; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0246571 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0246571
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr09:10515669..10515977
RNA-Seq ExpressionCmc09g0246571
SyntenyCmc09g0246571
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035636.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.6e-4996.08Show/hide
Query:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA
        METIPYASIVG LLYAQTCTRPDISFAVGMLGRYQSNPGMDHWK AKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFA CVD RKSTFGYLFLLAEGA
Subjt:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA

Query:  IS
        IS
Subjt:  IS

KAA0046843.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.6e-4996.08Show/hide
Query:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA
        METIPYASIVG LLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDF  CVD RKSTFGYLFLLAEGA
Subjt:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA

Query:  IS
        IS
Subjt:  IS

KAA0047434.1 F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa]5.4e-52100Show/hide
Query:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA
        METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA
Subjt:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA

Query:  IS
        IS
Subjt:  IS

KAA0051161.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.2e-4895.1Show/hide
Query:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA
        METIPYASIVG LLYAQTCTRPDISFAVGMLGRYQSN GMDHWKAAKKVLRYL+GTKDYMLTYKRSDHLEVIGYSDSDFA CVD RKSTFGYLFLLAEGA
Subjt:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA

Query:  IS
        IS
Subjt:  IS

KAA0061426.1 F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa]1.6e-4895.1Show/hide
Query:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA
        METIPYASIVG LLYAQTCTRPDISF VGMLGRYQSNPGMDHWK AKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFA CVD RKSTFGYLFLLAEGA
Subjt:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA

Query:  IS
        IS
Subjt:  IS

TrEMBL top hitse value%identityAlignment
A0A5A7T0B6 Retrovirus-related Pol polyprotein from transposon TNT 1-942.7e-4996.08Show/hide
Query:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA
        METIPYASIVG LLYAQTCTRPDISFAVGMLGRYQSNPGMDHWK AKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFA CVD RKSTFGYLFLLAEGA
Subjt:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA

Query:  IS
        IS
Subjt:  IS

A0A5A7TTF5 Retrovirus-related Pol polyprotein from transposon TNT 1-942.7e-4996.08Show/hide
Query:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA
        METIPYASIVG LLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDF  CVD RKSTFGYLFLLAEGA
Subjt:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA

Query:  IS
        IS
Subjt:  IS

A0A5A7UCB2 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-4895.1Show/hide
Query:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA
        METIPYASIVG LLYAQTCTRPDISFAVGMLGRYQSN GMDHWKAAKKVLRYL+GTKDYMLTYKRSDHLEVIGYSDSDFA CVD RKSTFGYLFLLAEGA
Subjt:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA

Query:  IS
        IS
Subjt:  IS

A0A5A7V4M2 F-box/FBD/LRR-repeat protein7.9e-4995.1Show/hide
Query:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA
        METIPYASIVG LLYAQTCTRPDISF VGMLGRYQSNPGMDHWK AKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFA CVD RKSTFGYLFLLAEGA
Subjt:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA

Query:  IS
        IS
Subjt:  IS

A0A5D3BK93 F-box/FBD/LRR-repeat protein2.6e-52100Show/hide
Query:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA
        METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA
Subjt:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA

Query:  IS
        IS
Subjt:  IS

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.5e-1748.91Show/hide
Query:  PYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLE--VIGYSDSDFARCVDIRKSTFGYLF
        P  S++GCL+Y   CTRPD++ AV +L RY S    + W+  K+VLRYL+GT D  L +K++   E  +IGY DSD+A     RKST GYLF
Subjt:  PYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLE--VIGYSDSDFARCVDIRKSTFGYLF

P0CV72 Secreted RxLR effector protein 1612.7e-2247.06Show/hide
Query:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA
        M+ +PY S VG ++Y    TRPD++ AVG+L ++ S+P   HW+A K+VLRYLQ T+ Y L + R+   +++GYSD+D+A  V+ R+ST GYLF L  G 
Subjt:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA

Query:  IS
        +S
Subjt:  IS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.2e-2350.98Show/hide
Query:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA
        M  +PY+S VG L+YA  CTRPDI+ AVG++ R+  NPG +HW+A K +LRYL+GT    L +  SD + + GY+D+D A  +D RKS+ GYLF  + GA
Subjt:  METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGA

Query:  IS
        IS
Subjt:  IS

P25600 Putative transposon Ty5-1 protein YCL074W1.1e-1238.78Show/hide
Query:  PYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGAIS
        PY SIVG LL+     RPDIS+ V +L R+   P   H ++A++VLRYL  T+   L Y+    L +  Y D+      D+  ST GY+ LLA   ++
Subjt:  PYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGAIS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE29.4e-1545.36Show/hide
Query:  YASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGAIS
        Y  IVG L Y    TRPD+S+AV  L +Y   P  DHW A K+VLRYL GT D+ +  K+ + L +  YSD+D+A   D   ST GY+  L    IS
Subjt:  YASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGAIS

Arabidopsis top hitse value%identityAlignment
ATMG00240.1 Gag-Pol-related retrotransposon family protein4.2e-1037.97Show/hide
Query:  TCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLL
        T TRPD++FAV  L ++ S       +A  KVL Y++GT    L Y  +  L++  ++DSD+A C D R+S  G+  L+
Subjt:  TCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLL

ATMG00810.1 DNA/RNA polymerases superfamily protein1.3e-1139.18Show/hide
Query:  YASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGAIS
        + SIVG L Y  T TRPDIS+AV ++ +    P +  +   K+VLRY++GT  + L   ++  L V  + DSD+A C   R+ST G+   L    IS
Subjt:  YASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGAIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACTATTCCTTATGCATCTATTGTTGGATGCTTATTGTATGCACAAACTTGCACTAGACCAGACATCAGTTTTGCTGTGGGTATGCTAGGCAGGTATCAAAGTAA
TCCAGGAATGGATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCTGCAAGGAACAAAAGATTATATGCTTACTTACAAAAGATCTGATCATCTTGAGGTGATTGGAT
ATTCAGATTCAGATTTTGCCAGATGTGTGGATATAAGAAAATCCACTTTTGGCTATTTGTTCCTGTTAGCTGAAGGAGCAATTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACTATTCCTTATGCATCTATTGTTGGATGCTTATTGTATGCACAAACTTGCACTAGACCAGACATCAGTTTTGCTGTGGGTATGCTAGGCAGGTATCAAAGTAA
TCCAGGAATGGATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCTGCAAGGAACAAAAGATTATATGCTTACTTACAAAAGATCTGATCATCTTGAGGTGATTGGAT
ATTCAGATTCAGATTTTGCCAGATGTGTGGATATAAGAAAATCCACTTTTGGCTATTTGTTCCTGTTAGCTGAAGGAGCAATTTCATGA
Protein sequenceShow/hide protein sequence
METIPYASIVGCLLYAQTCTRPDISFAVGMLGRYQSNPGMDHWKAAKKVLRYLQGTKDYMLTYKRSDHLEVIGYSDSDFARCVDIRKSTFGYLFLLAEGAIS