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Cmc09g0246481 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0246481
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr09:10437357..10437662
RNA-Seq ExpressionCmc09g0246481
SyntenyCmc09g0246481
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047426.1 gag/pol protein [Cucumis melo var. makuwa]5.9e-51100Show/hide
Query:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV
        MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV
Subjt:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV

Query:  V
        V
Subjt:  V

KAA0050132.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-4592.08Show/hide
Query:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV
        MSNI YAYAVGSLMYAM C RPDICYSVGIVSRYQSNPG DHWT +KNILKYLRRTKDYMLVYGSKD+ILIGYTDSDFQTDKDARKST GSVFTLNGGAV
Subjt:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV

Query:  V
        V
Subjt:  V

KAA0062116.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-4492.08Show/hide
Query:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV
        MSNIPYA AVGSLMYAM C RPDICYSVGIV RYQSNPG DHWTTVKNILKYLRRTKDYMLVYGSKD+ILIGYTDSDFQTDKDARKST  SVFTLNGGAV
Subjt:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV

Query:  V
        V
Subjt:  V

TYK06386.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-4694.06Show/hide
Query:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV
        MSNIPYAYAVGSLMYAM C RPDICYSVGIVSRYQSNPG DHWT VKNILKYLRRTKDYMLVYGSKD+ILIGYTDSDFQTDKDARKST GSVFTLNGGAV
Subjt:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV

Query:  V
        V
Subjt:  V

TYK29682.1 gag/pol protein [Cucumis melo var. makuwa]5.4e-4490.1Show/hide
Query:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV
        MSNIPYA+AVGSLMYAM C RPDICY V IVSRYQSNPG DHWT VKNILKYLRRTKDYMLVYGSKD+IL GYTDSDFQTDKDARKST GSVFTLNGGAV
Subjt:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A5A7U2R8 Gag/pol protein6.2e-4692.08Show/hide
Query:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV
        MSNI YAYAVGSLMYAM C RPDICYSVGIVSRYQSNPG DHWT +KNILKYLRRTKDYMLVYGSKD+ILIGYTDSDFQTDKDARKST GSVFTLNGGAV
Subjt:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV

Query:  V
        V
Subjt:  V

A0A5A7V6Q6 Gag/pol protein6.8e-4592.08Show/hide
Query:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV
        MSNIPYA AVGSLMYAM C RPDICYSVGIV RYQSNPG DHWTTVKNILKYLRRTKDYMLVYGSKD+ILIGYTDSDFQTDKDARKST  SVFTLNGGAV
Subjt:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV

Query:  V
        V
Subjt:  V

A0A5D3BY87 Gag/pol protein2.9e-51100Show/hide
Query:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV
        MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV
Subjt:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV

Query:  V
        V
Subjt:  V

A0A5D3C7T2 Gag/pol protein7.3e-4794.06Show/hide
Query:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV
        MSNIPYAYAVGSLMYAM C RPDICYSVGIVSRYQSNPG DHWT VKNILKYLRRTKDYMLVYGSKD+ILIGYTDSDFQTDKDARKST GSVFTLNGGAV
Subjt:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV

Query:  V
        V
Subjt:  V

A0A5D3E173 Gag/pol protein2.6e-4490.1Show/hide
Query:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV
        MSNIPYA+AVGSLMYAM C RPDICY V IVSRYQSNPG DHWT VKNILKYLRRTKDYMLVYGSKD+IL GYTDSDFQTDKDARKST GSVFTLNGGAV
Subjt:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
P0CV72 Secreted RxLR effector protein 1614.0e-1842.57Show/hide
Query:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMI-LIGYTDSDFQTDKDARKSTLGSVFTLNGGA
        M N+PY  AVG++MY M   RPD+  +VG++S++ S+P   HW  +K +L+YL+ T+ Y L +       L+GY+D+D+  D ++R+ST G +F LNGG 
Subjt:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMI-LIGYTDSDFQTDKDARKSTLGSVFTLNGGA

Query:  V
        V
Subjt:  V

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-948.9e-2656Show/hide
Query:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV
        M+ +PY+ AVGSLMYAM C RPDI ++VG+VSR+  NPG +HW  VK IL+YLR T    L +G  D IL GYTD+D   D D RKS+ G +FT +GGA+
Subjt:  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV

P25600 Putative transposon Ty5-1 protein YCL074W1.2e-0634.02Show/hide
Query:  PYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGS-KDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV
        PY   VG L++  +  RPDI Y V ++SR+   P   H  + + +L+YL  T+   L Y S   + L  Y D+      D   ST G V  L G  V
Subjt:  PYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGS-KDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE17.9e-0635.16Show/hide
Query:  YAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDY-MLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTL
        Y   VGSL Y ++  RPDI Y+V  +S++   P  +H   +K IL+YL  T ++ + +     + L  Y+D+D+  DKD   ST G +  L
Subjt:  YAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDY-MLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE24.9e-0836.26Show/hide
Query:  YAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDY-MLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTL
        Y   VGSL Y ++  RPD+ Y+V  +S+Y   P  DHW  +K +L+YL  T D+ + +     + L  Y+D+D+  D D   ST G +  L
Subjt:  YAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDY-MLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTL

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.6e-0636.05Show/hide
Query:  YAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSK-DMILIGYTDSDFQTDKDARKSTLG
        Y   +G LMY +   R DI ++V  +S++   P   H   V  IL Y++ T    L Y S+ +M L  ++D+ FQ+ KD R+ST G
Subjt:  YAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSK-DMILIGYTDSDFQTDKDARKSTLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAACATTCCCTATGCTTATGCTGTTGGGAGCCTGATGTATGCTATGTCATGTATTAGACCTGACATTTGCTATTCAGTGGGGATAGTTAGTAGATATCAGTCCAA
TCCTGGATGTGATCATTGGACAACCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGATTACATGCTCGTGTATGGTTCTAAGGATATGATCCTTATTGGATACA
CTGACTCCGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATTAGGATCAGTTTTCACTCTTAATGGAGGAGCAGTAGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTAACATTCCCTATGCTTATGCTGTTGGGAGCCTGATGTATGCTATGTCATGTATTAGACCTGACATTTGCTATTCAGTGGGGATAGTTAGTAGATATCAGTCCAA
TCCTGGATGTGATCATTGGACAACCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGATTACATGCTCGTGTATGGTTCTAAGGATATGATCCTTATTGGATACA
CTGACTCCGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATTAGGATCAGTTTTCACTCTTAATGGAGGAGCAGTAGTATGA
Protein sequenceShow/hide protein sequence
MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAVV