CuGenDBv2

Gene ID	Cmc09g0245871
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr09:9390784..9391461
RNA-Seq Expression	Cmc09g0245871
Synteny	Cmc09g0245871
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0018130 - heterocycle biosynthetic process (biological process) GO:0044271 - cellular nitrogen compound biosynthetic process (biological process) GO:1901362 - organic cyclic compound biosynthetic process (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016491 - oxidoreductase activity (molecular function) GO:0016779 - nucleotidyltransferase activity (molecular function) GO:0016829 - lyase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032875.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.5e-94

90.59

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Query:  GRKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLELRKVEIQEVRVEIPSSITSSQVV
        GRKPSLRHL+VWGCQAEV+IYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVE GNVRFIENDIISGSLE RKVEIQEVRVEIPSSITSSQVV
Subjt:  GRKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLELRKVEIQEVRVEIPSSITSSQVV

Query:  VPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDPVSFSQASKRDNSTKWLDAMKEELKSMND
        VPVVV SVNNPQEQQIN QTPHNDIVTNEPVTEGPQEIEL      RRS I DDYLVYLHE EFDLSID+DPVSFSQA K DNST WLDAMKEELKSMND
Subjt:  VPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDPVSFSQASKRDNSTKWLDAMKEELKSMND

Query:  NE
        NE
Subjt:  NE

KAA0035715.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.0e-107

89.13

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Query:  MYALRTAQYLLNRIPSKSVPKTPFELWTGRKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDII
        MYALRTAQYLLNR+PSKSVPKTPFELWTGRKPSLRHL+VWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCP HSTRIVETGNVRFIENDI 
Subjt:  MYALRTAQYLLNRIPSKSVPKTPFELWTGRKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDII

Query:  SGSLELRKVEIQEVRVEIPSSITSSQVVVPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDP
        SGSLE +KVEIQEVRVEIPSSITSSQVVVP VV+SVNNPQEQQINGQTPHNDIVTNE V   PQEIEL      RRS I DDYLVYLHE EFDLSIDNDP
Subjt:  SGSLELRKVEIQEVRVEIPSSITSSQVVVPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDP

Query:  VSFSQASKRDNSTKWLDAMKEELKSMNDNE
        VSFSQA K DNSTKWLDAMK+ELKS+NDNE
Subjt:  VSFSQASKRDNSTKWLDAMKEELKSMNDNE

KAA0052755.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.3e-95

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Query:  AQYLLNRIPSKSVPKTPFELWTG-RKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLE
        AQY +   P  ++P TP +     RKPSLRHLYVWGCQAE RIYNPHEKK DSRTTSGFFIGY EKSKGYRFYCPNHSTRIVETGNVRFIENDII+GSLE
Subjt:  AQYLLNRIPSKSVPKTPFELWTG-RKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLE

Query:  LRKVEIQEVRVEIPSSITSSQVVVPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDPVSFSQ
         RKVEIQEVRVEIPSSITSSQ+VVPVVV+SVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL      RRS I DDYLVYLHE EFDLSIDNDPVSFSQ
Subjt:  LRKVEIQEVRVEIPSSITSSQVVVPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDPVSFSQ

Query:  ASKRDNSTKWLDAMKEELKSMNDNE
        A K +NSTKWLDAMKEELKSMNDNE
Subjt:  ASKRDNSTKWLDAMKEELKSMNDNE

KAA0061857.1 copia-like pol polyprotein [Cucumis melo var. makuwa]

9.6e-94

90.1

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Query:  GRKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLELRKVEIQEVRVEIPSSITSSQVV
        GRKPSLRHL++WGCQAEVRIYNPHEKKLDSRTTS FFIGY EKSK YRFYCPNHSTRIVETGNVRFIENDIISGSLELRKVEIQEVRVEIPSSITSSQVV
Subjt:  GRKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLELRKVEIQEVRVEIPSSITSSQVV

Query:  VPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDPVSFSQASKRDNSTKWLDAMKEELKSMND
        VPV+V+SVNNPQE QINGQTPHNDIVTNEPVTEGPQEIEL      RR  I DDYLVYLHE EFDLSIDNDPVSFSQA K DNSTKWLDAMKEELKSMND
Subjt:  VPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDPVSFSQASKRDNSTKWLDAMKEELKSMND

Query:  NE
        NE
Subjt:  NE

TYK04201.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.5e-96

84.44

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Query:  AQYLLNRIPSKSVPKTPFELWTG-RKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLE
        AQY +   P  ++P TP +     RKPSLRHLYVWGCQAE RIYNPHEKK DSRTTSGFFIGY EKSKGYRFYCPNHSTRIVETGNVRFIENDII+GSLE
Subjt:  AQYLLNRIPSKSVPKTPFELWTG-RKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLE

Query:  LRKVEIQEVRVEIPSSITSSQVVVPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDPVSFSQ
         RKVEIQEVRVEIPSSITSSQ+VVPVVV+SVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL      RRS I DDYLVYLHE EFDLSIDNDPVSFSQ
Subjt:  LRKVEIQEVRVEIPSSITSSQVVVPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDPVSFSQ

Query:  ASKRDNSTKWLDAMKEELKSMNDNE
        A K DNSTKWLDAMKEELKSMNDNE
Subjt:  ASKRDNSTKWLDAMKEELKSMNDNE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SUJ2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-94

90.59

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Query:  GRKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLELRKVEIQEVRVEIPSSITSSQVV
        GRKPSLRHL+VWGCQAEV+IYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVE GNVRFIENDIISGSLE RKVEIQEVRVEIPSSITSSQVV
Subjt:  GRKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLELRKVEIQEVRVEIPSSITSSQVV

Query:  VPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDPVSFSQASKRDNSTKWLDAMKEELKSMND
        VPVVV SVNNPQEQQIN QTPHNDIVTNEPVTEGPQEIEL      RRS I DDYLVYLHE EFDLSID+DPVSFSQA K DNST WLDAMKEELKSMND
Subjt:  VPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDPVSFSQASKRDNSTKWLDAMKEELKSMND

Query:  NE
        NE
Subjt:  NE

A0A5A7UG95 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.5e-96

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Query:  AQYLLNRIPSKSVPKTPFELWTG-RKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLE
        AQY +   P  ++P TP +     RKPSLRHLYVWGCQAE RIYNPHEKK DSRTTSGFFIGY EKSKGYRFYCPNHSTRIVETGNVRFIENDII+GSLE
Subjt:  AQYLLNRIPSKSVPKTPFELWTG-RKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLE

Query:  LRKVEIQEVRVEIPSSITSSQVVVPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDPVSFSQ
         RKVEIQEVRVEIPSSITSSQ+VVPVVV+SVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL      RRS I DDYLVYLHE EFDLSIDNDPVSFSQ
Subjt:  LRKVEIQEVRVEIPSSITSSQVVVPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDPVSFSQ

Query:  ASKRDNSTKWLDAMKEELKSMNDNE
        A K +NSTKWLDAMKEELKSMNDNE
Subjt:  ASKRDNSTKWLDAMKEELKSMNDNE

A0A5A7V4M3 Copia-like pol polyprotein

4.7e-94

90.1

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Query:  GRKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLELRKVEIQEVRVEIPSSITSSQVV
        GRKPSLRHL++WGCQAEVRIYNPHEKKLDSRTTS FFIGY EKSK YRFYCPNHSTRIVETGNVRFIENDIISGSLELRKVEIQEVRVEIPSSITSSQVV
Subjt:  GRKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLELRKVEIQEVRVEIPSSITSSQVV

Query:  VPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDPVSFSQASKRDNSTKWLDAMKEELKSMND
        VPV+V+SVNNPQE QINGQTPHNDIVTNEPVTEGPQEIEL      RR  I DDYLVYLHE EFDLSIDNDPVSFSQA K DNSTKWLDAMKEELKSMND
Subjt:  VPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDPVSFSQASKRDNSTKWLDAMKEELKSMND

Query:  NE
        NE
Subjt:  NE

A0A5D3BWW5 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.7e-96

84.44

Show/hide

Query:  AQYLLNRIPSKSVPKTPFELWTG-RKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLE
        AQY +   P  ++P TP +     RKPSLRHLYVWGCQAE RIYNPHEKK DSRTTSGFFIGY EKSKGYRFYCPNHSTRIVETGNVRFIENDII+GSLE
Subjt:  AQYLLNRIPSKSVPKTPFELWTG-RKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLE

Query:  LRKVEIQEVRVEIPSSITSSQVVVPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDPVSFSQ
         RKVEIQEVRVEIPSSITSSQ+VVPVVV+SVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL      RRS I DDYLVYLHE EFDLSIDNDPVSFSQ
Subjt:  LRKVEIQEVRVEIPSSITSSQVVVPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDPVSFSQ

Query:  ASKRDNSTKWLDAMKEELKSMNDNE
        A K DNSTKWLDAMKEELKSMNDNE
Subjt:  ASKRDNSTKWLDAMKEELKSMNDNE

A0A5D3E5G1 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.7e-108

89.13

Show/hide

Query:  MYALRTAQYLLNRIPSKSVPKTPFELWTGRKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDII
        MYALRTAQYLLNR+PSKSVPKTPFELWTGRKPSLRHL+VWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCP HSTRIVETGNVRFIENDI 
Subjt:  MYALRTAQYLLNRIPSKSVPKTPFELWTGRKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDII

Query:  SGSLELRKVEIQEVRVEIPSSITSSQVVVPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDP
        SGSLE +KVEIQEVRVEIPSSITSSQVVVP VV+SVNNPQEQQINGQTPHNDIVTNE V   PQEIEL      RRS I DDYLVYLHE EFDLSIDNDP
Subjt:  SGSLELRKVEIQEVRVEIPSSITSSQVVVPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIEL------RRSTIFDDYLVYLHELEFDLSIDNDP

Query:  VSFSQASKRDNSTKWLDAMKEELKSMNDNE
        VSFSQA K DNSTKWLDAMK+ELKS+NDNE
Subjt:  VSFSQASKRDNSTKWLDAMKEELKSMNDNE

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

5.8e-09

43.48

Show/hide

Query:  ALRTAQYLLNRIPSKSV---PKTPFELWTGRKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGY
        A+ TA YL+NRIPS+++    KTP+E+W  +KP L+HL V+G    V I N  + K D ++    F+GY
Subjt:  ALRTAQYLLNRIPSKSV---PKTPFELWTGRKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGY

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.6e-12

26.05

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Query:  ALRTAQYLLNRIPSKSVP-KTPFELWTGRKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIIS
        A++TA YL+NR PS  +  + P  +WT ++ S  HL V+GC+A   +      KLD ++    FIGY ++  GYR + P    +++ + +V F E+++ +
Subjt:  ALRTAQYLLNRIPSKSVP-KTPFELWTGRKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIIS

Query:  GSLELRKVEIQEVRVEIPSSITSSQVVVPVVVNSVNNPQ----EQQINGQTPHNDIVTNEPVTEGPQEIE-----------LRRSTIFDDYLVYLHELEF
         +         ++  ++ + I  + V +P   N+  + +    E    G+ P   I   E + EG +E+E           LRRS             E+
Subjt:  GSLELRKVEIQEVRVEIPSSITSSQVVVPVVVNSVNNPQ----EQQINGQTPHNDIVTNEPVTEGPQEIE-----------LRRSTIFDDYLVYLHELEF

Query:  DL-SIDNDPVSFSQASKRDNSTKWLDAMKEELKSMNDN
         L S D +P S  +        + + AM+EE++S+  N
Subjt:  DL-SIDNDPVSFSQASKRDNSTKWLDAMKEELKSMNDN

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTATGCATTAAGAACCGCTCAATATTTATTAAATAGGATTCCTAGTAAGTCAGTTCCAAAGACACCTTTTGAACTGTGGACAGGAAGGAAACCTAGTTTAAGGCACCT
ATATGTTTGGGGTTGTCAAGCGGAAGTAAGAATTTATAATCCACATGAAAAGAAACTGGATTCAAGAACAACCAGTGGTTTCTTCATTGGTTATCCAGAAAAATCAAAAG
GGTATAGATTTTATTGTCCTAACCACAGTACGAGAATAGTTGAAACTGGAAATGTAAGGTTCATTGAGAATGACATAATTAGTGGGAGTTTAGAACTGCGAAAAGTGGAA
ATTCAAGAAGTTAGGGTGGAAATTCCTTCATCTATAACTTCTTCTCAAGTTGTTGTTCCTGTAGTTGTTAACTCTGTTAACAATCCACAAGAACAACAAATTAATGGTCA
AACACCACATAATGATATTGTAACAAATGAACCTGTAACTGAGGGACCACAGGAAATAGAATTAAGAAGATCAACTATTTTTGATGACTATTTGGTTTATTTGCATGAGT
TAGAATTTGACTTAAGCATTGATAATGATCCGGTTTCATTTTCACAAGCCAGTAAAAGAGATAATTCTACCAAATGGTTAGATGCCATGAAAGAAGAGTTAAAATCTATG
AATGATAATGAAGCCTGA

mRNA sequence

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Protein sequence

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MYALRTAQYLLNRIPSKSVPKTPFELWTGRKPSLRHLYVWGCQAEVRIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLELRKVE
IQEVRVEIPSSITSSQVVVPVVVNSVNNPQEQQINGQTPHNDIVTNEPVTEGPQEIELRRSTIFDDYLVYLHELEFDLSIDNDPVSFSQASKRDNSTKWLDAMKEELKSM
NDNEA

Cmc09g0245871 (gene) of Melon (Charmono) v1.1 genome