; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0246541 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0246541
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr09:10490131..10491093
RNA-Seq ExpressionCmc09g0246541
SyntenyCmc09g0246541
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047001.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.9e-17897.22Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVG VTMQLAQLTVQPTLRQRIIDAQ NDPYLVEKRGLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA

Query:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK
        GQAVEFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA+FVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK
Subjt:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKS YTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP   
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---

Query:  -QTERLNQVLEDMLRACALEFPGS
         QTERLNQVLEDMLRACALEFPGS
Subjt:  -QTERLNQVLEDMLRACALEFPGS

KAA0051368.1 pol protein [Cucumis melo var. makuwa]2.6e-17796.6Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVG VTMQLAQLTVQPTLRQRIIDAQ NDPYLVEKRGLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA

Query:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK
        GQ  EFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA+FVS+CLVCQQVKAPRQKPAGLLQPLSIPEWK
Subjt:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP   
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---

Query:  -QTERLNQVLEDMLRACALEFPGS
         QTERLNQVLEDMLRACALEFPGS
Subjt:  -QTERLNQVLEDMLRACALEFPGS

KAA0059062.1 pol protein [Cucumis melo var. makuwa]2.0e-17796.6Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVG VTMQLAQLTVQPTLRQRIIDAQ NDPYLVEKRGLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA

Query:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK
        GQAVEFS+SSDGGLLFERRLCVPSDSA+KTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA+FVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK
Subjt:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWA+LYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTA GTRLDFSTAFHP   
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---

Query:  -QTERLNQVLEDMLRACALEFPGS
         QTERLNQVLEDMLRACALEFPGS
Subjt:  -QTERLNQVLEDMLRACALEFPGS

KAA0062112.1 pol protein [Cucumis melo var. makuwa]2.0e-17796.9Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVG VTMQLAQLTVQPTLRQRIIDAQ NDPYLVEKRGLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA

Query:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK
        GQAVEFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA+FVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK
Subjt:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT+SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQT+MGTRLDFSTAFHP   
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---

Query:  -QTERLNQVLEDMLRACALEFPG
         QTERLNQVLEDMLRACALEFPG
Subjt:  -QTERLNQVLEDMLRACALEFPG

TYK01613.1 pol protein [Cucumis melo var. makuwa]2.6e-17796.6Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVG VTMQLAQLTVQPTLRQRIIDAQ NDPYLVEKRGLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA

Query:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK
        GQ  EFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA+FVS+CLVCQQVKAPRQKPAGLLQPLSIPEWK
Subjt:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP   
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---

Query:  -QTERLNQVLEDMLRACALEFPGS
         QTERLNQVLEDMLRACALEFPGS
Subjt:  -QTERLNQVLEDMLRACALEFPGS

TrEMBL top hitse value%identityAlignment
A0A5A7U077 Reverse transcriptase3.3e-17897.22Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVG VTMQLAQLTVQPTLRQRIIDAQ NDPYLVEKRGLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA

Query:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK
        GQAVEFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA+FVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK
Subjt:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKS YTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP   
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---

Query:  -QTERLNQVLEDMLRACALEFPGS
         QTERLNQVLEDMLRACALEFPGS
Subjt:  -QTERLNQVLEDMLRACALEFPGS

A0A5A7U7V9 Reverse transcriptase1.3e-17796.6Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVG VTMQLAQLTVQPTLRQRIIDAQ NDPYLVEKRGLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA

Query:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK
        GQ  EFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA+FVS+CLVCQQVKAPRQKPAGLLQPLSIPEWK
Subjt:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP   
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---

Query:  -QTERLNQVLEDMLRACALEFPGS
         QTERLNQVLEDMLRACALEFPGS
Subjt:  -QTERLNQVLEDMLRACALEFPGS

A0A5A7UT37 Reverse transcriptase9.7e-17896.6Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVG VTMQLAQLTVQPTLRQRIIDAQ NDPYLVEKRGLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA

Query:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK
        GQAVEFS+SSDGGLLFERRLCVPSDSA+KTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA+FVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK
Subjt:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWA+LYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTA GTRLDFSTAFHP   
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---

Query:  -QTERLNQVLEDMLRACALEFPGS
         QTERLNQVLEDMLRACALEFPGS
Subjt:  -QTERLNQVLEDMLRACALEFPGS

A0A5A7V1N3 Reverse transcriptase9.7e-17896.9Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVG VTMQLAQLTVQPTLRQRIIDAQ NDPYLVEKRGLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA

Query:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK
        GQAVEFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA+FVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK
Subjt:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYT+SKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQT+MGTRLDFSTAFHP   
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---

Query:  -QTERLNQVLEDMLRACALEFPG
         QTERLNQVLEDMLRACALEFPG
Subjt:  -QTERLNQVLEDMLRACALEFPG

A0A5D3BPI1 Reverse transcriptase1.3e-17796.6Show/hide
Query:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA
        MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVG VTMQLAQLTVQPTLRQRIIDAQ NDPYLVEKRGLAEA
Subjt:  MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEA

Query:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK
        GQ  EFS+SSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVA+FVS+CLVCQQVKAPRQKPAGLLQPLSIPEWK
Subjt:  GQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWK

Query:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---
        WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP   
Subjt:  WENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP---

Query:  -QTERLNQVLEDMLRACALEFPGS
         QTERLNQVLEDMLRACALEFPGS
Subjt:  -QTERLNQVLEDMLRACALEFPGS

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.5e-3930.15Show/hide
Query:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEAG
        R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++    ND  L+    L    
Subjt:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEAG

Query:  QAVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEW
        + VE +I    GLL   +  + +P+D+ +   ++ + H     +HPG   +   + R + W+ +++++ ++V  C  CQ  K+   KP G LQP+   E 
Subjt:  QAVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEW

Query:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP--
         WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + P  
Subjt:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP--

Query:  --QTERLNQVLEDMLRACALEFPGS
          QTER NQ +E +LR      P +
Subjt:  --QTERLNQVLEDMLRACALEFPGS

P0CT35 Transposon Tf2-2 polyprotein1.5e-3930.15Show/hide
Query:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEAG
        R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++    ND  L+    L    
Subjt:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEAG

Query:  QAVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEW
        + VE +I    GLL   +  + +P+D+ +   ++ + H     +HPG   +   + R + W+ +++++ ++V  C  CQ  K+   KP G LQP+   E 
Subjt:  QAVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEW

Query:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP--
         WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + P  
Subjt:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP--

Query:  --QTERLNQVLEDMLRACALEFPGS
          QTER NQ +E +LR      P +
Subjt:  --QTERLNQVLEDMLRACALEFPGS

P0CT36 Transposon Tf2-3 polyprotein1.5e-3930.15Show/hide
Query:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEAG
        R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++    ND  L+    L    
Subjt:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEAG

Query:  QAVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEW
        + VE +I    GLL   +  + +P+D+ +   ++ + H     +HPG   +   + R + W+ +++++ ++V  C  CQ  K+   KP G LQP+   E 
Subjt:  QAVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEW

Query:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP--
         WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + P  
Subjt:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP--

Query:  --QTERLNQVLEDMLRACALEFPGS
          QTER NQ +E +LR      P +
Subjt:  --QTERLNQVLEDMLRACALEFPGS

P0CT41 Transposon Tf2-12 polyprotein1.5e-3930.15Show/hide
Query:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEAG
        R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++    ND  L+    L    
Subjt:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEAG

Query:  QAVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEW
        + VE +I    GLL   +  + +P+D+ +   ++ + H     +HPG   +   + R + W+ +++++ ++V  C  CQ  K+   KP G LQP+   E 
Subjt:  QAVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEW

Query:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP--
         WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + P  
Subjt:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP--

Query:  --QTERLNQVLEDMLRACALEFPGS
          QTER NQ +E +LR      P +
Subjt:  --QTERLNQVLEDMLRACALEFPGS

Q9UR07 Transposon Tf2-11 polyprotein1.5e-3930.15Show/hide
Query:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEAG
        R  RW   ++D++ EI Y PG AN +ADALSR       ++    P+ +D E   I          + Q+++    + +++    ND  L+    L    
Subjt:  RQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEAG

Query:  QAVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEW
        + VE +I    GLL   +  + +P+D+ +   ++ + H     +HPG   +   + R + W+ +++++ ++V  C  CQ  K+   KP G LQP+   E 
Subjt:  QAVEFSISSDGGLLFERR--LCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEW

Query:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP--
         WE++SMDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I++D D  FTS+ WK         + FS  + P  
Subjt:  KWENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHP--

Query:  --QTERLNQVLEDMLRACALEFPGS
          QTER NQ +E +LR      P +
Subjt:  --QTERLNQVLEDMLRACALEFPGS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACAGCGAAGATGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCAAATGTGGTAGCCGATGCTCTTAGTAGAAAGGTATCACA
TTCAGCAGCACTTATTACCCGACAGGCCCCATTGCATCGGGATCTCGAGCGGGCTGAGATTGCAGTGTCAGTGGGGCCAGTCACTATGCAGTTAGCCCAGTTGACGGTAC
AGCCGACTTTGAGGCAAAGGATCATTGATGCTCAGGGTAACGATCCCTATTTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGCAAGCGGTTGAGTTCTCCATATCCTCT
GATGGTGGACTTTTGTTTGAGAGACGCCTCTGTGTGCCGTCAGATAGTGCGGTTAAGACAGAATTATTATCTGAGGCTCACAGTTCCCCGTTTTCCATGCACCCAGGTAG
TACGAAGATGTATCAGGACCTGAAGCGGGTCTATTGGTGGCGTAACATGAAGAGGGAGGTAGCAAAATTTGTTAGTAGATGCTTGGTGTGTCAGCAGGTTAAGGCACCAA
GGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTCATTACCGGACTGCCGAGAACTCTGAGGGGTTTTACA
GTGATTTGGGTTGTGGTGGACAGACTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTGAG
GTTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAG
CTTTCCATCCACAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGACAGCGAAGATGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCAAATGTGGTAGCCGATGCTCTTAGTAGAAAGGTATCACA
TTCAGCAGCACTTATTACCCGACAGGCCCCATTGCATCGGGATCTCGAGCGGGCTGAGATTGCAGTGTCAGTGGGGCCAGTCACTATGCAGTTAGCCCAGTTGACGGTAC
AGCCGACTTTGAGGCAAAGGATCATTGATGCTCAGGGTAACGATCCCTATTTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGCAAGCGGTTGAGTTCTCCATATCCTCT
GATGGTGGACTTTTGTTTGAGAGACGCCTCTGTGTGCCGTCAGATAGTGCGGTTAAGACAGAATTATTATCTGAGGCTCACAGTTCCCCGTTTTCCATGCACCCAGGTAG
TACGAAGATGTATCAGGACCTGAAGCGGGTCTATTGGTGGCGTAACATGAAGAGGGAGGTAGCAAAATTTGTTAGTAGATGCTTGGTGTGTCAGCAGGTTAAGGCACCAA
GGCAGAAACCAGCGGGTTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAAAACGTGTCCATGGATTTCATTACCGGACTGCCGAGAACTCTGAGGGGTTTTACA
GTGATTTGGGTTGTGGTGGACAGACTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGCTGTACATGTCTGAGATAGTGAG
GTTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAG
CTTTCCATCCACAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGA
Protein sequenceShow/hide protein sequence
MRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGPVTMQLAQLTVQPTLRQRIIDAQGNDPYLVEKRGLAEAGQAVEFSISS
DGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAKFVSRCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFT
VIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTERLNQVLEDMLRACALEFPGS