; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0247511 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0247511
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr09:12262992..12263717
RNA-Seq ExpressionCmc09g0247511
SyntenyCmc09g0247511
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]8.1e-12393.78Show/hide
Query:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT
        MTLKVGTGDVISA  VGDAKLFF NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEA I KNG HICSAKLENNLYVL PNEAKAVLNHEMFRT
Subjt:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF
        ANTQNKRQRISPNNNTYLWHLRLGHINLDRI RLVKNGLLN+L+D SLPPCES LEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG FEYFISF
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF

Query:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL
        +DDYSRYGYLYLMEHKSEALEKFKEYK EVENLLSKKIKIL
Subjt:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]3.1e-12293.75Show/hide
Query:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT
        MTLKVGTGDVISA  VGDAKLFF NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEA I KNG HICSAKLENNLYVL PNEAKAVLNHEMFRT
Subjt:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF
        ANTQNKRQRISPNNNTYLWHLRLGHINLDRI RLVK+GLLN+L+D SLPPCES LEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF

Query:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI
        +DDYSRYGYLYLMEHKSEALEKFKEYK EVENLLSKKIKI
Subjt:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI

KAA0046415.1 gag/pol protein [Cucumis melo var. makuwa]4.6e-9472.8Show/hide
Query:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT
        MT++VGTG VISA  VG  +L  +  F+ LEN+Y+VP +KRNL+SV CL+E  YS+ F++N+  I KNG  ICSAKLENNLYVL    +KA+LN EMF+T
Subjt:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF
        A TQNKR +ISP  N +LWHLRLGHINL+RI RLVKNGLL+ELE++SLP CES LEGKMTKRPFTGKG+RAKEPLEL+HSDLCGPMNVKARG FEYFI+F
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF

Query:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIK
         DDYSRYGY+YLM+HKSEALEKFKEYKAEVEN LSK IK
Subjt:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIK

KAA0060534.1 gag/pol protein [Cucumis melo var. makuwa]3.2e-11991.29Show/hide
Query:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT
        M LKVGTGDVISA  VGDAKLFF NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSI+FSMNEA ISKNG HICS KLE+NLYVL PNE KAVLNHEMFRT
Subjt:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF
        ANTQNKRQRIS NNNTYLWHLRLGHINLDRI RLVKNGLLN+LEDDSLPPCES LEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKA G FEYFISF
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF

Query:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL
        +DDYS YGYLYL+EHKSEALEKFKEYK EVENLLSKKIKIL
Subjt:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL

KAA0067938.1 gag/pol protein [Cucumis melo var. makuwa]5.3e-11489.63Show/hide
Query:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT
        MTL VGTGDVISA  VGD KLFF  KFMFLENLYIVPKIKRNLV VSCLIEHMYSINFSMNEA ISKNG     AKLE+NLYVL PNEAKAVLNHEMFRT
Subjt:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF
        ANTQNKRQRISPNNNTYLWHLRL HINLDRI RLVKNGLLN+L+DDSLPPCES LEGKMTKRPFTGK YRAKEPLELIHSDLCGPMNVKARG FEYFISF
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF

Query:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL
        +DDYSRYGYLYLMEHK EALEKFKEYK EVENLLSKKIKIL
Subjt:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL

TrEMBL top hitse value%identityAlignment
A0A5A7T2V9 Gag/pol protein1.5e-12293.75Show/hide
Query:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT
        MTLKVGTGDVISA  VGDAKLFF NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEA I KNG HICSAKLENNLYVL PNEAKAVLNHEMFRT
Subjt:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF
        ANTQNKRQRISPNNNTYLWHLRLGHINLDRI RLVK+GLLN+L+D SLPPCES LEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF

Query:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI
        +DDYSRYGYLYLMEHKSEALEKFKEYK EVENLLSKKIKI
Subjt:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKI

A0A5A7TYF5 Gag/pol protein2.2e-9472.8Show/hide
Query:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT
        MT++VGTG VISA  VG  +L  +  F+ LEN+Y+VP +KRNL+SV CL+E  YS+ F++N+  I KNG  ICSAKLENNLYVL    +KA+LN EMF+T
Subjt:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF
        A TQNKR +ISP  N +LWHLRLGHINL+RI RLVKNGLL+ELE++SLP CES LEGKMTKRPFTGKG+RAKEPLEL+HSDLCGPMNVKARG FEYFI+F
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF

Query:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIK
         DDYSRYGY+YLM+HKSEALEKFKEYKAEVEN LSK IK
Subjt:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIK

A0A5A7TZD0 Gag/pol protein3.9e-12393.78Show/hide
Query:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT
        MTLKVGTGDVISA  VGDAKLFF NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEA I KNG HICSAKLENNLYVL PNEAKAVLNHEMFRT
Subjt:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF
        ANTQNKRQRISPNNNTYLWHLRLGHINLDRI RLVKNGLLN+L+D SLPPCES LEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG FEYFISF
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF

Query:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL
        +DDYSRYGYLYLMEHKSEALEKFKEYK EVENLLSKKIKIL
Subjt:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL

A0A5A7VJG3 Gag/pol protein2.5e-11489.63Show/hide
Query:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT
        MTL VGTGDVISA  VGD KLFF  KFMFLENLYIVPKIKRNLV VSCLIEHMYSINFSMNEA ISKNG     AKLE+NLYVL PNEAKAVLNHEMFRT
Subjt:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF
        ANTQNKRQRISPNNNTYLWHLRL HINLDRI RLVKNGLLN+L+DDSLPPCES LEGKMTKRPFTGK YRAKEPLELIHSDLCGPMNVKARG FEYFISF
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF

Query:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL
        +DDYSRYGYLYLMEHK EALEKFKEYK EVENLLSKKIKIL
Subjt:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL

A0A5D3BNE1 Gag/pol protein1.5e-11991.29Show/hide
Query:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT
        M LKVGTGDVISA  VGDAKLFF NKFMFLENLYIVPKIKRNLVSVSCLIEHMYSI+FSMNEA ISKNG HICS KLE+NLYVL PNE KAVLNHEMFRT
Subjt:  MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT

Query:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF
        ANTQNKRQRIS NNNTYLWHLRLGHINLDRI RLVKNGLLN+LEDDSLPPCES LEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKA G FEYFISF
Subjt:  ANTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF

Query:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL
        +DDYS YGYLYL+EHKSEALEKFKEYK EVENLLSKKIKIL
Subjt:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.2e-1530.77Show/hide
Query:  LENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHIC-SAKLENNLYVLIPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHIN-
        LE++    +   NL+SV  L E   SI F  +  +ISKNG  +  ++ + NN+          V+N + + + N ++K       NN  LWH R GHI+ 
Subjt:  LENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHIC-SAKLENNLYVLIPNEAKAVLNHEMFRTANTQNKRQRISPNNNTYLWHLRLGHIN-

Query:  -----LDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRA--KEPLELIHSDLCGPMNVKARGSFEYFISFMDDYSRYGYLYLMEHKSEAL
             + R        LLN LE  S   CE  L GK  + PF     +   K PL ++HSD+CGP+         YF+ F+D ++ Y   YL+++KS+  
Subjt:  -----LDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRA--KEPLELIHSDLCGPMNVKARGSFEYFISFMDDYSRYGYLYLMEHKSEAL

Query:  EKFKEYKAEVENLLSKKIKIL
          F+++ A+ E   + K+  L
Subjt:  EKFKEYKAEVENLLSKKIKIL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.6e-1726.85Show/hide
Query:  MFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT--ANTQNKRQRISPNNNTYLWHLRLGH
        + L+++  VP ++ NL+S   L    Y   F+  +  ++K    I                AK V    ++RT     Q +        +  LWH R+GH
Subjt:  MFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRT--ANTQNKRQRISPNNNTYLWHLRLGH

Query:  INLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISFMDDYSRYGYLYLMEHKSEALEKFKE
        ++   ++ L K  L++  +  ++ PC+  L GK  +  F     R    L+L++SD+CGPM +++ G  +YF++F+DD SR  ++Y+++ K +  + F++
Subjt:  INLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISFMDDYSRYGYLYLMEHKSEALEKFKE

Query:  YKAEVENLLSKKIKIL
        + A VE    +K+K L
Subjt:  YKAEVENLLSKKIKIL

Q12491 Transposon Ty2-B Gag-Pol polyprotein6.9e-0825.2Show/hide
Query:  ISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRTANTQNKRQRI
        I  + +G+    F+N           P I  +L+S+S L     +  F+ N    S +G  +       + Y L  ++   + +H    T N  NK +  
Subjt:  ISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRTANTQNKRQRI

Query:  SPNNNTY-LWHLRLGHINLDRIRRLVKNGLLNELEDDSLP-------PCESYLEGKMTKRPFTGKGYRAK-----EPLELIHSDLCGPMNVKARGSFEYF
        S N   Y L H  LGH N   I++ +K   +  L++  +         C   L GK TK     KG R K     EP + +H+D+ GP++   + +  YF
Subjt:  SPNNNTY-LWHLRLGHINLDRIRRLVKNGLLNELEDDSLP-------PCESYLEGKMTKRPFTGKGYRAK-----EPLELIHSDLCGPMNVKARGSFEYF

Query:  ISFMDDYSRYGYLYLMEHKSE--ALEKFKEYKAEVENLLSKKIKIL
        ISF D+ +R+ ++Y +  + E   L  F    A ++N  + ++ ++
Subjt:  ISFMDDYSRYGYLYLMEHKSE--ALEKFKEYKAEVENLLSKKIKIL

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE15.1e-1125.63Show/hide
Query:  VGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIE-HMYSINFSMNEASIS--KNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRTA
        V  G  I     G   L  +++ + L N+  VP I +NL+SV  L   +  S+ F      +     G  +   K ++ LY     E     +  +   A
Subjt:  VGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIE-HMYSINFSMNEASIS--KNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRTA

Query:  NTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELE-DDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF
        +  +K    S       WH RLGH     +  ++ N  L+ L        C   L  K  K PF+     +  PLE I+SD+     + +  ++ Y++ F
Subjt:  NTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELE-DDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF

Query:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKI
        +D ++RY +LY ++ KS+  E F  +K  +EN    +I
Subjt:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.3e-1126.97Show/hide
Query:  VGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIE-HMYSINFSMNEASIS--KNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRTA
        +  G  I     G A L   ++ + L  +  VP I +NL+SV  L   +  S+ F      +     G  +   K ++ LY      ++AV    MF  A
Subjt:  VGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIE-HMYSINFSMNEASIS--KNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRTA

Query:  NTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELE-DDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF
        +  +K    S       WH RLGH +L  +  ++ N  L  L     L  C      K  K PF+     + +PLE I+SD+     + +  ++ Y++ F
Subjt:  NTQNKRQRISPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELE-DDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISF

Query:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL
        +D ++RY +LY ++ KS+  + F  +K+ VEN    +I  L
Subjt:  MDDYSRYGYLYLMEHKSEALEKFKEYKAEVENLLSKKIKIL

Arabidopsis top hitse value%identityAlignment
ATMG00300.1 Gag-Pol-related retrotransposon family protein7.1e-0837.33Show/hide
Query:  NNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNV
        + T LWH RL H++   +  LVK G L+  +  SL  CE  + GK  +  F+   +  K PL+ +HSDL G  +V
Subjt:  NNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACTCAAGGTTGGAACGGGAGATGTCATTTCAGCTCATGTAGTGGGAGATGCTAAGTTGTTTTTCGAAAATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCC
TAAAATTAAAAGGAACCTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTCCATTTCTAAGAATGGTGCACATATTTGTT
CGGCTAAGCTTGAAAACAACTTGTATGTATTAATACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAAGAATT
TCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTTGATCGGATCAGAAGATTGGTAAAGAATGGACTTCTAAACGAGTTAGAAGATGATTC
ATTACCTCCATGTGAATCTTATCTTGAAGGAAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTG
GTCCGATGAATGTAAAAGCTAGAGGGAGTTTTGAATACTTCATCTCTTTTATGGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTT
GAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACACTCAAGGTTGGAACGGGAGATGTCATTTCAGCTCATGTAGTGGGAGATGCTAAGTTGTTTTTCGAAAATAAATTCATGTTTTTGGAAAACTTGTACATAGTTCC
TAAAATTAAAAGGAACCTAGTTTCCGTTTCTTGTCTTATTGAACATATGTACTCAATTAATTTTTCTATGAATGAAGCGTCCATTTCTAAGAATGGTGCACATATTTGTT
CGGCTAAGCTTGAAAACAACTTGTATGTATTAATACCTAATGAAGCAAAAGCAGTTTTAAATCATGAGATGTTTAGAACTGCTAATACTCAAAATAAAAGGCAAAGAATT
TCTCCAAATAACAATACCTATCTTTGGCATTTAAGATTAGGTCACATAAATCTTGATCGGATCAGAAGATTGGTAAAGAATGGACTTCTAAACGAGTTAGAAGATGATTC
ATTACCTCCATGTGAATCTTATCTTGAAGGAAAAATGACAAAGAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCTTTAGAACTTATACATTCAGACCTCTGTG
GTCCGATGAATGTAAAAGCTAGAGGGAGTTTTGAATACTTCATCTCTTTTATGGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCATAAGTCTGAAGCTCTT
GAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTTAA
Protein sequenceShow/hide protein sequence
MTLKVGTGDVISAHVVGDAKLFFENKFMFLENLYIVPKIKRNLVSVSCLIEHMYSINFSMNEASISKNGAHICSAKLENNLYVLIPNEAKAVLNHEMFRTANTQNKRQRI
SPNNNTYLWHLRLGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSFEYFISFMDDYSRYGYLYLMEHKSEAL
EKFKEYKAEVENLLSKKIKIL