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Cmc09g0245911 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0245911
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationCMiso1.1chr09:9417111..9417530
RNA-Seq ExpressionCmc09g0245911
SyntenyCmc09g0245911
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045165.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.2e-5588.1Show/hide
Query:  MEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKPKKPHLEAVRRILRY
        MEYSEKGLFLGQQKYV DLLQKYG+SD KPISTPM+V KKFCMHEDKDLADPTMYRQLVGSLIYLTLTR DISYSVRV+S YMQKPKKPHLE VRRILRY
Subjt:  MEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKPKKPHLEAVRRILRY

Query:  LKG-TEYGLLYKKGQDCKLEGFCDAD
        L+G TEY +LYKKGQDCKLE FCDA+
Subjt:  LKG-TEYGLLYKKGQDCKLEGFCDAD

KAA0046986.1 Integrase, catalytic core [Cucumis melo var. makuwa]1.1e-5587.02Show/hide
Query:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP
        MK+LGELKHFLGLEMEYSEKGLFLGQQKYV DLLQKYG+SD KPIS PMKV K+FCMHE KDLADPTMY +LVGSLIYLTLTRPDISYSV VVS YMQ  
Subjt:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP

Query:  KKPHLEAVRRILRYLKG-TEYGLLYKKGQDC
        KKPHLEAVRRILRYL+G TEY LLYKKGQDC
Subjt:  KKPHLEAVRRILRYLKG-TEYGLLYKKGQDC

XP_015866561.1 uncharacterized protein LOC107404132 [Ziziphus jujuba]4.3e-5275Show/hide
Query:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP
        MKELGELKHFLG+E++ +EKGLFLGQQKY  +LLQK+GM DYKPISTPM+V  K   +E KDL D TMY+QLVGSLIYLTLTRPDIS++V VVS YMQ P
Subjt:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP

Query:  KKPHLEAVRRILRYLKGT-EYGLLYKKGQDCKLEGFCDAD
        KKPHLEAVRRILRY+KGT   GLLYK+G++CKL G+CDAD
Subjt:  KKPHLEAVRRILRYLKGT-EYGLLYKKGQDCKLEGFCDAD

XP_016901808.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]1.5e-5285.83Show/hide
Query:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP
        MKELGELK+FLGLEMEYSEKG FLGQQKY+ DLLQKYG++D KPISTPM+V KKF MHE KD A+PTMYRQLVGSLIYLTLTRPDISYSV V+S YMQKP
Subjt:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP

Query:  KKPHLEAVRRILRYLKG-TEYGLLYKK
        KKPHLEAVRRILRYL+G TEYGLLYKK
Subjt:  KKPHLEAVRRILRYLKG-TEYGLLYKK

XP_016903340.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]1.3e-6189.29Show/hide
Query:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP
        MKELGELKHFLGLEMEYSEKGLFLGQQKYV DLLQKYGMSD KPIST M+V KKFC HE KDLA+PTMY QLVGSLIYLTLTR DISYSVRVVS YMQK 
Subjt:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP

Query:  KKPHLEAVRRILRYLKG-TEYGLLYKKGQDCKLEGFCDAD
        KKPHLEAVRRILRYL+G TEYGLLYKK QDCKLEGFCDAD
Subjt:  KKPHLEAVRRILRYLKG-TEYGLLYKKGQDCKLEGFCDAD

TrEMBL top hitse value%identityAlignment
A0A1S4E0Q5 uncharacterized mitochondrial protein AtMg00810-like7.2e-5385.83Show/hide
Query:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP
        MKELGELK+FLGLEMEYSEKG FLGQQKY+ DLLQKYG++D KPISTPM+V KKF MHE KD A+PTMYRQLVGSLIYLTLTRPDISYSV V+S YMQKP
Subjt:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP

Query:  KKPHLEAVRRILRYLKG-TEYGLLYKK
        KKPHLEAVRRILRYL+G TEYGLLYKK
Subjt:  KKPHLEAVRRILRYLKG-TEYGLLYKK

A0A1S4E5T6 uncharacterized mitochondrial protein AtMg00810-like6.5e-6289.29Show/hide
Query:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP
        MKELGELKHFLGLEMEYSEKGLFLGQQKYV DLLQKYGMSD KPIST M+V KKFC HE KDLA+PTMY QLVGSLIYLTLTR DISYSVRVVS YMQK 
Subjt:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP

Query:  KKPHLEAVRRILRYLKG-TEYGLLYKKGQDCKLEGFCDAD
        KKPHLEAVRRILRYL+G TEYGLLYKK QDCKLEGFCDAD
Subjt:  KKPHLEAVRRILRYLKG-TEYGLLYKKGQDCKLEGFCDAD

A0A5A7T3Y0 Putative mitochondrial protein6.5e-6289.29Show/hide
Query:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP
        MKELGELKHFLGLEMEYSEKGLFLGQQKYV DLLQKYGMSD KPIST M+V KKFC HE KDLA+PTMY QLVGSLIYLTLTR DISYSVRVVS YMQK 
Subjt:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP

Query:  KKPHLEAVRRILRYLKG-TEYGLLYKKGQDCKLEGFCDAD
        KKPHLEAVRRILRYL+G TEYGLLYKK QDCKLEGFCDAD
Subjt:  KKPHLEAVRRILRYLKG-TEYGLLYKKGQDCKLEGFCDAD

A0A5A7TUW3 Putative mitochondrial protein1.5e-5588.1Show/hide
Query:  MEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKPKKPHLEAVRRILRY
        MEYSEKGLFLGQQKYV DLLQKYG+SD KPISTPM+V KKFCMHEDKDLADPTMYRQLVGSLIYLTLTR DISYSVRV+S YMQKPKKPHLE VRRILRY
Subjt:  MEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKPKKPHLEAVRRILRY

Query:  LKG-TEYGLLYKKGQDCKLEGFCDAD
        L+G TEY +LYKKGQDCKLE FCDA+
Subjt:  LKG-TEYGLLYKKGQDCKLEGFCDAD

A0A5A7TYD2 Integrase, catalytic core5.3e-5687.02Show/hide
Query:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP
        MK+LGELKHFLGLEMEYSEKGLFLGQQKYV DLLQKYG+SD KPIS PMKV K+FCMHE KDLADPTMY +LVGSLIYLTLTRPDISYSV VVS YMQ  
Subjt:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP

Query:  KKPHLEAVRRILRYLKG-TEYGLLYKKGQDC
        KKPHLEAVRRILRYL+G TEY LLYKKGQDC
Subjt:  KKPHLEAVRRILRYLKG-TEYGLLYKKGQDC

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.2e-1836.11Show/hide
Query:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKF-CMHEDKDLADPTMYRQLVGSLIYLTL-TRPDISYSVRVVSGYMQ
        M +L E+KHF+G+ +E  E  ++L Q  YV  +L K+ M +   +STP+  K  +  ++ D+D   P   R L+G L+Y+ L TRPD++ +V ++S Y  
Subjt:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKF-CMHEDKDLADPTMYRQLVGSLIYLTL-TRPDISYSVRVVSGYMQ

Query:  KPKKPHLEAVRRILRYLKGT-EYGLLYKKGQ--DCKLEGFCDAD
        K      + ++R+LRYLKGT +  L++KK    + K+ G+ D+D
Subjt:  KPKKPHLEAVRRILRYLKGT-EYGLLYKKGQ--DCKLEGFCDAD

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-2141.22Show/hide
Query:  MKELGELKHFLGLEM--EYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTP----MKVKKKFC--MHEDKDLADPTMYRQLVGSLIY-LTLTRPDISYSVR
        MK+LG  +  LG+++  E + + L+L Q+KY+  +L+++ M + KP+STP    +K+ KK C    E+K       Y   VGSL+Y +  TRPDI+++V 
Subjt:  MKELGELKHFLGLEM--EYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTP----MKVKKKFC--MHEDKDLADPTMYRQLVGSLIY-LTLTRPDISYSVR

Query:  VVSGYMQKPKKPHLEAVRRILRYLKGTEYGLLYKKGQDCKLEGFCDAD
        VVS +++ P K H EAV+ ILRYL+GT    L   G D  L+G+ DAD
Subjt:  VVSGYMQKPKKPHLEAVRRILRYLKGTEYGLLYKKGQDCKLEGFCDAD

P92519 Uncharacterized mitochondrial protein AtMg008101.6e-2542.86Show/hide
Query:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP
        MK+LG + +FLG++++    GLFL Q KY   +L   GM D KP+STP+ +K    +   K   DP+ +R +VG+L YLTLTRPDISY+V +V   M +P
Subjt:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP

Query:  KKPHLEAVRRILRYLKGTEY-GLLYKKGQDCKLEGFCDAD
             + ++R+LRY+KGT + GL   K     ++ FCD+D
Subjt:  KKPHLEAVRRILRYLKGTEY-GLLYKKGQDCKLEGFCDAD

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.0e-2745.71Show/hide
Query:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP
        +K+  EL +FLG+E +    GL L Q++Y+ DLL +  M   KP++TPM    K  ++    L DPT YR +VGSL YL  TRPDISY+V  +S +M  P
Subjt:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP

Query:  KKPHLEAVRRILRYLKGT-EYGLLYKKGQDCKLEGFCDAD
         + HL+A++RILRYL GT  +G+  KKG    L  + DAD
Subjt:  KKPHLEAVRRILRYLKGT-EYGLLYKKGQDCKLEGFCDAD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.3e-2745Show/hide
Query:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP
        +KE  +L +FLG+E +   +GL L Q++Y  DLL +  M   KP++TPM    K  +H    L DPT YR +VGSL YL  TRPD+SY+V  +S YM  P
Subjt:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP

Query:  KKPHLEAVRRILRYLKGT-EYGLLYKKGQDCKLEGFCDAD
           H  A++R+LRYL GT ++G+  KKG    L  + DAD
Subjt:  KKPHLEAVRRILRYLKGT-EYGLLYKKGQDCKLEGFCDAD

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.8e-2441.73Show/hide
Query:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP
        +++LG LK+FLGLE+  S  G+ + Q+KY  DLL + G+   KP S PM     F  H   D  D   YR+L+G L+YL +TR DIS++V  +S + + P
Subjt:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP

Query:  KKPHLEAVRRILRYLKGT-EYGLLYKKGQDCKLEGFCDA
        +  H +AV +IL Y+KGT   GL Y    + +L+ F DA
Subjt:  KKPHLEAVRRILRYLKGT-EYGLLYKKGQDCKLEGFCDA

ATMG00240.1 Gag-Pol-related retrotransposon family protein2.0e-0737.5Show/hide
Query:  IYLTLTRPDISYSVRVVSGYMQKPKKPHLEAVRRILRYLKGT-EYGLLYKKGQDCKLEGFCDAD
        +YLT+TRPD++++V  +S +    +   ++AV ++L Y+KGT   GL Y    D +L+ F D+D
Subjt:  IYLTLTRPDISYSVRVVSGYMQKPKKPHLEAVRRILRYLKGT-EYGLLYKKGQDCKLEGFCDAD

ATMG00810.1 DNA/RNA polymerases superfamily protein1.1e-2642.86Show/hide
Query:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP
        MK+LG + +FLG++++    GLFL Q KY   +L   GM D KP+STP+ +K    +   K   DP+ +R +VG+L YLTLTRPDISY+V +V   M +P
Subjt:  MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKP

Query:  KKPHLEAVRRILRYLKGTEY-GLLYKKGQDCKLEGFCDAD
             + ++R+LRY+KGT + GL   K     ++ FCD+D
Subjt:  KKPHLEAVRRILRYLKGTEY-GLLYKKGQDCKLEGFCDAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAACTTGGAGAACTAAAGCACTTTCTTGGACTAGAGATGGAGTACTCAGAAAAAGGATTGTTTCTTGGACAACAAAAATATGTGAACGATCTTCTACAGAAGTA
TGGTATGAGTGACTACAAGCCAATATCTACACCAATGAAGGTTAAAAAAAAGTTCTGCATGCATGAAGACAAAGATCTTGCAGATCCAACAATGTACCGTCAGTTGGTAG
GTAGTTTGATCTACCTTACCTTAACAAGACCCGATATCTCATACTCTGTCAGAGTTGTAAGTGGTTACATGCAAAAACCGAAGAAGCCTCATCTTGAAGCAGTTCGGAGA
ATTTTAAGATATCTCAAAGGAACTGAATATGGCCTTTTATATAAGAAAGGGCAAGATTGCAAGTTAGAAGGCTTTTGTGATGCTGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAACTTGGAGAACTAAAGCACTTTCTTGGACTAGAGATGGAGTACTCAGAAAAAGGATTGTTTCTTGGACAACAAAAATATGTGAACGATCTTCTACAGAAGTA
TGGTATGAGTGACTACAAGCCAATATCTACACCAATGAAGGTTAAAAAAAAGTTCTGCATGCATGAAGACAAAGATCTTGCAGATCCAACAATGTACCGTCAGTTGGTAG
GTAGTTTGATCTACCTTACCTTAACAAGACCCGATATCTCATACTCTGTCAGAGTTGTAAGTGGTTACATGCAAAAACCGAAGAAGCCTCATCTTGAAGCAGTTCGGAGA
ATTTTAAGATATCTCAAAGGAACTGAATATGGCCTTTTATATAAGAAAGGGCAAGATTGCAAGTTAGAAGGCTTTTGTGATGCTGATTAA
Protein sequenceShow/hide protein sequence
MKELGELKHFLGLEMEYSEKGLFLGQQKYVNDLLQKYGMSDYKPISTPMKVKKKFCMHEDKDLADPTMYRQLVGSLIYLTLTRPDISYSVRVVSGYMQKPKKPHLEAVRR
ILRYLKGTEYGLLYKKGQDCKLEGFCDAD