CuGenDBv2

Gene ID	Cmc09g0245631
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr09:9159867..9160382
RNA-Seq Expression	Cmc09g0245631
Synteny	Cmc09g0245631
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0016310 - phosphorylation (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016301 - kinase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031444.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

9.0e-76

87.72

Show/hide

Query:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS
        MA AHI D+K SKLDDKSEKY+FVGYDAS KGYKLYNPVTKK IVSRDVVFDEEASWNWNDEPEDYKF+ FP +HDE SDIAS   PPTSPI PQQSTSS
Subjt:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS

Query:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT
        S ASSSEGPRGMRSL+DIYDETEELSQSFNNLTLFCLFGDSE LNFEEA QNDKWKIAM+EEIKAIKKNDT
Subjt:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT

KAA0047979.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.5e-75

87.13

Show/hide

Query:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS
        MA AHI D+K SKLDDKSEKY+FVGYDAS KGYKLYNPVTKK IVSRDVVFDEEASWNWNDEPEDYKF+ FP +HDE SDIAS   PPTSPI PQQSTSS
Subjt:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS

Query:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT
        S ASSSEGPRGMRSL+DIYDETEELSQSFNNLTLFCLF DSE LNFEEA QNDKWKIAM+EEIKAIKKNDT
Subjt:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT

KAA0055877.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

9.0e-76

87.72

Show/hide

Query:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS
        MA AHI D+K SKLDDKSEKY+FVGYDAS KGYKLYNPVTKK IVSRDVVFDEEASWNWNDEPEDYKF+ FP +HDE SDIAS   PPTSPI PQQSTSS
Subjt:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS

Query:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT
        S ASSSEGPRGMRSL+DIYDETEELSQSFNNLTLFCLFGDSE LNFEEA QNDKWKIAM+EEIKAIKKNDT
Subjt:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT

KAA0056914.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

9.0e-76

87.72

Show/hide

Query:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS
        MA AHI D+K SKLDDKSEKY+FVGYDAS KGYKLYNPVTKK IVSRDVVFDEEASWNWNDEPEDYKF+ FP +HDE SDIAS   PPTSPI PQQSTSS
Subjt:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS

Query:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT
        S ASSSEGPRGMRSL+DIYDETEELSQSFNNLTLFCLFGDSE LNFEEA QNDKWKIAM+EEIKAIKKNDT
Subjt:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT

KAA0060896.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

9.0e-76

87.72

Show/hide

Query:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS
        MA AHI D+K SKLDDKSEKY+FVGYDAS KGYKLYNPVTKK IVSRDVVFDEEASWNWNDEPEDYKF+ FP +HDE SDIAS   PPTSPI PQQSTSS
Subjt:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS

Query:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT
        S ASSSEGPRGMRSL+DIYDETEELSQSFNNLTLFCLFGDSE LNFEEA QNDKWKIAM+EEIKAIKKNDT
Subjt:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SJX6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.4e-76

87.72

Show/hide

Query:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS
        MA AHI D+K SKLDDKSEKY+FVGYDAS KGYKLYNPVTKK IVSRDVVFDEEASWNWNDEPEDYKF+ FP +HDE SDIAS   PPTSPI PQQSTSS
Subjt:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS

Query:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT
        S ASSSEGPRGMRSL+DIYDETEELSQSFNNLTLFCLFGDSE LNFEEA QNDKWKIAM+EEIKAIKKNDT
Subjt:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT

A0A5A7UMQ1 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.4e-76

87.72

Show/hide

Query:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS
        MA AHI D+K SKLDDKSEKY+FVGYDAS KGYKLYNPVTKK IVSRDVVFDEEASWNWNDEPEDYKF+ FP +HDE SDIAS   PPTSPI PQQSTSS
Subjt:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS

Query:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT
        S ASSSEGPRGMRSL+DIYDETEELSQSFNNLTLFCLFGDSE LNFEEA QNDKWKIAM+EEIKAIKKNDT
Subjt:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT

A0A5A7UNW6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.4e-76

87.72

Show/hide

Query:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS
        MA AHI D+K SKLDDKSEKY+FVGYDAS KGYKLYNPVTKK IVSRDVVFDEEASWNWNDEPEDYKF+ FP +HDE SDIAS   PPTSPI PQQSTSS
Subjt:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS

Query:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT
        S ASSSEGPRGMRSL+DIYDETEELSQSFNNLTLFCLFGDSE LNFEEA QNDKWKIAM+EEIKAIKKNDT
Subjt:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT

A0A5A7V308 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.4e-76

87.72

Show/hide

Query:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS
        MA AHI D+K SKLDDKSEKY+FVGYDAS KGYKLYNPVTKK IVSRDVVFDEEASWNWNDEPEDYKF+ FP +HDE SDIAS   PPTSPI PQQSTSS
Subjt:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS

Query:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT
        S ASSSEGPRGMRSL+DIYDETEELSQSFNNLTLFCLFGDSE LNFEEA QNDKWKIAM+EEIKAIKKNDT
Subjt:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT

A0A5A7V3X9 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.2e-75

87.13

Show/hide

Query:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS
        MA AHI D+K SKLDDKSEKY+FVGYDAS KGYKLYNPVTKK IVSRDVVFDEEASWNWNDEPEDYKF+ FP +HDE SDIAS   PPTSPI PQQSTSS
Subjt:  MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSS

Query:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT
        S ASSSEGPRGMRSL+DIYDETEELSQSFNNLTLFCLF DSE LNFEEA QNDKWKIAM+EEIKAIKKNDT
Subjt:  SFASSSEGPRGMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.3e-05

50.94

Show/hide

Query:  ASAHIHDK-KHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDE
        A+ ++H K K  K DDKS K +FVGY+ +  G+KL++ V +K IV+RDVV DE
Subjt:  ASAHIHDK-KHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDE

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-07

37.96

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Query:  ASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSSS
        A AH+  ++ +KLDDKS   +F+GY     GY+L++PV KK+I SRDVVF E       D  E  K  + P+       I S S  PTS     +ST+  
Subjt:  ASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSSS

Query:  FASSSEGP
         +   E P
Subjt:  FASSSEGP

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCTTCTGCGCATATACATGATAAAAAACATAGTAAGCTTGATGATAAAAGTGAGAAATATCTTTTTGTTGGCTATGATGCAAGCTTAAAAGGCTACAAGCTTTATAA
TCCTGTTACAAAGAAAATGATCGTAAGCAGAGATGTTGTGTTTGATGAAGAAGCATCATGGAATTGGAATGACGAACCAGAAGATTACAAATTTGTGCTTTTTCCCCATG
ATCATGATGAGCTTAGTGACATTGCTTCTCCATCAACACCGCCAACATCGCCAATCATTCCACAACAAAGCACATCTTCATCATTTGCAAGTTCAAGTGAAGGGCCTCGT
GGTATGAGAAGCTTACGAGACATATATGATGAAACTGAAGAGTTAAGTCAAAGTTTTAATAACCTTACTCTTTTTTGTCTATTTGGTGACAGTGAACTTTTGAATTTTGA
AGAAGCTTTGCAAAATGACAAATGGAAGATTGCTATGAATGAAGAGATAAAAGCCATAAAAAAGAATGATACATAG

mRNA sequence

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Protein sequence

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MASAHIHDKKHSKLDDKSEKYLFVGYDASLKGYKLYNPVTKKMIVSRDVVFDEEASWNWNDEPEDYKFVLFPHDHDELSDIASPSTPPTSPIIPQQSTSSSFASSSEGPR
GMRSLRDIYDETEELSQSFNNLTLFCLFGDSELLNFEEALQNDKWKIAMNEEIKAIKKNDT

Cmc09g0245631 (gene) of Melon (Charmono) v1.1 genome