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Cmc09g0244831 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0244831
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr09:7914388..7914777
RNA-Seq ExpressionCmc09g0244831
SyntenyCmc09g0244831
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043244.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.2e-6699.21Show/hide
Query:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
        MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
Subjt:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL

Query:  GHQISKAGVEADEDKIRSMVNWPRPS
        GHQISKAGVEAD+DKIRSMVNWPRPS
Subjt:  GHQISKAGVEADEDKIRSMVNWPRPS

KAA0048168.1 uncharacterized protein E6C27_scaffold63G00690 [Cucumis melo var. makuwa]8.3e-6698.41Show/hide
Query:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
        MKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI+EHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
Subjt:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL

Query:  GHQISKAGVEADEDKIRSMVNWPRPS
        GHQISKAGVEADEDKIRSMVNWPRPS
Subjt:  GHQISKAGVEADEDKIRSMVNWPRPS

TYK08088.1 uncharacterized protein E5676_scaffold265G002470 [Cucumis melo var. makuwa]8.3e-6698.41Show/hide
Query:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
        MKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI+EHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
Subjt:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL

Query:  GHQISKAGVEADEDKIRSMVNWPRPS
        GHQISKAGVEADEDKIRSMVNWPRPS
Subjt:  GHQISKAGVEADEDKIRSMVNWPRPS

TYK14624.1 uncharacterized protein E5676_scaffold1275G00160 [Cucumis melo var. makuwa]4.9e-6697.62Show/hide
Query:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
        MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSD+TEHEKHLGM+FAVLRDNQLYANHKKCVFAHSRIQYL
Subjt:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL

Query:  GHQISKAGVEADEDKIRSMVNWPRPS
        GHQISKAGVEAD+DKIRSMVNWPRPS
Subjt:  GHQISKAGVEADEDKIRSMVNWPRPS

TYK29308.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]4.9e-6697.62Show/hide
Query:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
        MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSD+TEHEKHLGM+FAVLRDNQLYANHKKCVFAHSRIQYL
Subjt:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL

Query:  GHQISKAGVEADEDKIRSMVNWPRPS
        GHQISKAGVEAD+DKIRSMVNWPRPS
Subjt:  GHQISKAGVEADEDKIRSMVNWPRPS

TrEMBL top hitse value%identityAlignment
A0A5A7TIU7 Transposon Ty3-G Gag-Pol polyprotein1.1e-6699.21Show/hide
Query:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
        MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
Subjt:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL

Query:  GHQISKAGVEADEDKIRSMVNWPRPS
        GHQISKAGVEAD+DKIRSMVNWPRPS
Subjt:  GHQISKAGVEADEDKIRSMVNWPRPS

A0A5A7TYW6 Reverse transcriptase domain-containing protein4.0e-6698.41Show/hide
Query:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
        MKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI+EHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
Subjt:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL

Query:  GHQISKAGVEADEDKIRSMVNWPRPS
        GHQISKAGVEADEDKIRSMVNWPRPS
Subjt:  GHQISKAGVEADEDKIRSMVNWPRPS

A0A5D3CA79 Reverse transcriptase domain-containing protein4.0e-6698.41Show/hide
Query:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
        MKEEDIEKT FRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDI+EHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
Subjt:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL

Query:  GHQISKAGVEADEDKIRSMVNWPRPS
        GHQISKAGVEADEDKIRSMVNWPRPS
Subjt:  GHQISKAGVEADEDKIRSMVNWPRPS

A0A5D3CUL0 Reverse transcriptase domain-containing protein2.4e-6697.62Show/hide
Query:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
        MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSD+TEHEKHLGM+FAVLRDNQLYANHKKCVFAHSRIQYL
Subjt:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL

Query:  GHQISKAGVEADEDKIRSMVNWPRPS
        GHQISKAGVEAD+DKIRSMVNWPRPS
Subjt:  GHQISKAGVEADEDKIRSMVNWPRPS

A0A5D3E0Q7 Transposon Ty3-G Gag-Pol polyprotein2.4e-6697.62Show/hide
Query:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
        MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSD+TEHEKHLGM+FAVLRDNQLYANHKKCVFAHSRIQYL
Subjt:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL

Query:  GHQISKAGVEADEDKIRSMVNWPRPS
        GHQISKAGVEAD+DKIRSMVNWPRPS
Subjt:  GHQISKAGVEADEDKIRSMVNWPRPS

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.3e-2542.86Show/hide
Query:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
        M  E + KTAF T  GHYE+L MPFGL NAPATFQ  MN + +P L +  LV+ DDI+V+S+ + EH + LG+VF  L    L     KC F      +L
Subjt:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL

Query:  GHQISKAGVEADEDKIRSMVNWPRPS
        GH ++  G++ + +KI ++  +P P+
Subjt:  GHQISKAGVEADEDKIRSMVNWPRPS

P20825 Retrovirus-related Pol polyprotein from transposon 2971.0e-2643.65Show/hide
Query:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
        M EE I KTAF T  GHYE+L MPFGL NAPATFQ  MN + +P L +  LV+ DDI+++S+ +TEH   + +VF  L D  L     KC F      +L
Subjt:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL

Query:  GHQISKAGVEADEDKIRSMVNWPRPS
        GH ++  G++ +  K++++V++P P+
Subjt:  GHQISKAGVEADEDKIRSMVNWPRPS

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.4e-1838.76Show/hide
Query:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
        M+ +D  KTAF T  G YE+ VMPFGL NAP+TF   M   F+    R V V+ DDIL++S    EH KHL  V   L++  L    KKC FA    ++L
Subjt:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL

Query:  GHQISKAGVEADEDKIRSMVNWPRPSLTR
        G+ I    +   + K  ++ ++P P   +
Subjt:  GHQISKAGVEADEDKIRSMVNWPRPSLTR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.2e-2240.48Show/hide
Query:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
        MKE DI KTAF T  G YEFL +PFGL NAPA FQ +++ + +  + +   V+ DDI+V+S D   H K+L +V A L    L  N +K  F  +++++L
Subjt:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL

Query:  GHQISKAGVEADEDKIRSMVNWPRPS
        G+ ++  G++AD  K+R++   P P+
Subjt:  GHQISKAGVEADEDKIRSMVNWPRPS

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.4e-1838.76Show/hide
Query:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL
        M+ +D  KTAF T  G YE+ VMPFGL NAP+TF   M   F+    R V V+ DDIL++S    EH KHL  V   L++  L    KKC FA    ++L
Subjt:  MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYL

Query:  GHQISKAGVEADEDKIRSMVNWPRPSLTR
        G+ I    +   + K  ++ ++P P   +
Subjt:  GHQISKAGVEADEDKIRSMVNWPRPSLTR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAAGAAGATATAGAAAAGACAGCGTTTCGCACCCATGAAGGCCATTATGAATTCCTGGTGATGCCTTTCGGTCTCACAAATGCACCAGCAACGTTTCAATCACT
GATGAATCAGGTTTTCAAGCCCTTCCTTAGACGTTGTGTTTTGGTATTTTTTGACGATATCTTAGTATATAGCAGTGACATAACTGAACATGAGAAACACCTAGGAATGG
TTTTTGCTGTGCTAAGGGATAATCAACTTTATGCCAATCACAAGAAATGTGTATTTGCTCATTCTAGAATCCAATATTTGGGACACCAAATATCCAAGGCAGGGGTAGAG
GCGGATGAAGACAAAATTAGAAGTATGGTAAATTGGCCAAGACCTTCATTGACAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAAGAAGATATAGAAAAGACAGCGTTTCGCACCCATGAAGGCCATTATGAATTCCTGGTGATGCCTTTCGGTCTCACAAATGCACCAGCAACGTTTCAATCACT
GATGAATCAGGTTTTCAAGCCCTTCCTTAGACGTTGTGTTTTGGTATTTTTTGACGATATCTTAGTATATAGCAGTGACATAACTGAACATGAGAAACACCTAGGAATGG
TTTTTGCTGTGCTAAGGGATAATCAACTTTATGCCAATCACAAGAAATGTGTATTTGCTCATTCTAGAATCCAATATTTGGGACACCAAATATCCAAGGCAGGGGTAGAG
GCGGATGAAGACAAAATTAGAAGTATGGTAAATTGGCCAAGACCTTCATTGACAAGATAG
Protein sequenceShow/hide protein sequence
MKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSSDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVE
ADEDKIRSMVNWPRPSLTR