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Cmc09g0246841 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0246841
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr09:10955811..10956311
RNA-Seq ExpressionCmc09g0246841
SyntenyCmc09g0246841
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR032567 - LDOC1-related
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036604.1 polyprotein [Cucumis melo var. makuwa]2.0e-8090.36Show/hide
Query:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF
        MI+HEIELVPG KPPAKNAYRMAPPELA LRKQLDELLNA FIR AKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV NKYPLPIITDLFDCLHG KYF
Subjt:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF

Query:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY
         KLDL+SG+YQVRI EGDEPKTTCVTRYGAFEF VMPFGLTNA  TFCTL+N VFHEYLDKFVVVY
Subjt:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-7989.76Show/hide
Query:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF
        MI+HEIELVPGAKPPAKNAYRMAPPELA LRKQLDELLNA FIR AKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFD LHG KYF
Subjt:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF

Query:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY
         KLDL+SG+YQVRI EGDEPKTTCVTRYGAFEF VMPFGLTNA  TFCTL+N VFHEYLDKFVVVY
Subjt:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-7989.76Show/hide
Query:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF
        MI+HEIELVPGAKPPAKNAYRMAPPELA LRKQLDELLNA FIR AKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFD LHG KYF
Subjt:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF

Query:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY
         KLDL+SG+YQVRI EGDEPKTTCVTRYGAFEF VMPFGLTNA  TFCTL+N VFHEYLDKFVVVY
Subjt:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY

TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-7990.36Show/hide
Query:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF
        MI+HEIELVPGAKPPAKNAYRMAPPELA LRKQLDELLNA FIR AKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV NKYPLPIITDLFD LHG KYF
Subjt:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF

Query:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY
         KLDL+SG+YQVRI EGDEPKTTCVTRYGAFEF VMPFGLTNA  TFCTL+N VFHEYLDKFVVVY
Subjt:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY

TYK28653.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-7990.36Show/hide
Query:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF
        MI+HEIELVPGAKPPAKNAYRMAPPELA LRKQLDELLNA FIR AKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV NKYPLPIITDLFD LHG KYF
Subjt:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF

Query:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY
         KLDL+SG+YQVRI EGDEPKTTCVTRYGAFEF VMPFGLTNA  TFCTL+N VFHEYLDKFVVVY
Subjt:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY

TrEMBL top hitse value%identityAlignment
A0A5A7SZ91 Polyprotein9.7e-8190.36Show/hide
Query:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF
        MI+HEIELVPG KPPAKNAYRMAPPELA LRKQLDELLNA FIR AKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV NKYPLPIITDLFDCLHG KYF
Subjt:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF

Query:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY
         KLDL+SG+YQVRI EGDEPKTTCVTRYGAFEF VMPFGLTNA  TFCTL+N VFHEYLDKFVVVY
Subjt:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY

A0A5D3BRZ6 Reverse transcriptase1.1e-7989.76Show/hide
Query:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF
        MI+HEIELVPGAKPPAKNAYRMAPPELA LRKQLDELLNA FIR AKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFD LHG KYF
Subjt:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF

Query:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY
         KLDL+SG+YQVRI EGDEPKTTCVTRYGAFEF VMPFGLTNA  TFCTL+N VFHEYLDKFVVVY
Subjt:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY

A0A5D3C4R1 Reverse transcriptase1.1e-7989.76Show/hide
Query:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF
        MI+HEIELVPGAKPPAKNAYRMAPPELA LRKQLDELLNA FIR AKAPYGAPVLFQ+KKDGSLRLCIDYRALNKLTV NKYPLPIITDLFD LHG KYF
Subjt:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF

Query:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY
         KLDL+SG+YQVRI EGDEPKTTCVTRYGAFEF VMPFGLTNA  TFCTL+N VFHEYLDKFVVVY
Subjt:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY

A0A5D3C9P8 Reverse transcriptase4.8e-8090.36Show/hide
Query:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF
        MI+HEIELVPGAKPPAKNAYRMAPPELA LRKQLDELLNA FIR AKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV NKYPLPIITDLFD LHG KYF
Subjt:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF

Query:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY
         KLDL+SG+YQVRI EGDEPKTTCVTRYGAFEF VMPFGLTNA  TFCTL+N VFHEYLDKFVVVY
Subjt:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY

A0A5D3DY42 Reverse transcriptase4.8e-8090.36Show/hide
Query:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF
        MI+HEIELVPGAKPPAKNAYRMAPPELA LRKQLDELLNA FIR AKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTV NKYPLPIITDLFD LHG KYF
Subjt:  MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF

Query:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY
         KLDL+SG+YQVRI EGDEPKTTCVTRYGAFEF VMPFGLTNA  TFCTL+N VFHEYLDKFVVVY
Subjt:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.8e-2336.14Show/hide
Query:  IEHEIELV-PGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF
        +E E+EL     + P +N Y + P ++  +  ++++ L +  IR +KA    PV+F  KK+G+LR+ +DY+ LNK    N YPLP+I  L   + G   F
Subjt:  IEHEIELV-PGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF

Query:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY
         KLDL+S ++ +R+ +GDE K       G FE+ VMP+G++ A   F   IN +  E  +  VV Y
Subjt:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY

P0CT41 Transposon Tf2-12 polyprotein1.8e-2336.14Show/hide
Query:  IEHEIELV-PGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF
        +E E+EL     + P +N Y + P ++  +  ++++ L +  IR +KA    PV+F  KK+G+LR+ +DY+ LNK    N YPLP+I  L   + G   F
Subjt:  IEHEIELV-PGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYF

Query:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY
         KLDL+S ++ +R+ +GDE K       G FE+ VMP+G++ A   F   IN +  E  +  VV Y
Subjt:  LKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY

P31843 RNA-directed DNA polymerase homolog3.7e-3770.19Show/hide
Query:  SLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYFLKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKF
        SLR+CIDYRAL K+T+ NKYP+P + DLFD L    +F KLDL+SG++QVRI +GDEPKTTCVTRYG+FEF VMPFGLTNA  TFC L+N V +EYLD F
Subjt:  SLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYFLKLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKF

Query:  VVVY
        VVVY
Subjt:  VVVY

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.2e-2839.39Show/hide
Query:  IEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYFL
        ++H+IE+ PGA+ P    Y +       + K + +LL+ +FI  +K+P  +PV+   KKDG+ RLC+DYR LNK T+ + +PLP I +L   +   + F 
Subjt:  IEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYFL

Query:  KLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY
         LDL SG++Q+ +   D  KT  VT  G +E+ VMPFGL NA +TF   +   F +   +FV VY
Subjt:  KLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY

Q99315 Transposon Ty3-G Gag-Pol polyprotein3.2e-2839.39Show/hide
Query:  IEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYFL
        ++H+IE+ PGA+ P    Y +       + K + +LL+ +FI  +K+P  +PV+   KKDG+ RLC+DYR LNK T+ + +PLP I +L   +   + F 
Subjt:  IEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYFL

Query:  KLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY
         LDL SG++Q+ +   D  KT  VT  G +E+ VMPFGL NA +TF   +   F +   +FV VY
Subjt:  KLDLQSGHYQVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGAACATGAGATCGAGCTAGTGCCAGGGGCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCCCCTCCGGAGTTAGCTGTACTTCGGAAACAACTAGATGAGTT
ATTGAATGCAAGGTTTATTAGGCTTGCAAAAGCTCCGTATGGGGCCCCAGTTCTTTTCCAGAAGAAGAAGGATGGGAGTTTACGATTGTGCATCGACTATCGTGCCTTGA
ACAAGCTCACGGTTTGCAACAAATATCCACTTCCCATAATCACTGACTTGTTTGATTGCTTACATGGGGTAAAGTATTTTTTGAAATTGGACTTGCAGTCGGGACACTAC
CAAGTGAGAATTGTAGAGGGAGATGAGCCTAAGACAACCTGTGTCACCAGATATGGAGCGTTTGAGTTCTTCGTAATGCCATTTGGTCTTACCAATGCCTCTACAACCTT
TTGTACGTTGATAAACCTGGTCTTCCATGAATATCTCGACAAGTTTGTAGTGGTCTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTGAACATGAGATCGAGCTAGTGCCAGGGGCAAAACCGCCTGCGAAGAATGCTTATCGTATGGCCCCTCCGGAGTTAGCTGTACTTCGGAAACAACTAGATGAGTT
ATTGAATGCAAGGTTTATTAGGCTTGCAAAAGCTCCGTATGGGGCCCCAGTTCTTTTCCAGAAGAAGAAGGATGGGAGTTTACGATTGTGCATCGACTATCGTGCCTTGA
ACAAGCTCACGGTTTGCAACAAATATCCACTTCCCATAATCACTGACTTGTTTGATTGCTTACATGGGGTAAAGTATTTTTTGAAATTGGACTTGCAGTCGGGACACTAC
CAAGTGAGAATTGTAGAGGGAGATGAGCCTAAGACAACCTGTGTCACCAGATATGGAGCGTTTGAGTTCTTCGTAATGCCATTTGGTCTTACCAATGCCTCTACAACCTT
TTGTACGTTGATAAACCTGGTCTTCCATGAATATCTCGACAAGTTTGTAGTGGTCTACTAG
Protein sequenceShow/hide protein sequence
MIEHEIELVPGAKPPAKNAYRMAPPELAVLRKQLDELLNARFIRLAKAPYGAPVLFQKKKDGSLRLCIDYRALNKLTVCNKYPLPIITDLFDCLHGVKYFLKLDLQSGHY
QVRIVEGDEPKTTCVTRYGAFEFFVMPFGLTNASTTFCTLINLVFHEYLDKFVVVY