CuGenDBv2

Gene ID	Cmc09g0246771
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr09:10888796..10889518
RNA-Seq Expression	Cmc09g0246771
Synteny	Cmc09g0246771
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008194 - UDP-glycosyltransferase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025802.1 pol protein [Cucumis melo var. makuwa]

2.5e-116

87.5

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Query:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD
        MLRACVLEFS SWD +LHLMEFAYNNSYQAT+G+A FEALYGKCCRSP+CW E+GE+R+LGP+LVQTTNATIQKIRAR+LTAQSR KSYADVRRK LEF+
Subjt:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD

Query:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK
        VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILE+IGPVAYRLALPPSFSAVHDV HVSMLR+YV DPTHVVDFEPLQI+ENLSYEEQP+EILAREVK
Subjt:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK

Query:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED
        +LHNR ISLVKVLWRNH +EEAT EREEDMR Q P+LFED
Subjt:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED

KAA0047468.1 hypothetical protein E6C27_scaffold498G00810 [Cucumis melo var. makuwa]

8.6e-133

100

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Query:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD
        MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD
Subjt:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD

Query:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK
        VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK
Subjt:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK

Query:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED
        RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED
Subjt:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED

KAA0051386.1 putative Retrotransposon protein [Cucumis melo var. makuwa]

4.7e-115

85.83

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Query:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD
        MLRACVLEFSESWD +LHLMEFAYNNSYQAT+G+A FEALYGKCCRSP+CW+E+GE+R+LGP+LVQ TN  IQKIRAR+LTAQSRQKSYADVRRK+LEF+
Subjt:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD

Query:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK
        VGDMVFLKVAPMKGVLRF KKGKLSPRFVGPFEILE+IGPVAYRLALPPSFSAVHDVFHVSMLR+YV DPTHVVDFEPLQI+ENLSYEEQP+E+LAREVK
Subjt:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK

Query:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED
        +L +R ISLVK+LW+NH VEEAT EREEDMR Q PELFED
Subjt:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED

KAA0063793.1 pol protein [Cucumis melo var. makuwa]

1.8e-114

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Query:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD
        MLRACVLEFS SWD +LHLMEFAYNNSYQAT+G+A FEALYGKCCRSP+CW E+GE+R+LGP+LVQTTNA IQKIRAR+LTAQSRQKSYADVRRKDLEF+
Subjt:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD

Query:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK
        VGDMVFLKVAPMKGV+RF KKGKLSPRFVGPFEILE+IGPVAYRLALPPSF+AVHDVFH+SMLRKYV DPTHVVDFEPLQI+ENLSYEEQP+E+LAREVK
Subjt:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK

Query:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED
        +L +R I LVK+LW+NH VEEAT E+EEDMR Q PELFED
Subjt:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED

TYJ98666.1 hypothetical protein E5676_scaffold507G00570 [Cucumis melo var. makuwa]

8.6e-133

100

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Query:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD
        MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD
Subjt:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD

Query:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK
        VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK
Subjt:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK

Query:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED
        RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED
Subjt:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SKZ1 Pol protein

1.2e-116

87.5

Show/hide

Query:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD
        MLRACVLEFS SWD +LHLMEFAYNNSYQAT+G+A FEALYGKCCRSP+CW E+GE+R+LGP+LVQTTNATIQKIRAR+LTAQSR KSYADVRRK LEF+
Subjt:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD

Query:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK
        VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILE+IGPVAYRLALPPSFSAVHDV HVSMLR+YV DPTHVVDFEPLQI+ENLSYEEQP+EILAREVK
Subjt:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK

Query:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED
        +LHNR ISLVKVLWRNH +EEAT EREEDMR Q P+LFED
Subjt:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED

A0A5A7TP01 Reverse transcriptase

8.7e-115

85.42

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Query:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD
        MLRACVLEFS SWD +LHLMEFAYNNSYQAT+G+A FEALYGKCCRSP+CW E+GE+R+LGP+LVQTTNA IQKIRAR+LTAQSRQKSYADVRRKDLEF+
Subjt:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD

Query:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK
        VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILE+IGPVAYRLALPPS SAVHDVFHVSMLR+YV DPTH+VDFEPLQ++ENLSYEEQP+EILARE+K
Subjt:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK

Query:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED
        +L +R I LVKVLW+NH VEEAT EREEDM+TQ PELFE+
Subjt:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED

A0A5A7TX34 Uncharacterized protein

4.2e-133

100

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Query:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD
        MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD
Subjt:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD

Query:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK
        VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK
Subjt:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK

Query:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED
        RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED
Subjt:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED

A0A5A7UB12 Reverse transcriptase

2.3e-115

85.83

Show/hide

Query:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD
        MLRACVLEFSESWD +LHLMEFAYNNSYQAT+G+A FEALYGKCCRSP+CW+E+GE+R+LGP+LVQ TN  IQKIRAR+LTAQSRQKSYADVRRK+LEF+
Subjt:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD

Query:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK
        VGDMVFLKVAPMKGVLRF KKGKLSPRFVGPFEILE+IGPVAYRLALPPSFSAVHDVFHVSMLR+YV DPTHVVDFEPLQI+ENLSYEEQP+E+LAREVK
Subjt:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK

Query:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED
        +L +R ISLVK+LW+NH VEEAT EREEDMR Q PELFED
Subjt:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED

A0A5D3BHW7 Uncharacterized protein

4.2e-133

100

Show/hide

Query:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD
        MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD
Subjt:  MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFD

Query:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK
        VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK
Subjt:  VGDMVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVK

Query:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED
        RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED
Subjt:  RLHNRVISLVKVLWRNHRVEEATCEREEDMRTQCPELFED

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCTGCGAGCCTGTGTGCTAGAGTTTTCCGAGAGTTGGGACTTCTATTTGCATTTGATGGAGTTCGCCTATAATAACAGTTATCAGGCCACCGTTGGTATCGCGCTGTT
TGAAGCTCTGTATGGTAAGTGTTGCAGGTCTCCTCTCTGTTGGGAGGAGATAGGCGAACGGCGACTGCTAGGTCCCAAGTTAGTGCAGACCACCAATGCGACCATACAGA
AGATTAGAGCTCGTATATTGACAGCACAGAGCAGACAGAAGAGTTATGCTGATGTCCGACGTAAAGATCTCGAGTTTGACGTAGGAGACATGGTTTTTCTAAAGGTGGCA
CCGATGAAGGGTGTTTTGAGGTTCGAGAAGAAGGGGAAGCTAAGTCCACGTTTTGTAGGGCCATTTGAGATACTGGAGCAGATTGGCCCTGTAGCTTACCGTTTGGCGTT
GCCCCCATCATTTTCTGCAGTACATGATGTATTCCATGTCTCCATGCTGAGGAAGTATGTCGTAGACCCGACACATGTAGTTGATTTCGAACCATTACAAATTAATGAGA
ACTTGAGCTACGAGGAGCAACCTATTGAGATTTTGGCAAGGGAGGTCAAGAGGCTCCATAATCGAGTAATTTCTCTGGTCAAGGTTCTTTGGCGAAACCACAGAGTTGAA
GAGGCCACGTGCGAGAGAGAAGAGGACATGAGAACCCAGTGCCCCGAGCTGTTCGAGGATTAG

mRNA sequence

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Protein sequence

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MLRACVLEFSESWDFYLHLMEFAYNNSYQATVGIALFEALYGKCCRSPLCWEEIGERRLLGPKLVQTTNATIQKIRARILTAQSRQKSYADVRRKDLEFDVGDMVFLKVA
PMKGVLRFEKKGKLSPRFVGPFEILEQIGPVAYRLALPPSFSAVHDVFHVSMLRKYVVDPTHVVDFEPLQINENLSYEEQPIEILAREVKRLHNRVISLVKVLWRNHRVE
EATCEREEDMRTQCPELFED

Cmc09g0246771 (gene) of Melon (Charmono) v1.1 genome