CuGenDBv2

Gene ID	Cmc09g0247061
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr09:11479727..11480629
RNA-Seq Expression	Cmc09g0247061
Synteny	Cmc09g0247061
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041373 - Reverse transcriptase, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0042119.1 pol protein [Cucumis melo var. makuwa]

5.6e-128

79.67

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Query:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW
        MSFGLTNAP VFM+LMN+VF++FLDTFVIVFIDDIL YSKTE EHEEHLRM+L+TLR NKLYA FSK                        +KIEA+TSW
Subjt:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW

Query:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYA
         RPSTVSEVRSFLGLAGYY RF+E+FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA ILT+PD SGSFVIYSDAS+KGL  VLMQQGKVV YA
Subjt:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYA

Query:  SRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK
        SRQLKS E+NY THDLELAAVVF LKIWRHYLYGEKIQIF DHKSLKYFFTQKELNMRQR WLELVKDYDCEILYHP KAN+V DALSRK SHSAALIT+
Subjt:  SRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK

KAA0046094.1 gag protease polyprotein [Cucumis melo var. makuwa]

8.7e-129

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Query:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW
        MSFGLTNAP VFMNLMN+VF++FLDTFVIVFIDDIL YSKTE EHEEHLRM+L+TLR NKLYA FSK                        +KIEA+T W
Subjt:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW

Query:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYA
         RPSTVSEVRSFLGLAGYY RF+E+FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSDASKKGL  VLMQQGKVV YA
Subjt:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYA

Query:  SRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK
        SRQLKS E+NY THDLELAAVVF LKIWRHYLYGEKIQIF DHKSLKYFFTQKELNMRQR WLELVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Subjt:  SRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

3.3e-128

79.67

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Query:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW
        MSFGLTNAP VFM+LMN+VF++FLDTFVIVFIDDIL YSKTE EHEEHLRM+L+TLR NKLYA FSK                        +KIEA+T W
Subjt:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW

Query:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYA
         RPSTVSEVRSFLGLAGYY RF+E+FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSDASKKGL  VLMQQGKVV YA
Subjt:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYA

Query:  SRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK
        SRQLKS E+NY THDLELAAVVF LKIWRHYLYGEKIQIF DHKSLKYFFTQKELNMRQR WLELVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Subjt:  SRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK

KAA0051357.1 pol protein [Cucumis melo var. makuwa]

3.3e-128

79.67

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Query:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW
        MSFGLTNAP VFM+LMN+VF++FLDTFVIVFIDDIL YSKTE EHEEHLRM+L+TLR NKLYA FSK                        +KIEA+T W
Subjt:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW

Query:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYA
         RPSTVSEVRSFLGLAGYY RF+E+FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSDASKKGL  VLMQQGKVV YA
Subjt:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYA

Query:  SRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK
        SRQLKS E+NY THDLELAAVVF LKIWRHYLYGEKIQIF DHKSLKYFFTQKELNMRQR WLELVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Subjt:  SRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK

KAA0059062.1 pol protein [Cucumis melo var. makuwa]

2.4e-131

86.23

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Query:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSKSKIEAITSWPRPSTVSEVRSFLGLAGYYHRFME
        MSFGLTNAP VFM+LMN+VF++FLDTFVIVFIDDIL YSKTE EHE+HLRM+L+TLR NKLYA FSKSKIEA+T W  PSTVSEVRSFLGLAGYY RF+E
Subjt:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSKSKIEAITSWPRPSTVSEVRSFLGLAGYYHRFME

Query:  DFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYASRQLKSREENYLTHDLELAAVVFV
        +FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSDASKKGL  VLMQQGKVV YASRQLKS E+NY THDLELAAVVF 
Subjt:  DFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYASRQLKSREENYLTHDLELAAVVFV

Query:  LKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK
        LKIWRHYLYGEKIQIF DHKSLKYFFTQKELNMRQR WLELVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Subjt:  LKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T190 Reverse transcriptase

2.7e-128

79.67

Show/hide

Query:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW
        MSFGLTNAP VFM+LMN+VF++FLDTFVIVFIDDIL YSKTEVEHEEHLRM+L+TLR NKLYA F K                        +KIEA+T W
Subjt:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW

Query:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYA
         RPSTVSEVRSFLGLAGYY RF+E+FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSDASKKGL  VLMQQGKVV YA
Subjt:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYA

Query:  SRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK
        SRQLKS E+NY THDLELAAVVF LKIWRHYLYGEKIQIF DHKSLKYFFTQKELNMRQR WLELVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Subjt:  SRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK

A0A5A7TSQ8 Reverse transcriptase

4.2e-129

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Query:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW
        MSFGLTNAP VFMNLMN+VF++FLDTFVIVFIDDIL YSKTE EHEEHLRM+L+TLR NKLYA FSK                        +KIEA+T W
Subjt:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW

Query:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYA
         RPSTVSEVRSFLGLAGYY RF+E+FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSDASKKGL  VLMQQGKVV YA
Subjt:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYA

Query:  SRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK
        SRQLKS E+NY THDLELAAVVF LKIWRHYLYGEKIQIF DHKSLKYFFTQKELNMRQR WLELVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Subjt:  SRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK

A0A5A7U330 Reverse transcriptase

1.6e-128

79.67

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Query:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW
        MSFGLTNAP VFM+LMN+VF++FLDTFVIVFIDDIL YSKTE EHEEHLRM+L+TLR NKLYA FSK                        +KIEA+T W
Subjt:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW

Query:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYA
         RPSTVSEVRSFLGLAGYY RF+E+FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSDASKKGL  VLMQQGKVV YA
Subjt:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYA

Query:  SRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK
        SRQLKS E+NY THDLELAAVVF LKIWRHYLYGEKIQIF DHKSLKYFFTQKELNMRQR WLELVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Subjt:  SRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK

A0A5A7UAA8 Reverse transcriptase

1.6e-128

79.67

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Query:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW
        MSFGLTNAP VFM+LMN+VF++FLDTFVIVFIDDIL YSKTE EHEEHLRM+L+TLR NKLYA FSK                        +KIEA+T W
Subjt:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW

Query:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYA
         RPSTVSEVRSFLGLAGYY RF+E+FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSDASKKGL  VLMQQGKVV YA
Subjt:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYA

Query:  SRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK
        SRQLKS E+NY THDLELAAVVF LKIWRHYLYGEKIQIF DHKSLKYFFTQKELNMRQR WLELVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Subjt:  SRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK

A0A5A7UT37 Reverse transcriptase

1.2e-131

86.23

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Query:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSKSKIEAITSWPRPSTVSEVRSFLGLAGYYHRFME
        MSFGLTNAP VFM+LMN+VF++FLDTFVIVFIDDIL YSKTE EHE+HLRM+L+TLR NKLYA FSKSKIEA+T W  PSTVSEVRSFLGLAGYY RF+E
Subjt:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSKSKIEAITSWPRPSTVSEVRSFLGLAGYYHRFME

Query:  DFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYASRQLKSREENYLTHDLELAAVVFV
        +FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSDASKKGL  VLMQQGKVV YASRQLKS E+NY THDLELAAVVF 
Subjt:  DFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYASRQLKSREENYLTHDLELAAVVFV

Query:  LKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK
        LKIWRHYLYGEKIQIF DHKSLKYFFTQKELNMRQR WLELVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Subjt:  LKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

1.0e-39

34.14

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Query:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW
        M FGL NAP  F   MN + +  L+   +V++DDI+ +S +  EH + L ++ E L    L     K                         KIEAI  +
Subjt:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW

Query:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDS-FQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTY
        P P+   E+++FLGL GYY +F+ +F+ IA P T+  +K      +    DS F+ LK  +    IL +PD +  F + +DAS   L  VL Q G  ++Y
Subjt:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDS-FQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTY

Query:  ASRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSR
         SR L   E NY T + EL A+V+  K +RHYL G   +I  DH+ L + +  K+ N +   W   + ++D +I Y   K N V DALSR
Subjt:  ASRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSR

P0CT41 Transposon Tf2-12 polyprotein

8.7e-31

29.04

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Query:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW
        M +G++ AP  F   +N +  +  ++ V+ ++DDIL +SK+E EH +H++ +L+ L+   L  N +K                          I+ +  W
Subjt:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSK------------------------SKIEAITSW

Query:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGK-----
         +P    E+R FLG   Y  +F+   S++  P   L +K   + W+     + +N+KQ LV+  +L   D S   ++ +DAS   +  VL Q+       
Subjt:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGK-----

Query:  VVTYASRQLKSREENYLTHDLELAAVVFVLKIWRHYLYG--EKIQIFMDHKSLKYFFTQKE--LNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKV
         V Y S ++   + NY   D E+ A++  LK WRHYL    E  +I  DH++L    T +    N R   W   ++D++ EI Y P  AN + DALSR V
Subjt:  VVTYASRQLKSREENYLTHDLELAAVVFVLKIWRHYLYG--EKIQIFMDHKSLKYFFTQKE--LNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKV

Query:  SHS
          +
Subjt:  SHS

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

6.6e-39

31.68

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Query:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETL-----RANKLYANFSK-------------------SKIEAITSW
        + FGL NA ++F   ++ V ++ +     V++DD++ +S+ E +H  H+  +L+ L     R ++    F K                    K++AI  +
Subjt:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETL-----RANKLYANFSK-------------------SKIEAITSW

Query:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTR-----------KGAPFVWSKACKDSFQNLKQKLVTAS-ILTIPDCSGSFVIYSDASKKGLSY
        P P  V +VRSFLGLA YY  F++DF+ IA P T + +           K  P  +++  +++FQ L+  L +   IL  PD    F + +DAS  G+  
Subjt:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTR-----------KGAPFVWSKACKDSFQNLKQKLVTAS-ILTIPDCSGSFVIYSDASKKGLSY

Query:  VLMQQGKVVTYASRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEK-IQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDAL
        VL Q+G+ +T  SR LK  E+NY T++ EL A+V+ L   +++LYG + I IF DH+ L +    +  N + + W   +  ++ ++ Y P K N V DAL
Subjt:  VLMQQGKVVTYASRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEK-IQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDAL

Query:  SRK
        SR+
Subjt:  SRK

P20825 Retrovirus-related Pol polyprotein from transposon 297

1.2e-37

33.45

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Query:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEH------------EEHLRMILETLRANKLYANF------------SKSKIEAITSW
        M FGL NAP  F   MN + +  L+   +V++DDI+ +S +  EH            + +L++ L+     K  ANF            +  K++AI S+
Subjt:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEH------------EEHLRMILETLRANKLYANF------------SKSKIEAITSW

Query:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSK-ACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTY
        P P+   E+R+FLGL GYY +F+ +++ IA P T   +K       K    ++F+ LK  ++   IL +PD    FV+ +DAS   L  VL Q G  +++
Subjt:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSK-ACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTY

Query:  ASRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSR
         SR L   E NY   + EL A+V+  K +RHYL G +  I  DH+ L++    KE   +   W   + +Y  +I Y   K N V DALSR
Subjt:  ASRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

2.1e-40

30.82

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Query:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSKS------------------------KIEAITSW
        + FGL NAP +F  +++ + ++ +     V+IDDI+ +S+    H ++LR++L +L    L  N  KS                        K+ AI+  
Subjt:  MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSKS------------------------KIEAITSW

Query:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTR-----------KGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYV
        P P++V E++ FLG+  YY +F++D++++A P T LTR              P    +    SF +LK  L ++ IL  P  +  F + +DAS   +  V
Subjt:  PRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTR-----------KGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYV

Query:  LMQ----QGKVVTYASRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGE-KIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVV
        L Q    + + + Y SR L   EENY T + E+ A+++ L   R YLYG   I+++ DH+ L +    +  N + + W   +++Y+CE++Y P K+N+V 
Subjt:  LMQ----QGKVVTYASRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGE-KIQIFMDHKSLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVV

Query:  DALSR
        DALSR
Subjt:  DALSR

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

7.6e-14

30.53

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Query:  HLRMILETLRANKLYANFSK--------------------------SKIEAITSWPRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVW
        HL M+L+    ++ YAN  K                          +K+EA+  WP P   +E+R FLGL GYY RF++++ +I  P T+L +K +   W
Subjt:  HLRMILETLRANKLYANFSK--------------------------SKIEAITSWPRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVW

Query:  SKACKDSFQNLKQKLVTASILTIPDCSGSFV
        ++    +F+ LK  + T  +L +PD    FV
Subjt:  SKACKDSFQNLKQKLVTASILTIPDCSGSFV

Sequences

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CDS sequence

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ATGTCCTTTGGATTGACAAATGCTCCAACAGTGTTTATGAATTTGATGAACAAAGTGTTTAAGGATTTCTTAGACACTTTTGTAATTGTGTTTATTGATGATATCTTAAA
ATATTCCAAGACAGAGGTAGAGCATGAGGAGCACTTACGTATGATTCTAGAGACCCTTCGAGCCAATAAATTATATGCAAATTTTTCAAAATCTAAGATAGAGGCTATTA
CCAGTTGGCCCCGACCTTCCACAGTTAGTGAAGTTCGTAGCTTTTTAGGTTTAGCAGGTTATTACCATCGGTTTATGGAGGACTTTTCCCGTATAGCAACTCCTTTTACT
CAGTTGACCAGGAAGGGAGCTCCATTTGTTTGGAGCAAGGCATGTAAGGATAGTTTTCAGAACCTTAAACAGAAGCTCGTTACTGCATCGATTCTTACTATACCTGATTG
TTCAGGGAGTTTTGTGATTTATAGTGATGCTTCTAAGAAAGGTTTGAGTTATGTTCTAATGCAGCAAGGTAAAGTCGTCACTTATGCTTCTCGTCAGTTGAAGAGTCGTG
AGGAGAATTACCTTACCCATGATTTAGAGTTGGCAGCAGTAGTTTTTGTACTGAAGATATGGAGACATTATTTGTATGGCGAGAAGATACAAATTTTTATGGACCATAAA
AGCTTGAAATACTTCTTCACTCAAAAGGAGTTGAATATGAGGCAGCGAATATGGCTTGAATTAGTAAAGGATTATGATTGTGAGATATTGTATCATCCAAGTAAGGCAAA
TATAGTAGTTGATGCCCTTAGTAGGAAGGTATCACACTCAGCAGCACTCATCACCAAATAG

mRNA sequence

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Protein sequence

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MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSKSKIEAITSWPRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFT
QLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYASRQLKSREENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHK
SLKYFFTQKELNMRQRIWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK

Cmc09g0247061 (gene) of Melon (Charmono) v1.1 genome