| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0046133.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 4.9e-97 | 88.12 | Show/hide |
Query: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
MRLCIDYRELNKV V+N YPLPRIDDLFDQLQ ATVF KIDLRSGYHQLRIRDSDIPKTAFR R+ HYEFIVMSF LTNALA+FMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
Query: IVFIDDILVYSKTEAEHEEHLHQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRITSPLTQLTRKGTLFVWNPACET
IVFIDDIL+YSKTEAEHEEHLHQVSFLGHVVSS+GVSVDPAKIE VT+WPRP TVSE+ SFLGLAGYYRRF+EDF RI SPLTQLTRKGT FVW+PACE+
Subjt: IVFIDDILVYSKTEAEHEEHLHQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRITSPLTQLTRKGTLFVWNPACET
Query: SF
SF
Subjt: SF
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| KAA0046150.1 pol protein [Cucumis melo var. makuwa] | 8.7e-94 | 85.15 | Show/hide |
Query: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
MRLCIDYRELNKV V+N YPLPRIDDLFDQLQ ATVF KIDLRS YHQLRIRDSDIPKTAFR RYGHYEF+VMSF LTNA +FMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
Query: IVFIDDILVYSKTEAEHEEHLHQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRITSPLTQLTRKGTLFVWNPACET
IVFIDDIL+YSKTEAEHEEHLHQV+FL HVV S+GVSVDPAKIEAVT+WPRP TVSE+ SFLGLAGYYRRF+EDF RI +PLTQLTRKGT FVW+PA E+
Subjt: IVFIDDILVYSKTEAEHEEHLHQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRITSPLTQLTRKGTLFVWNPACET
Query: SF
SF
Subjt: SF
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| KAA0050727.1 pol protein [Cucumis melo var. makuwa] | 2.1e-95 | 80 | Show/hide |
Query: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
MRLCIDYRELNK+ V+N YPLPRIDDLFDQLQEATVF KIDLRSGYHQLRIRDSDIPKTAFR RYGHYEFIVMSF LTNALA+FMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
Query: IVFIDDILVYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFR
IVFIDDIL+YSKTEAEHEEHLHQ V+FLGHVVSS+GVSVDPAKIEAVT+WPRP TV+E+ SFLGLAGYYRRF+EDF R
Subjt: IVFIDDILVYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFR
Query: ITSPLTQLTRKGTLFVWNPACETSF
ITSPLTQLTRKGT FVW+PACE+SF
Subjt: ITSPLTQLTRKGTLFVWNPACETSF
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| TYK21327.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 5.1e-94 | 85.64 | Show/hide |
Query: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
MRLCIDYRELNKV V+N YPLP+IDDLFDQLQ ATVF KIDLRSGYHQLRIRDSDIPKTAFR RYGHYEFIVMSF LTNA A+FMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
Query: IVFIDDILVYSKTEAEHEEHLHQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRITSPLTQLTRKGTLFVWNPACET
IVFIDDIL+YSKTEAEHEEHLHQV+FLGHVVSS+GV VDP+KIEAVT+WP+P VSE+ SFLGLAGYYRRF+EDF RI SPLTQLT KGT FVW+PACE+
Subjt: IVFIDDILVYSKTEAEHEEHLHQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRITSPLTQLTRKGTLFVWNPACET
Query: SF
SF
Subjt: SF
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| TYK21579.1 pol protein [Cucumis melo var. makuwa] | 8.7e-94 | 79.11 | Show/hide |
Query: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
MRLCI+YRELNKV V+N+YPLP+IDDLF QLQ ATVF KIDLRSGY QLR+RDSDIPKTAFR RYGHYEFIVMSFSLTNA A+FMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
Query: IVFIDDILVYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFR
IVFIDDIL+YSKTEAEHEEHLHQ VSFLGHVVSS+GVSVDPAKIEAVT+WPRP TVSE+HSFLGLAGYYRRF+EDF R
Subjt: IVFIDDILVYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFR
Query: ITSPLTQLTRKGTLFVWNPACETSF
ITSPLTQLTRKGT FVW+PACE+SF
Subjt: ITSPLTQLTRKGTLFVWNPACETSF
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7TRD6 Ty3-gypsy retrotransposon protein | 2.4e-97 | 88.12 | Show/hide |
Query: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
MRLCIDYRELNKV V+N YPLPRIDDLFDQLQ ATVF KIDLRSGYHQLRIRDSDIPKTAFR R+ HYEFIVMSF LTNALA+FMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
Query: IVFIDDILVYSKTEAEHEEHLHQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRITSPLTQLTRKGTLFVWNPACET
IVFIDDIL+YSKTEAEHEEHLHQVSFLGHVVSS+GVSVDPAKIE VT+WPRP TVSE+ SFLGLAGYYRRF+EDF RI SPLTQLTRKGT FVW+PACE+
Subjt: IVFIDDILVYSKTEAEHEEHLHQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRITSPLTQLTRKGTLFVWNPACET
Query: SF
SF
Subjt: SF
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| A0A5A7TSL8 Pol protein | 4.2e-94 | 85.15 | Show/hide |
Query: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
MRLCIDYRELNKV V+N YPLPRIDDLFDQLQ ATVF KIDLRS YHQLRIRDSDIPKTAFR RYGHYEF+VMSF LTNA +FMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
Query: IVFIDDILVYSKTEAEHEEHLHQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRITSPLTQLTRKGTLFVWNPACET
IVFIDDIL+YSKTEAEHEEHLHQV+FL HVV S+GVSVDPAKIEAVT+WPRP TVSE+ SFLGLAGYYRRF+EDF RI +PLTQLTRKGT FVW+PA E+
Subjt: IVFIDDILVYSKTEAEHEEHLHQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRITSPLTQLTRKGTLFVWNPACET
Query: SF
SF
Subjt: SF
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| A0A5D3B768 Pol protein | 1.0e-95 | 80 | Show/hide |
Query: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
MRLCIDYRELNK+ V+N YPLPRIDDLFDQLQEATVF KIDLRSGYHQLRIRDSDIPKTAFR RYGHYEFIVMSF LTNALA+FMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
Query: IVFIDDILVYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFR
IVFIDDIL+YSKTEAEHEEHLHQ V+FLGHVVSS+GVSVDPAKIEAVT+WPRP TV+E+ SFLGLAGYYRRF+EDF R
Subjt: IVFIDDILVYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFR
Query: ITSPLTQLTRKGTLFVWNPACETSF
ITSPLTQLTRKGT FVW+PACE+SF
Subjt: ITSPLTQLTRKGTLFVWNPACETSF
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| A0A5D3DCG0 Ty3-gypsy retrotransposon protein | 2.5e-94 | 85.64 | Show/hide |
Query: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
MRLCIDYRELNKV V+N YPLP+IDDLFDQLQ ATVF KIDLRSGYHQLRIRDSDIPKTAFR RYGHYEFIVMSF LTNA A+FMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
Query: IVFIDDILVYSKTEAEHEEHLHQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRITSPLTQLTRKGTLFVWNPACET
IVFIDDIL+YSKTEAEHEEHLHQV+FLGHVVSS+GV VDP+KIEAVT+WP+P VSE+ SFLGLAGYYRRF+EDF RI SPLTQLT KGT FVW+PACE+
Subjt: IVFIDDILVYSKTEAEHEEHLHQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRITSPLTQLTRKGTLFVWNPACET
Query: SF
SF
Subjt: SF
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| A0A5D3DE35 Pol protein | 4.2e-94 | 79.11 | Show/hide |
Query: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
MRLCI+YRELNKV V+N+YPLP+IDDLF QLQ ATVF KIDLRSGY QLR+RDSDIPKTAFR RYGHYEFIVMSFSLTNA A+FMDLMNRVFKDFLD+FV
Subjt: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
Query: IVFIDDILVYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFR
IVFIDDIL+YSKTEAEHEEHLHQ VSFLGHVVSS+GVSVDPAKIEAVT+WPRP TVSE+HSFLGLAGYYRRF+EDF R
Subjt: IVFIDDILVYSKTEAEHEEHLHQ-----------------------VSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFR
Query: ITSPLTQLTRKGTLFVWNPACETSF
ITSPLTQLTRKGT FVW+PACE+SF
Subjt: ITSPLTQLTRKGTLFVWNPACETSF
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04323 Retrovirus-related Pol polyprotein from transposon 17.6 | 3.8e-36 | 34.22 | Show/hide |
Query: RLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFVI
R+ IDYR+LN++ V + +P+P +D++ +L F IDL G+HQ+ + + KTAF ++GHYE++ M F L NA A F MN + + L+ +
Subjt: RLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFVI
Query: VFIDDILVYSKTEAEHEEHL-----------------------HQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRI
V++DDI+V+S + EH + L + +FLGHV++ G+ +P KIEA+ +P P E+ +FLGL GYYR+F+ +F I
Subjt: VFIDDILVYSKTEAEHEEHL-----------------------HQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRI
Query: TSPLTQLTRKG-TLFVWNPACETSF
P+T+ +K + NP +++F
Subjt: TSPLTQLTRKG-TLFVWNPACETSF
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| P0CT34 Transposon Tf2-1 polyprotein | 8.0e-34 | 33.79 | Show/hide |
Query: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
+R+ +DY+ LNK + N YPLP I+ L ++Q +T+F K+DL+S YH +R+R D K AFR G +E++VM + ++ A A F +N + + ++ V
Subjt: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
Query: IVFIDDILVYSKTEAEH-----------------------EEHLHQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFR
+ ++DDIL++SK+E+EH E H QV F+G+ +S KG + I+ V W +P E+ FLG Y R+F+ +
Subjt: IVFIDDILVYSKTEAEH-----------------------EEHLHQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFR
Query: ITSPLTQLTRKGTLFVWNP
+T PL L +K + W P
Subjt: ITSPLTQLTRKGTLFVWNP
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| P0CT41 Transposon Tf2-12 polyprotein | 8.0e-34 | 33.79 | Show/hide |
Query: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
+R+ +DY+ LNK + N YPLP I+ L ++Q +T+F K+DL+S YH +R+R D K AFR G +E++VM + ++ A A F +N + + ++ V
Subjt: MRLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFV
Query: IVFIDDILVYSKTEAEH-----------------------EEHLHQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFR
+ ++DDIL++SK+E+EH E H QV F+G+ +S KG + I+ V W +P E+ FLG Y R+F+ +
Subjt: IVFIDDILVYSKTEAEH-----------------------EEHLHQVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFR
Query: ITSPLTQLTRKGTLFVWNP
+T PL L +K + W P
Subjt: ITSPLTQLTRKGTLFVWNP
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| P20825 Retrovirus-related Pol polyprotein from transposon 297 | 6.5e-36 | 33.96 | Show/hide |
Query: RLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFVI
R+ IDYR+LN++ + + YP+P +D++ +L + F IDL G+HQ+ + + I KTAF + GHYE++ M F L NA A F MN + + L+ +
Subjt: RLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFVI
Query: VFIDDILVYSKTEAEHEEHLH-----------------------QVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRI
V++DDI+++S + EH + + +FLGH+V+ G+ +P K++A+ S+P P E+ +FLGL GYYR+F+ ++ I
Subjt: VFIDDILVYSKTEAEHEEHLH-----------------------QVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRI
Query: TSPLTQLTRKGT
P+T +K T
Subjt: TSPLTQLTRKGT
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| Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus | 3.8e-36 | 35.89 | Show/hide |
Query: RLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFVI
R+ +D++ LN V + + YP+P I+ L A F +DL SG+HQ+ +++SDIPKTAF G YEF+ + F L NA AIF +++ + ++ +
Subjt: RLCIDYRELNKVIVRNYYPLPRIDDLFDQLQEATVFLKIDLRSGYHQLRIRDSDIPKTAFRFRYGHYEFIVMSFSLTNALAIFMDLMNRVFKDFLDTFVI
Query: VFIDDILVYSKTEAEHEEHLH-----------------------QVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRI
V+IDDI+V+S+ H ++L QV FLG++V++ G+ DP K+ A++ P P +V E+ FLG+ YYR+F++D+ ++
Subjt: VFIDDILVYSKTEAEHEEHLH-----------------------QVSFLGHVVSSKGVSVDPAKIEAVTSWPRPFTVSEVHSFLGLAGYYRRFMEDFFRI
Query: TSPLTQLTR
PLT LTR
Subjt: TSPLTQLTR
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