| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0036643.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 5.4e-82 | 94.48 | Show/hide |
Query: MHDPEIVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHT
MHDPEIVSE VSE VDTPNLSCELE RRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNL+LI+ED KTYQEALNSVDS MWKEAIKSELDSL MNHT
Subjt: MHDPEIVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHT
Query: WELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR
WELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR
Subjt: WELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR
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| KAA0038001.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 1.2e-73 | 88.68 | Show/hide |
Query: MHDPE---IVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
MHDPE IVSET VSE V+T NL CELELRRSKRQRTEKSF PDFLSTFIVERRDEID NFTNLYLIDEDPKTYQE LNSV+ SMWKEAIKSELDSLVM
Subjt: MHDPE---IVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
Query: NHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPV
NHTW+LVDLPMGNKPIRC+WIFKRKTKPNG +ERYKARLVVVGYTQKQG+DYFDTYSPV
Subjt: NHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPV
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| KAA0042080.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 1.3e-78 | 91.07 | Show/hide |
Query: MHDPE---IVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
MHDPE IVSE VSETVDT NL CELELRRSKRQRTEKSFG DFLSTFIVERRDEID NFTNLYLIDEDPKTYQEALNSVD SMWKEAI SELDSLVM
Subjt: MHDPE---IVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
Query: NHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRAL
NHTW+LVDLPM NKPIRCKWIFKRKTKPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIRAL
Subjt: NHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRAL
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| TYJ97996.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 4.5e-68 | 91.72 | Show/hide |
Query: MHDPE---IVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
MHDPE IVSET VSETV+T NL CELEL RSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSV+SSMWKEAIKSELDSLVM
Subjt: MHDPE---IVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
Query: NHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYT
NHTW+LVDLPMGNKPIRCKWIFKRKTKPNG IERYK RLVVVGYT
Subjt: NHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYT
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| TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 2.1e-97 | 96.79 | Show/hide |
Query: MHDPEIVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHT
MHDPEIVSE VSETVDTPNLSCELE RRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNL+LIDEDPKTYQEALNSVDS MWKEAIKSELDSL MNHT
Subjt: MHDPEIVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHT
Query: WELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLN
WELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLN
Subjt: WELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLN
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7T166 Ty1-copia retrotransposon protein | 2.6e-82 | 94.48 | Show/hide |
Query: MHDPEIVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHT
MHDPEIVSE VSE VDTPNLSCELE RRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNL+LI+ED KTYQEALNSVDS MWKEAIKSELDSL MNHT
Subjt: MHDPEIVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHT
Query: WELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR
WELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR
Subjt: WELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR
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| A0A5A7T8N6 Ty1-copia retrotransposon protein | 5.9e-74 | 88.68 | Show/hide |
Query: MHDPE---IVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
MHDPE IVSET VSE V+T NL CELELRRSKRQRTEKSF PDFLSTFIVERRDEID NFTNLYLIDEDPKTYQE LNSV+ SMWKEAIKSELDSLVM
Subjt: MHDPE---IVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
Query: NHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPV
NHTW+LVDLPMGNKPIRC+WIFKRKTKPNG +ERYKARLVVVGYTQKQG+DYFDTYSPV
Subjt: NHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPV
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| A0A5A7TFH9 Ty1-copia retrotransposon protein | 6.1e-79 | 91.07 | Show/hide |
Query: MHDPE---IVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
MHDPE IVSE VSETVDT NL CELELRRSKRQRTEKSFG DFLSTFIVERRDEID NFTNLYLIDEDPKTYQEALNSVD SMWKEAI SELDSLVM
Subjt: MHDPE---IVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
Query: NHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRAL
NHTW+LVDLPM NKPIRCKWIFKRKTKPNG IERYKARLVVVGYTQKQG+DYFDTYSPVTKITTIRAL
Subjt: NHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRAL
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| A0A5D3BFX4 Ty1-copia retrotransposon protein | 2.2e-68 | 91.72 | Show/hide |
Query: MHDPE---IVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
MHDPE IVSET VSETV+T NL CELEL RSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSV+SSMWKEAIKSELDSLVM
Subjt: MHDPE---IVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVM
Query: NHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYT
NHTW+LVDLPMGNKPIRCKWIFKRKTKPNG IERYK RLVVVGYT
Subjt: NHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYT
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| A0A5D3C5T2 Ty1-copia retrotransposon protein | 1.0e-97 | 96.79 | Show/hide |
Query: MHDPEIVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHT
MHDPEIVSE VSETVDTPNLSCELE RRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNL+LIDEDPKTYQEALNSVDS MWKEAIKSELDSL MNHT
Subjt: MHDPEIVSETLVSETVDTPNLSCELELRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHT
Query: WELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLN
WELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLN
Subjt: WELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLN
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 1.0e-22 | 34.97 | Show/hide |
Query: SETLVSETVDTPNLSCELEL--RRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDED-PKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELV
+E L +D P + +E+ RRS+R +T+ + E + ++ N + I D P ++ E D S W+EAI +EL++ +N+TW +
Subjt: SETLVSETVDTPNLSCELEL--RRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDED-PKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELV
Query: DLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLN
P + +W+F K G RYKARLV G+TQK +DY +T++PV +I++ R +++L +NL +HQMDVKTAFLN
Subjt: DLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLN
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.0e-27 | 41.1 | Show/hide |
Query: LRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWIFKRKTKPN
LRRS+R R E P ST V D D +P++ +E L+ + + +A++ E++SL N T++LV+LP G +P++CKW+FK K +
Subjt: LRRSKRQRTEKSFGPDFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWIFKRKTKPN
Query: GLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNDD
+ RYKARLVV G+ QK+G+D+ + +SPV K+T+IR +++LAA +L + Q+DVKTAFL+ D
Subjt: GLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIHQMDVKTAFLNDD
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| P92520 Uncharacterized mitochondrial protein AtMg00820 | 5.4e-16 | 40 | Show/hide |
Query: IDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRA
I ++PK+ AL W +A++ ELD+L N TW LV P+ + CKW+FK K +G ++R KARLV G+ Q++G+ + +TYSPV + TIR
Subjt: IDEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPIRCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRA
Query: LIALA
++ +A
Subjt: LIALA
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 5.6e-21 | 40.98 | Show/hide |
Query: DEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPI-RCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRA
+ +P+T A+ ++ W+ A+ SE+++ + NHTW+LV P + I C+WIF +K +G + RYKARLV GY Q+ G+DY +T+SPV K T+IR
Subjt: DEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPI-RCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRA
Query: LIALAAIHNLLIHQMDVKTAFL
++ +A + I Q+DV AFL
Subjt: LIALAAIHNLLIHQMDVKTAFL
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 7.3e-21 | 40.98 | Show/hide |
Query: DEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPI-RCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRA
+ +P+T A+ ++ W++A+ SE+++ + NHTW+LV P + I C+WIF +K +G + RYKARLV GY Q+ G+DY +T+SPV K T+IR
Subjt: DEDPKTYQEALNSVDSSMWKEAIKSELDSLVMNHTWELVDLPMGNKPI-RCKWIFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRA
Query: LIALAAIHNLLIHQMDVKTAFL
++ +A + I Q+DV AFL
Subjt: LIALAAIHNLLIHQMDVKTAFL
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