; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0245621 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0245621
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr09:9158753..9159655
RNA-Seq ExpressionCmc09g0245621
SyntenyCmc09g0245621
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047979.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.5e-13185.25Show/hide
Query:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI
        LFLACKGA+TCENSAWYLDSG SNH+CGSKSMF+ELDESVGGDIV GDATKI VKGKG+ILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNIL+
Subjt:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI

Query:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI
        KDYSLLIRDNH K+IAKV+MTKNRMFLLNIQTDVA+CLKSCLKD NWIWHLRF HLNFDGLRLLARK+MVKGL YVK PD+L       +  ++ F    
Subjt:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI

Query:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR
        S RARRPLELVHTDLCG IKPSSF KNNYFLLFIDDFSR TWVYFVKEKSEVF MFKRFKALVEKESGYYIK LRSDR
Subjt:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR

TYJ96309.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.5e-13185.25Show/hide
Query:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI
        LFLACKGA+TCENSAWYLDSG SNH+CGSKSMF+ELDESVGGDIV GDATKI VKGKG+ILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNIL+
Subjt:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI

Query:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI
        KDYSLLIRDNH K+IAKV+MTKNRMFLLNIQTDVA+CLKSCLKD NWIWHLRF HLNFDGLRLLARK+MVKGL YVK PD+L       +  ++ F    
Subjt:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI

Query:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR
        S RARRPLELVHTDLCG IKPSSF KNNYFLLFIDDFSR TWVYFVKEKSEVF MFKRFKALVEKESGYYIK LRSDR
Subjt:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR

TYK06895.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.5e-13185.25Show/hide
Query:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI
        LFLACKGA+TCENSAWYLDSG SNH+CGSKSMF+ELDESVGGDIV GDATKI VKGKG+ILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNIL+
Subjt:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI

Query:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI
        KDYSLLIRDNH K+IAKV+MTKNRMFLLNIQTDVA+CLKSCLKD NWIWHLRF HLNFDGLRLLARK+MVKGL YVK PD+L       +  ++ F    
Subjt:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI

Query:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR
        S RARRPLELVHTDLCG IKPSSF KNNYFLLFIDDFSR TWVYFVKEKSEVF MFKRFKALVEKESGYYIK LRSDR
Subjt:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR

TYK18362.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.5e-13185.25Show/hide
Query:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI
        LFLACKGA+TCENSAWYLDSG SNH+CGSKSMF+ELDESVGGDIV GDATKI VKGKG+ILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNIL+
Subjt:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI

Query:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI
        KDYSLLIRDNH K+IAKV+MTKNRMFLLNIQTDVA+CLKSCLKD NWIWHLRF HLNFDGLRLLARK+MVKGL YVK PD+L       +  ++ F    
Subjt:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI

Query:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR
        S RARRPLELVHTDLCG IKPSSF KNNYFLLFIDDFSR TWVYFVKEKSEVF MFKRFKALVEKESGYYIK LRSDR
Subjt:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR

TYK29027.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.5e-13185.61Show/hide
Query:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI
        LFLACKGA+TCENSAWYLDSG SNH+CGSKSMFVELDESVGGDIV GDATKI VKGKG+ILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNIL+
Subjt:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI

Query:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI
        KDYSLLIRDNH K+IAKV+MTKNRMFLLNIQTDVA+CLKSCLKD NWIWHLRF HLNFDGLRLLARK+MVKGL YVK PD+L       +  ++ F    
Subjt:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI

Query:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR
        S RARRPLELVHTDLCG IKPSSF KNNYFLLFIDDFSR TWVYFVKEKSEVF MFKRFKALVEKESGYYIK LRSDR
Subjt:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR

TrEMBL top hitse value%identityAlignment
A0A5A7SJX6 Retrovirus-related Pol polyprotein from transposon TNT 1-942.2e-13185.25Show/hide
Query:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI
        LFLACKGA+TCENSAWYLDSG SNH+CGSKSMF+ELDESVGGDIV GDATKI VKGKG+ILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNIL+
Subjt:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI

Query:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI
        KDYSLLIRDNH K+IAKV+MTKNRMFLLNIQTDVA+CLKSCLKD NWIWHLRF HLNFDGLRLLARK+MVKGL YVK PD+L       +  ++ F    
Subjt:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI

Query:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR
        S RARRPLELVHTDLCG IKPSSF KNNYFLLFIDDFSR TWVYFVKEKSEVF MFKRFKALVEKESGYYIK LRSDR
Subjt:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR

A0A5A7V308 Retrovirus-related Pol polyprotein from transposon TNT 1-942.2e-13185.25Show/hide
Query:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI
        LFLACKGA+TCENSAWYLDSG SNH+CGSKSMF+ELDESVGGDIV GDATKI VKGKG+ILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNIL+
Subjt:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI

Query:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI
        KDYSLLIRDNH K+IAKV+MTKNRMFLLNIQTDVA+CLKSCLKD NWIWHLRF HLNFDGLRLLARK+MVKGL YVK PD+L       +  ++ F    
Subjt:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI

Query:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR
        S RARRPLELVHTDLCG IKPSSF KNNYFLLFIDDFSR TWVYFVKEKSEVF MFKRFKALVEKESGYYIK LRSDR
Subjt:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR

A0A5A7V3X9 Retrovirus-related Pol polyprotein from transposon TNT 1-942.2e-13185.25Show/hide
Query:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI
        LFLACKGA+TCENSAWYLDSG SNH+CGSKSMF+ELDESVGGDIV GDATKI VKGKG+ILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNIL+
Subjt:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI

Query:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI
        KDYSLLIRDNH K+IAKV+MTKNRMFLLNIQTDVA+CLKSCLKD NWIWHLRF HLNFDGLRLLARK+MVKGL YVK PD+L       +  ++ F    
Subjt:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI

Query:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR
        S RARRPLELVHTDLCG IKPSSF KNNYFLLFIDDFSR TWVYFVKEKSEVF MFKRFKALVEKESGYYIK LRSDR
Subjt:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR

A0A5D3D497 Retrovirus-related Pol polyprotein from transposon TNT 1-942.2e-13185.25Show/hide
Query:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI
        LFLACKGA+TCENSAWYLDSG SNH+CGSKSMF+ELDESVGGDIV GDATKI VKGKG+ILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNIL+
Subjt:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI

Query:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI
        KDYSLLIRDNH K+IAKV+MTKNRMFLLNIQTDVA+CLKSCLKD NWIWHLRF HLNFDGLRLLARK+MVKGL YVK PD+L       +  ++ F    
Subjt:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI

Query:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR
        S RARRPLELVHTDLCG IKPSSF KNNYFLLFIDDFSR TWVYFVKEKSEVF MFKRFKALVEKESGYYIK LRSDR
Subjt:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR

A0A5D3DYS0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-13185.61Show/hide
Query:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI
        LFLACKGA+TCENSAWYLDSG SNH+CGSKSMFVELDESVGGDIV GDATKI VKGKG+ILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNIL+
Subjt:  LFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILI

Query:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI
        KDYSLLIRDNH K+IAKV+MTKNRMFLLNIQTDVA+CLKSCLKD NWIWHLRF HLNFDGLRLLARK+MVKGL YVK PD+L       +  ++ F    
Subjt:  KDYSLLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSS----WQTFKEDFSTRI

Query:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR
        S RARRPLELVHTDLCG IKPSSF KNNYFLLFIDDFSR TWVYFVKEKSEVF MFKRFKALVEKESGYYIK LRSDR
Subjt:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDR

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.4e-2026.96Show/hide
Query:  ENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKG-------RILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILIKDYS
        +N  + LDSG S+H+   +S++ +  E V          KI+V  +G       R ++ L+N     + +V +      N++S+ +L E G +I      
Subjt:  ENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKG-------RILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILIKDYS

Query:  LLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDR--------LSSWQTFKEDFSTRI
        + I  N   M+ K     N + ++N Q   A  + +  K+   +WH RF H++   L  + RK+M    S + + +         L+  Q        + 
Subjt:  LLIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDR--------LSSWQTFKEDFSTRI

Query:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDREVNSLQMNSKLFAQK
            +RPL +VH+D+CG I P + D  NYF++F+D F+     Y +K KS+VFSMF+ F A  E      +  L  D     L    + F  K
Subjt:  SLRARRPLELVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDREVNSLQMNSKLFAQK

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-2428.9Show/hide
Query:  SAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILIKDYSLLIRDNHYK
        S W +D+  S+H    + +F        G + +G+ +   + G G I I    G    + +V +VP+++ N++S   L   GY     +    +      
Subjt:  SAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILIKDYSLLIRDNHYK

Query:  MIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMV---KGLSYVKHPDRLSSWQTFKEDFSTRISLRARRPLELVHTD
        ++    + +  ++  N +    +   +  + +  +WH R  H++  GL++LA+K ++   KG + VK  D     +  +  F T  S R    L+LV++D
Subjt:  MIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMV---KGLSYVKHPDRLSSWQTFKEDFSTRISLRARRPLELVHTD

Query:  LCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSD
        +CG ++  S   N YF+ FIDD SR  WVY +K K +VF +F++F ALVE+E+G  +K LRSD
Subjt:  LCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSD

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.2e-1426.32Show/hide
Query:  WYLDSGTSNHICGS-KSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLE-KGYNILIKDYSLLIRDNHYK
        W LDSG ++HI     ++ +    + G D+++ D + I +   G   ++ K+ +   + N+ YVPN+  N++S+ +L    G ++     S  ++D +  
Subjt:  WYLDSGTSNHICGS-KSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLE-KGYNILIKDYSLLIRDNHYK

Query:  MIAKVEMTKNRMFLLNIQTD--VAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLS----YVKHPDRLSSWQTFKEDFSTRISLRARRPLELV
        +      TK+ ++   I +   V+       K T+  WH R  H     L  +     +  L+    ++   D L + ++ K  FS + ++ + RPLE +
Subjt:  MIAKVEMTKNRMFLLNIQTD--VAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLS----YVKHPDRLSSWQTFKEDFSTRISLRARRPLELV

Query:  HTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSD
        ++D+  S    S D   Y+++F+D F+R TW+Y +K+KS+V   F  FK L+E      I T  SD
Subjt:  HTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE25.5e-1526.87Show/hide
Query:  WYLDSGTSNHICGS-KSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKG-YNILIKDYSLLIRDNHYK
        W LDSG ++HI     ++      + G D++I D + I +   G   +   +   + ++ V YVPN+  N++S+ +L      ++     S  ++D +  
Subjt:  WYLDSGTSNHICGS-KSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKG-YNILIKDYSLLIRDNHYK

Query:  MIAKVEMTKNRMFLLNIQTD--VAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSSW------QTFKEDFSTRISLRARRPLE
        +      TK+ ++   I +   V+     C K T+  WH R  H     L +L        L  +    +L S       ++ K  FS   ++ + +PLE
Subjt:  MIAKVEMTKNRMFLLNIQTD--VAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSSW------QTFKEDFSTRISLRARRPLE

Query:  LVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSD
         +++D+  S    S D   Y+++F+D F+R TW+Y +K+KS+V   F  FK+LVE      I TL SD
Subjt:  LVHTDLCGSIKPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSD

Arabidopsis top hitse value%identityAlignment
AT3G21000.1 Gag-Pol-related retrotransposon family protein3.6e-0932.61Show/hide
Query:  GAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNI
        GAKT ++  W +      ++      F  LD +    +   D T + V+GKG + I +K GK + I NV +VP +  N+LS G+++ K Y+I
Subjt:  GAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAGAAAGATATTGTTTCTAGCATGCAAAGGTGCGAAAACATGTGAAAATAGTGCATGGTATCTCGATAGTGGTACAAGCAATCACATATGTGGAAGTAAATCAAT
GTTCGTGGAGCTTGATGAATCTGTTGGTGGCGATATCGTAATTGGTGATGCCACAAAAATTTCAGTTAAAGGAAAAGGTAGAATTTTGATCAATTTGAAGAATGGGAAGC
ATGAGTTTATCTCTAATGTTTATTATGTGCCTAATATGAAGAACAACATTTTGAGTTTGGGGCAACTCTTAGAGAAAGGCTATAATATTTTGATAAAGGATTATAGTCTT
TTGATAAGAGATAATCATTACAAAATGATTGCTAAAGTTGAAATGACGAAAAATAGAATGTTTTTATTAAACATTCAAACTGATGTTGCTAAATGTTTAAAGTCATGTTT
GAAAGATACCAATTGGATTTGGCACTTGAGATTTGAGCATTTGAACTTTGATGGCTTGAGATTATTAGCCAGAAAGGACATGGTGAAAGGGTTGTCATATGTCAAACATC
CAGATCGGTTGTCTTCATGGCAAACATTCAAGGAAGATTTTTCCACAAGAATCTCTTTGAGAGCAAGGAGACCACTGGAGTTAGTTCACACGGATCTTTGTGGATCGATC
AAACCAAGTTCTTTCGATAAGAATAATTATTTCTTATTATTTATTGATGATTTCAGCCGAACAACTTGGGTTTACTTTGTCAAGGAGAAATCAGAAGTATTTAGCATGTT
CAAGAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACATTAAAACTTTGAGATCAGACAGGGAGGTGAATTCACTTCAAATGAATTCAAAACTTTTTGCACAAA
AAATGGAATCCGTCGACCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGAGAAAGATATTGTTTCTAGCATGCAAAGGTGCGAAAACATGTGAAAATAGTGCATGGTATCTCGATAGTGGTACAAGCAATCACATATGTGGAAGTAAATCAAT
GTTCGTGGAGCTTGATGAATCTGTTGGTGGCGATATCGTAATTGGTGATGCCACAAAAATTTCAGTTAAAGGAAAAGGTAGAATTTTGATCAATTTGAAGAATGGGAAGC
ATGAGTTTATCTCTAATGTTTATTATGTGCCTAATATGAAGAACAACATTTTGAGTTTGGGGCAACTCTTAGAGAAAGGCTATAATATTTTGATAAAGGATTATAGTCTT
TTGATAAGAGATAATCATTACAAAATGATTGCTAAAGTTGAAATGACGAAAAATAGAATGTTTTTATTAAACATTCAAACTGATGTTGCTAAATGTTTAAAGTCATGTTT
GAAAGATACCAATTGGATTTGGCACTTGAGATTTGAGCATTTGAACTTTGATGGCTTGAGATTATTAGCCAGAAAGGACATGGTGAAAGGGTTGTCATATGTCAAACATC
CAGATCGGTTGTCTTCATGGCAAACATTCAAGGAAGATTTTTCCACAAGAATCTCTTTGAGAGCAAGGAGACCACTGGAGTTAGTTCACACGGATCTTTGTGGATCGATC
AAACCAAGTTCTTTCGATAAGAATAATTATTTCTTATTATTTATTGATGATTTCAGCCGAACAACTTGGGTTTACTTTGTCAAGGAGAAATCAGAAGTATTTAGCATGTT
CAAGAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACATTAAAACTTTGAGATCAGACAGGGAGGTGAATTCACTTCAAATGAATTCAAAACTTTTTGCACAAA
AAATGGAATCCGTCGACCTATGA
Protein sequenceShow/hide protein sequence
MLRKILFLACKGAKTCENSAWYLDSGTSNHICGSKSMFVELDESVGGDIVIGDATKISVKGKGRILINLKNGKHEFISNVYYVPNMKNNILSLGQLLEKGYNILIKDYSL
LIRDNHYKMIAKVEMTKNRMFLLNIQTDVAKCLKSCLKDTNWIWHLRFEHLNFDGLRLLARKDMVKGLSYVKHPDRLSSWQTFKEDFSTRISLRARRPLELVHTDLCGSI
KPSSFDKNNYFLLFIDDFSRTTWVYFVKEKSEVFSMFKRFKALVEKESGYYIKTLRSDREVNSLQMNSKLFAQKMESVDL