; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0246411 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0246411
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr09:10312836..10313357
RNA-Seq ExpressionCmc09g0246411
SyntenyCmc09g0246411
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033652.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-7686.05Show/hide
Query:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR
        +LFVKKK GTLRLCIDYRQLNKV I NKYPLP IDD+FDQL GA LFSKIDLRSGYHQLKV+ES I+KTTF+TRY HYEFRVMPFGLTNA  IFMDLMNR
Subjt:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR

Query:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD
        IFHQYLDQFVIVF+DDILVY + R++HEEHLRIVLQ LRDKQLYAKFSKCE WL QVVFLGHVVSAKGVSVD
Subjt:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.3e-7684.88Show/hide
Query:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR
        +LFVKKK GTLRLCIDYRQLNKV I NKYPLP IDD+FDQL GATLFSKIDLRSGYHQLKV+ES I+KT FRTRY HYEFRVMPFGLTNA  +FMDLMNR
Subjt:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR

Query:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD
        IFH+YLDQFVIVF+DDILVY + R++HEEHLRIVLQ LR+KQLYAKFSKCE WL QVVFLGHVVSAKGVSVD
Subjt:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD

KAA0062270.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.3e-7684.88Show/hide
Query:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR
        +LFVKKK GTLRLCIDYRQLNKV I NKYPLP IDD+FDQL GATLFSKIDLRSGYHQLKV+ES I+KT FRTRY HYEFRVMPFGLTNA  +FMDLMNR
Subjt:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR

Query:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD
        IFH+YLDQFVIVF+DDILVY + R++HEEHLRIVLQ LR+KQLYAKFSKCE WL QVVFLGHVVSAKGVSVD
Subjt:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.3e-7684.88Show/hide
Query:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR
        +LFVKKK GTLRLCIDYRQLNKV I NKYPLP IDD+FDQL GATLFSKIDLRSGYHQLKV+ES I+KT FRTRY HYEFRVMPFGLTNA  +FMDLMNR
Subjt:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR

Query:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD
        IFH+YLDQFVIVF+DDILVY + R++HEEHLRIVLQ LR+KQLYAKFSKCE WL QVVFLGHVVSAKGVSVD
Subjt:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD

TYK22952.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-7786.63Show/hide
Query:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR
        +LFVKKK GTLRLCIDYRQLNKV I NKYPLP IDD+FDQL GATLFSKIDLRSGYHQLKV+ES I+KTTF+TRY HYEFRVMPFGLTNA  IFMDLMNR
Subjt:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR

Query:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD
        IFHQYLDQFVIVF+DDILVY + R++HEEHLRIVLQ LRDKQLYAKFSKCE WL QVVFLGHVVSAKGVSVD
Subjt:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD

TrEMBL top hitse value%identityAlignment
A0A5A7SR31 DNA/RNA polymerases superfamily protein5.2e-7786.05Show/hide
Query:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR
        +LFVKKK GTLRLCIDYRQLNKV I NKYPLP IDD+FDQL GA LFSKIDLRSGYHQLKV+ES I+KTTF+TRY HYEFRVMPFGLTNA  IFMDLMNR
Subjt:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR

Query:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD
        IFHQYLDQFVIVF+DDILVY + R++HEEHLRIVLQ LRDKQLYAKFSKCE WL QVVFLGHVVSAKGVSVD
Subjt:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD

A0A5A7T3K4 Reverse transcriptase2.6e-7684.88Show/hide
Query:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR
        +LFVKKK GTLRLCIDYRQLNKV I NKYPLP IDD+FDQL GATLFSKIDLRSGYHQLKV+ES I+KT FRTRY HYEFRVMPFGLTNA  +FMDLMNR
Subjt:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR

Query:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD
        IFH+YLDQFVIVF+DDILVY + R++HEEHLRIVLQ LR+KQLYAKFSKCE WL QVVFLGHVVSAKGVSVD
Subjt:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD

A0A5A7U819 Reverse transcriptase2.6e-7684.88Show/hide
Query:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR
        +LFVKKK GTLRLCIDYRQLNKV I NKYPLP IDD+FDQL GATLFSKIDLRSGYHQLKV+ES I+KT FRTRY HYEFRVMPFGLTNA  +FMDLMNR
Subjt:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR

Query:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD
        IFH+YLDQFVIVF+DDILVY + R++HEEHLRIVLQ LR+KQLYAKFSKCE WL QVVFLGHVVSAKGVSVD
Subjt:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD

A0A5A7VNK4 Reverse transcriptase2.6e-7684.88Show/hide
Query:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR
        +LFVKKK GTLRLCIDYRQLNKV I NKYPLP IDD+FDQL GATLFSKIDLRSGYHQLKV+ES I+KT FRTRY HYEFRVMPFGLTNA  +FMDLMNR
Subjt:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR

Query:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD
        IFH+YLDQFVIVF+DDILVY + R++HEEHLRIVLQ LR+KQLYAKFSKCE WL QVVFLGHVVSAKGVSVD
Subjt:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD

A0A5D3DHC6 Reverse transcriptase1.4e-7786.63Show/hide
Query:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR
        +LFVKKK GTLRLCIDYRQLNKV I NKYPLP IDD+FDQL GATLFSKIDLRSGYHQLKV+ES I+KTTF+TRY HYEFRVMPFGLTNA  IFMDLMNR
Subjt:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR

Query:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD
        IFHQYLDQFVIVF+DDILVY + R++HEEHLRIVLQ LRDKQLYAKFSKCE WL QVVFLGHVVSAKGVSVD
Subjt:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVD

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein3.0e-2938.1Show/hide
Query:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR
        ++FV KK GTLR+ +DY+ LNK +  N YPLP I+ +  ++ G+T+F+K+DL+S YH ++V++    K  FR     +E+ VMP+G++ A   F   +N 
Subjt:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR

Query:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKG
        I  +  +  V+ +MDDIL++      H +H++ VLQ L++  L    +KCE    QV F+G+ +S KG
Subjt:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKG

P0CT35 Transposon Tf2-2 polyprotein3.0e-2938.1Show/hide
Query:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR
        ++FV KK GTLR+ +DY+ LNK +  N YPLP I+ +  ++ G+T+F+K+DL+S YH ++V++    K  FR     +E+ VMP+G++ A   F   +N 
Subjt:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR

Query:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKG
        I  +  +  V+ +MDDIL++      H +H++ VLQ L++  L    +KCE    QV F+G+ +S KG
Subjt:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKG

P0CT36 Transposon Tf2-3 polyprotein3.0e-2938.1Show/hide
Query:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR
        ++FV KK GTLR+ +DY+ LNK +  N YPLP I+ +  ++ G+T+F+K+DL+S YH ++V++    K  FR     +E+ VMP+G++ A   F   +N 
Subjt:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR

Query:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKG
        I  +  +  V+ +MDDIL++      H +H++ VLQ L++  L    +KCE    QV F+G+ +S KG
Subjt:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKG

P0CT41 Transposon Tf2-12 polyprotein3.0e-2938.1Show/hide
Query:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR
        ++FV KK GTLR+ +DY+ LNK +  N YPLP I+ +  ++ G+T+F+K+DL+S YH ++V++    K  FR     +E+ VMP+G++ A   F   +N 
Subjt:  MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNR

Query:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKG
        I  +  +  V+ +MDDIL++      H +H++ VLQ L++  L    +KCE    QV F+G+ +S KG
Subjt:  IFHQYLDQFVIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKG

P31843 RNA-directed DNA polymerase homolog8.1e-3551.11Show/hide
Query:  TLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNRIFHQYLDQF
        +LR+CIDYR L KV I NKYP+P +DD+FD+L  AT F+K+DLRSGY Q+++ +    KTT  TRY  +EFRVMPFGLTNAL  F +LMN + ++YLD F
Subjt:  TLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNRIFHQYLDQF

Query:  VIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLY
        V+V++DD++VY I   +  EH++ +  +   K+++
Subjt:  VIVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATTTGTGAAAAAGAAATATGGTACCCTTAGATTATGTATTGACTATAGGCAGTTAAACAAGGTTATGATATGTAACAAGTATCCTTTACCATGCATCGATGACAT
ATTTGATCAGCTAATGGGGGCAACATTATTCTCTAAGATTGATTTAAGGTCAGGATACCACCAGTTGAAGGTTAAAGAATCGAAAATTTCTAAGACAACATTCAGAACGA
GGTATGAGCACTATGAGTTTCGAGTTATGCCATTCGGTTTAACGAATGCGCTAGTGATTTTCATGGATCTCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTGTG
ATCGTGTTCATGGATGATATACTAGTTTACTTGATTGGCAGGAAAGCCCATGAGGAACATCTAAGGATTGTTCTACAGATTCTACGTGATAAACAGCTGTACGCTAAGTT
TAGCAAATGTGAGTTATGGTTGGGACAAGTAGTATTCTTGGGACATGTAGTTTCAGCAAAAGGAGTTAGTGTTGATTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTATTTGTGAAAAAGAAATATGGTACCCTTAGATTATGTATTGACTATAGGCAGTTAAACAAGGTTATGATATGTAACAAGTATCCTTTACCATGCATCGATGACAT
ATTTGATCAGCTAATGGGGGCAACATTATTCTCTAAGATTGATTTAAGGTCAGGATACCACCAGTTGAAGGTTAAAGAATCGAAAATTTCTAAGACAACATTCAGAACGA
GGTATGAGCACTATGAGTTTCGAGTTATGCCATTCGGTTTAACGAATGCGCTAGTGATTTTCATGGATCTCATGAACAGGATCTTCCATCAGTATTTAGATCAGTTTGTG
ATCGTGTTCATGGATGATATACTAGTTTACTTGATTGGCAGGAAAGCCCATGAGGAACATCTAAGGATTGTTCTACAGATTCTACGTGATAAACAGCTGTACGCTAAGTT
TAGCAAATGTGAGTTATGGTTGGGACAAGTAGTATTCTTGGGACATGTAGTTTCAGCAAAAGGAGTTAGTGTTGATTCATAA
Protein sequenceShow/hide protein sequence
MLFVKKKYGTLRLCIDYRQLNKVMICNKYPLPCIDDIFDQLMGATLFSKIDLRSGYHQLKVKESKISKTTFRTRYEHYEFRVMPFGLTNALVIFMDLMNRIFHQYLDQFV
IVFMDDILVYLIGRKAHEEHLRIVLQILRDKQLYAKFSKCELWLGQVVFLGHVVSAKGVSVDS