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Cmc09g0246101 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0246101
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr09:9636710..9637012
RNA-Seq ExpressionCmc09g0246101
SyntenyCmc09g0246101
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046563.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]3.1e-3681.72Show/hide
Query:  MLRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKK
        +LRRHELYANRKKCSFGK RVEYLGH+IS NG EVDPEKIRSIADWPKPTN+RETRGFL LTEYY RFVHQYGAI AP T LLKKG     K+
Subjt:  MLRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKK

KAA0048104.1 reverse transcriptase [Cucumis melo var. makuwa]9.4e-3376.4Show/hide
Query:  MLRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLN
        +LR+HEL+ANRKKCSFG  RVEYLGH+IS  GVEVDP+KI++IADWPKPTNVRETRGFL LT YY RFVH YGA+  P TQLLKKG  N
Subjt:  MLRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLN

KAA0066613.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-4596.77Show/hide
Query:  YANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKKLMRHLTS
        Y  RKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKKLMRHLT+
Subjt:  YANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKKLMRHLTS

TYJ96446.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]9.4e-3376.4Show/hide
Query:  MLRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLN
        +LR+HEL+ANRKKCSFG  RVEYLGH+IS  GVEVDP+KI++IADWPKPTNVRETRGFL LT YY RFVH YGA+  P TQLLKKG  N
Subjt:  MLRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLN

TYK28696.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]5.3e-3681.72Show/hide
Query:  MLRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKK
        +LRRHELYANRKKCSFGK RVEYLGH+IS NG EVDPEKIRSIADWPKPTN+RETRGFL LTEYY RFVHQYGAI AP T LLKKG     K+
Subjt:  MLRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKK

TrEMBL top hitse value%identityAlignment
A0A5A7TSP5 Transposon Tf2-9 polyprotein1.5e-3681.72Show/hide
Query:  MLRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKK
        +LRRHELYANRKKCSFGK RVEYLGH+IS NG EVDPEKIRSIADWPKPTN+RETRGFL LTEYY RFVHQYGAI AP T LLKKG     K+
Subjt:  MLRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKK

A0A5A7TYJ6 Reverse transcriptase4.5e-3376.4Show/hide
Query:  MLRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLN
        +LR+HEL+ANRKKCSFG  RVEYLGH+IS  GVEVDP+KI++IADWPKPTNVRETRGFL LT YY RFVH YGA+  P TQLLKKG  N
Subjt:  MLRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLN

A0A5A7VEZ7 Reverse transcriptase6.1e-4696.77Show/hide
Query:  YANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKKLMRHLTS
        Y  RKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKKLMRHLT+
Subjt:  YANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKKLMRHLTS

A0A5D3BC12 Transposon Tf2-6 polyprotein4.5e-3376.4Show/hide
Query:  MLRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLN
        +LR+HEL+ANRKKCSFG  RVEYLGH+IS  GVEVDP+KI++IADWPKPTNVRETRGFL LT YY RFVH YGA+  P TQLLKKG  N
Subjt:  MLRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLN

A0A5D3DYB0 Transposon Tf2-9 polyprotein2.6e-3681.72Show/hide
Query:  MLRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKK
        +LRRHELYANRKKCSFGK RVEYLGH+IS NG EVDPEKIRSIADWPKPTN+RETRGFL LTEYY RFVHQYGAI AP T LLKKG     K+
Subjt:  MLRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKK

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.3e-1239.29Show/hide
Query:  LRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKK
        L +  L     KC F K    +LGHV++ +G++ +PEKI +I  +P PT  +E + FL LT YY +F+  +  I  P T+ LKK
Subjt:  LRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKK

P10401 Retrovirus-related Pol polyprotein from transposon gypsy2.5e-1240.7Show/hide
Query:  NRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKKLM
        +++K  F K  VEYLG ++S +G + DPEK+++I ++P+P  V + R FL L  YY  F+  + AI  P T +L KG+   V K M
Subjt:  NRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKKLM

P20825 Retrovirus-related Pol polyprotein from transposon 2971.5e-1239.02Show/hide
Query:  KCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKKL
        KC F K    +LGH+++ +G++ +P K+++I  +P PT  +E R FL LT YY +F+  Y  I  P T  LKK      +KL
Subjt:  KCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKKL

P92523 Uncharacterized mitochondrial protein AtMg008604.1e-2355.17Show/hide
Query:  RHELYANRKKCSFGKTRVEYLG--HVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDL
        +H+ YANRKKC+FG+ ++ YLG  H+ISG GV  DP K+ ++  WP+P N  E RGFL LT YY RFV  YG I  P T+LLKK  L
Subjt:  RHELYANRKKCSFGKTRVEYLG--HVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.7e-1437.35Show/hide
Query:  LRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLK
        L +  L  N +K  F  T+VE+LG++++ +G++ DP+K+R+I++ P PT+V+E + FL +T YY +F+  Y  +  P T L +
Subjt:  LRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLK

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein2.9e-2455.17Show/hide
Query:  RHELYANRKKCSFGKTRVEYLG--HVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDL
        +H+ YANRKKC+FG+ ++ YLG  H+ISG GV  DP K+ ++  WP+P N  E RGFL LT YY RFV  YG I  P T+LLKK  L
Subjt:  RHELYANRKKCSFGKTRVEYLG--HVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCGAAGACATGAATTGTATGCTAACAGAAAGAAGTGCAGCTTTGGTAAGACAAGAGTGGAATATTTAGGGCATGTCATATCTGGAAATGGTGTGGAAGTGGATCC
AGAAAAAATTCGATCTATTGCTGATTGGCCCAAACCAACAAATGTGCGAGAAACACGGGGATTCCTCAAATTAACAGAGTATTACCATAGGTTTGTGCATCAGTATGGAG
CTATTACTGCTCCTCGCACTCAGCTGCTTAAAAAAGGGGATTTAAATGGAGTGAAGAAGTTGATGAGGCATTTGACAAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCGAAGACATGAATTGTATGCTAACAGAAAGAAGTGCAGCTTTGGTAAGACAAGAGTGGAATATTTAGGGCATGTCATATCTGGAAATGGTGTGGAAGTGGATCC
AGAAAAAATTCGATCTATTGCTGATTGGCCCAAACCAACAAATGTGCGAGAAACACGGGGATTCCTCAAATTAACAGAGTATTACCATAGGTTTGTGCATCAGTATGGAG
CTATTACTGCTCCTCGCACTCAGCTGCTTAAAAAAGGGGATTTAAATGGAGTGAAGAAGTTGATGAGGCATTTGACAAGTTAA
Protein sequenceShow/hide protein sequence
MLRRHELYANRKKCSFGKTRVEYLGHVISGNGVEVDPEKIRSIADWPKPTNVRETRGFLKLTEYYHRFVHQYGAITAPRTQLLKKGDLNGVKKLMRHLTS