; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0247041 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0247041
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description30S ribosomal protein S13, putative
Genome locationCMiso1.1chr09:11456218..11456788
RNA-Seq ExpressionCmc09g0247041
SyntenyCmc09g0247041
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001892 - Ribosomal protein S13
IPR010979 - Ribosomal protein S13-like, H2TH
IPR027437 - 30s ribosomal protein S13, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047526.1 small ribosomal subunit protein S13 [Cucumis melo var. makuwa]3.9e-56100Show/hide
Query:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQRTKTNARTMKSK
        MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQRTKTNARTMKSK
Subjt:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQRTKTNARTMKSK

Query:  QTHVGKRKTFC
        QTHVGKRKTFC
Subjt:  QTHVGKRKTFC

XP_004140326.1 small ribosomal subunit protein S13, mitochondrial isoform X1 [Cucumis sativus]5.0e-1953.04Show/hide
Query:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTL-----LGCRKFSAIEGLLPCRGQRTKTNAR
        M+IPDSKPLKFALQ INGIG+ARANQVLAQL  +  L K L K+  +FL        +        +  +     + C +    E  LPCRGQRTKTNAR
Subjt:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTL-----LGCRKFSAIEGLLPCRGQRTKTNAR

Query:  TMKSKQTHVGKRKTF
        T+KSKQT VGKRK F
Subjt:  TMKSKQTHVGKRKTF

XP_011655183.1 small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Cucumis sativus]5.0e-1953.04Show/hide
Query:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTL-----LGCRKFSAIEGLLPCRGQRTKTNAR
        M+IPDSKPLKFALQ INGIG+ARANQVLAQL  +  L K L K+  +FL        +        +  +     + C +    E  LPCRGQRTKTNAR
Subjt:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTL-----LGCRKFSAIEGLLPCRGQRTKTNAR

Query:  TMKSKQTHVGKRKTF
        T+KSKQT VGKRK F
Subjt:  TMKSKQTHVGKRKTF

XP_038876075.1 small ribosomal subunit protein S13, mitochondrial-like isoform X1 [Benincasa hispida]4.9e-1445.69Show/hide
Query:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNAR
        M+IP++KPLK+ALQ INGIG++RANQVL++L  +  L K L K   + L        +     N  K  +   +      G+     LPCRGQRTKTNAR
Subjt:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNAR

Query:  TMKSKQTHV-GKRKTF
        TMKSKQ  V G +K F
Subjt:  TMKSKQTHV-GKRKTF

XP_038876076.1 small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Benincasa hispida]4.9e-1445.69Show/hide
Query:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNAR
        M+IP++KPLK+ALQ INGIG++RANQVL++L  +  L K L K   + L        +     N  K  +   +      G+     LPCRGQRTKTNAR
Subjt:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNAR

Query:  TMKSKQTHV-GKRKTF
        TMKSKQ  V G +K F
Subjt:  TMKSKQTHV-GKRKTF

TrEMBL top hitse value%identityAlignment
A0A0A0KMX9 Uncharacterized protein2.4e-1953.04Show/hide
Query:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTL-----LGCRKFSAIEGLLPCRGQRTKTNAR
        M+IPDSKPLKFALQ INGIG+ARANQVLAQL  +  L K L K+  +FL        +        +  +     + C +    E  LPCRGQRTKTNAR
Subjt:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTL-----LGCRKFSAIEGLLPCRGQRTKTNAR

Query:  TMKSKQTHVGKRKTF
        T+KSKQT VGKRK F
Subjt:  TMKSKQTHVGKRKTF

A0A5D3DT03 Small ribosomal subunit protein S131.9e-56100Show/hide
Query:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQRTKTNARTMKSK
        MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQRTKTNARTMKSK
Subjt:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQRTKTNARTMKSK

Query:  QTHVGKRKTFC
        QTHVGKRKTFC
Subjt:  QTHVGKRKTFC

A0A6J1CKC9 30S ribosomal protein S13, chloroplastic-like1.2e-1346.49Show/hide
Query:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNAR
        M+IPD KPL+FALQ I+GIG++RANQVLA+L     L K L K   + L        +     +  K  +   ++     G+     LPCRGQRTKTNAR
Subjt:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNAR

Query:  TMKSKQTHV-GKRK
        TMKSKQ  V GK+K
Subjt:  TMKSKQTHV-GKRK

A0A6J1FGA3 30S ribosomal protein S13, chloroplastic-like1.5e-1345.13Show/hide
Query:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNAR
        ++IPD+KPLK+ALQ INGIG++RA QVLA+L  +  L K L K   + L        +        K  +   +      G+     LPCRGQRTKTNAR
Subjt:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNAR

Query:  TMKSKQTHVGKRK
        TMKSKQ   GK+K
Subjt:  TMKSKQTHVGKRK

A0A6J1JVL8 small ribosomal subunit protein S13, mitochondrial-like5.8e-1345.13Show/hide
Query:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNAR
        M+IPD+KPLK+ALQ INGIG++RA QVLA+L  +  L K L K   + L        +        K  +   +      G+     LPCRGQRTKTNAR
Subjt:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNAR

Query:  TMKSKQTHVGKRK
        TMKSKQ    K+K
Subjt:  TMKSKQTHVGKRK

SwissProt top hitse value%identityAlignment
C0Q9V0 30S ribosomal protein S132.5e-0532.46Show/hide
Query:  IPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSL-----FLQTRFP---STRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQRTKTNA
        +P +K ++ AL  I GIG+ R+ Q+L ++    +L    L E  +      + + F      R  +S +N+ +   LGC +       LPCRGQRT TNA
Subjt:  IPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSL-----FLQTRFP---STRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQRTKTNA

Query:  RTMKSKQTHVGKRK
        RT K  +    K+K
Subjt:  RTMKSKQTHVGKRK

P42732 30S ribosomal protein S13, chloroplastic8.4e-0930.7Show/hide
Query:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNAR
        ++IP +K ++++LQ I+GIG+ RA Q+L  L  +  + K + +E  + L+       ++          +   ++     G+     LPCRGQRTK N R
Subjt:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNAR

Query:  TMKSKQTHV-GKRK
        T+K K+  + GK+K
Subjt:  TMKSKQTHV-GKRK

P82163 30S ribosomal protein S13, chloroplastic1.2e-0734.48Show/hide
Query:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLD-----MSWINVFKGTLLGC-RKFSAIEGLLPCRGQRTKTNA
        ++IP++K ++++LQ I+GIG++RA Q+L  L  +  L K L ++  L ++       ++      + I + +   + C R    I+G LPCRGQRTK N 
Subjt:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLD-----MSWINVFKGTLLGC-RKFSAIEGLLPCRGQRTKTNA

Query:  RTMK-SKQTHV-GKRK
        RT+K  K+  + GK+K
Subjt:  RTMK-SKQTHV-GKRK

Q8LPW2 Small ribosomal subunit protein S13, mitochondrial1.1e-0834.23Show/hide
Query:  KIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLD---MSWINVFKGTLLGCRKFSAIEGL--LPCRGQRTKTNART
        +IPD+K L +ALQ ++GIG+++A  ++A+L  +    K L K     ++       +       +    G L+G + +  I  +  LPCRGQRT TNART
Subjt:  KIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLD---MSWINVFKGTLLGCRKFSAIEGL--LPCRGQRTKTNART

Query:  MKSKQTHVGKR
         +S++T  G R
Subjt:  MKSKQTHVGKR

Q9CA19 Small ribosomal subunit protein S13, mitochondrial2.3e-0633.63Show/hide
Query:  KIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFL-----QTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQRTKTNART
        ++P++KPLK  LQ + GIG+ +++QVL  L     L + L  +  + L     Q +            + +   + C + S     LPCRGQRT TNART
Subjt:  KIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFL-----QTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQRTKTNART

Query:  MKSKQTHV-GKRK
         K K   + GK+K
Subjt:  MKSKQTHV-GKRK

Arabidopsis top hitse value%identityAlignment
AT1G77750.1 Ribosomal protein S13/S18 family1.6e-0733.63Show/hide
Query:  KIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFL-----QTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQRTKTNART
        ++P++KPLK  LQ + GIG+ +++QVL  L     L + L  +  + L     Q +            + +   + C + S     LPCRGQRT TNART
Subjt:  KIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFL-----QTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQRTKTNART

Query:  MKSKQTHV-GKRK
         K K   + GK+K
Subjt:  MKSKQTHV-GKRK

AT5G14320.1 Ribosomal protein S13/S18 family5.9e-1030.7Show/hide
Query:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNAR
        ++IP +K ++++LQ I+GIG+ RA Q+L  L  +  + K + +E  + L+       ++          +   ++     G+     LPCRGQRTK N R
Subjt:  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGL-----LPCRGQRTKTNAR

Query:  TMKSKQTHV-GKRK
        T+K K+  + GK+K
Subjt:  TMKSKQTHV-GKRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATTCCCGATAGCAAACCACTCAAATTTGCACTTCAGTGCATCAATGGAATTGGCCAAGCGAGAGCAAACCAAGTTCTTGCCCAGCTTCCTTGGAAAACAAGCTT
GCCAAAGATATTACTAAAAGAGAGCTCCTTGTTCTTGCAGACCAGATTTCCAAGTACACGGTTGGACATGAGCTGGATAAATGTGTTCAAAGGGACATTGCTAGGTTGCA
GGAAATTCAGTGCCATAGAGGGATTATTACCATGTAGAGGCCAACGAACGAAGACTAATGCTAGGACTATGAAGTCGAAACAGACCCATGTTGGAAAGAGGAAAACCTTT
TGTTGA
mRNA sequenceShow/hide mRNA sequence
ATCCAGTCAATTCATTTAGGAGCAGGTATGAAGATTCCCGATAGCAAACCACTCAAATTTGCACTTCAGTGCATCAATGGAATTGGCCAAGCGAGAGCAAACCAAGTTCT
TGCCCAGCTTCCTTGGAAAACAAGCTTGCCAAAGATATTACTAAAAGAGAGCTCCTTGTTCTTGCAGACCAGATTTCCAAGTACACGGTTGGACATGAGCTGGATAAATG
TGTTCAAAGGGACATTGCTAGGTTGCAGGAAATTCAGTGCCATAGAGGGATTATTACCATGTAGAGGCCAACGAACGAAGACTAATGCTAGGACTATGAAGTCGAAACAG
ACCCATGTTGGAAAGAGGAAAACCTTTTGTTGAGCAAATGGTTTTGCAGTTTCTCCTCTCTTCTTGCGTTCTTGAACTGATTGATTATAAACATATTTGGATTCCACCAA
GTTTCATTATTTCTCTTATTACTCCCAAATTGTCTGATATTTTGTTTAGT
Protein sequenceShow/hide protein sequence
MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMSWINVFKGTLLGCRKFSAIEGLLPCRGQRTKTNARTMKSKQTHVGKRKTF
C