAGAGCTGAAGAAGAGATTGGTGACAATACCTATTCTGACACTTCCTGTAACAGGAAAGAAGTATGTGATCTATTGTGATGCTTTGAGGC
AAGGATTAGATTGTGTGCTCATGCAGGAAGGGAAAGTAATAGCGTATACTTCAAGGCAGTTGAAGAAGCATGAGTATAATTACCCTACCCATGATCTTGAGCTAGCAGTA
GTTGTTCTAGCACTGAAGATTTGGAGACATTATTTATTCGGCGAGAAGTGCCACATTTTCATAGATCATAAAAGTCTGAAGTACATCTTTAATCAGAAAGAGCTGAATCT
AAGATAG
Protein sequenceShow/hide protein sequence
MPFGSTNEPTVFRDLMNRIFDQYLDQFVIMFINDILVYSMDKKAHEEHLRIVLQTLRDKQLYTKFSKCEFWLNQVVFLEHVVSADEVSVDSQKVEAVVNWERPASAIEVR
SFLGLVGYYRRFVEDFSRLALPLTALTRKNAKFEWLDKCEQSFQELKKRLVTIPILTLPVTGKKYVIYCDALRQGLDCVLMQEGKVIAYTSRQLKKHEYNYPTHDLELAV
VVLALKIWRHYLFGEKCHIFIDHKSLKYIFNQKELNLR