CuGenDBv2

Gene ID	Cmc09g0247741
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr09:12772074..12772541
RNA-Seq Expression	Cmc09g0247741
Synteny	Cmc09g0247741
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035531.1 uncharacterized protein E6C27_scaffold285G001970 [Cucumis melo var. makuwa]

1.1e-67

92.81

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Query:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW
        MPFGLTNAPATFCTLMNQVFHEYLDKF+VVYL+DIVVYST MEEH+DHLQKVFQKLKENQLYVKREKCSFAQ+RINFLGHVIECGRIGMEEGKIA IR+W
Subjt:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW

Query:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK
         VPKSVSELR FL LANYYRRFVEGFSKRASPLTELLKK
Subjt:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK

KAA0057109.1 reverse transcriptase [Cucumis melo var. makuwa]

1.0e-73

89.68

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Query:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW
        MPFGLTNAPATFCTLMNQVFHEYLDKF+VVYL+DIVVYST MEEH+DHLQKVFQKLKENQLYVKREKCSFAQ++INFLGHVIECGRIGMEEGKIA IR+W
Subjt:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW

Query:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKKTFTGVGTPSAKPLSTA
         +PKSVSELR FL LANYYRRFVEGFSKRASPL +LLKKTFTG+GTPSAKP STA
Subjt:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKKTFTGVGTPSAKPLSTA

KAA0057285.1 uncharacterized protein E6C27_scaffold280G001260 [Cucumis melo var. makuwa]

1.8e-67

90.65

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Query:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW
        MPFGLTNAPATFCT+MNQVFHEYLDKF+VVYL+DIVVYST MEEH+DHLQKVFQKLKENQLYVKREKCSFAQ+RINFLGHVIECGRIGMEEGKIA IR+W
Subjt:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW

Query:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK
         +PKSVSELR FL+LANYYRRF+EGFSKRASPLTELLKK
Subjt:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK

KAA0063944.1 reverse transcriptase [Cucumis melo var. makuwa]

6.7e-70

87.74

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Query:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW
        MPFGLTNAPATFCTLMNQVFHEYLDKF+VVYL+DI+VYST MEEH+DHLQKVFQKLKENQLYVKREKCSFAQ+RINFLGHVIE GRIGME+GKIA IR+W
Subjt:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW

Query:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKKTFTGVGTPSAKPLSTA
         + KSVSELR FL LANYYRRFVEGFSKRASPLTELLKKTFTG+GT SAK  STA
Subjt:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKKTFTGVGTPSAKPLSTA

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

2.4e-67

92.09

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Query:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW
        MPFGLTNAPATFCTLMNQVFHEYLDKF+VVYL+DIVVYST MEEH+DHLQKVFQKLKENQLYVKREKCSFAQ+RINFLGHVIECGRIGMEEGKIA IR+W
Subjt:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW

Query:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK
         +PKSVSELR FL LANYYRRFVEGFSKRASPLTELLKK
Subjt:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1S6 Reverse transcriptase domain-containing protein

5.2e-68

92.81

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Query:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW
        MPFGLTNAPATFCTLMNQVFHEYLDKF+VVYL+DIVVYST MEEH+DHLQKVFQKLKENQLYVKREKCSFAQ+RINFLGHVIECGRIGMEEGKIA IR+W
Subjt:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW

Query:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK
         VPKSVSELR FL LANYYRRFVEGFSKRASPLTELLKK
Subjt:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK

A0A5A7UU89 Reverse transcriptase

4.8e-74

89.68

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Query:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW
        MPFGLTNAPATFCTLMNQVFHEYLDKF+VVYL+DIVVYST MEEH+DHLQKVFQKLKENQLYVKREKCSFAQ++INFLGHVIECGRIGMEEGKIA IR+W
Subjt:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW

Query:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKKTFTGVGTPSAKPLSTA
         +PKSVSELR FL LANYYRRFVEGFSKRASPL +LLKKTFTG+GTPSAKP STA
Subjt:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKKTFTGVGTPSAKPLSTA

A0A5A7UUR0 Reverse transcriptase domain-containing protein

8.8e-68

90.65

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Query:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW
        MPFGLTNAPATFCT+MNQVFHEYLDKF+VVYL+DIVVYST MEEH+DHLQKVFQKLKENQLYVKREKCSFAQ+RINFLGHVIECGRIGMEEGKIA IR+W
Subjt:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW

Query:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK
         +PKSVSELR FL+LANYYRRF+EGFSKRASPLTELLKK
Subjt:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK

A0A5A7V9N8 Reverse transcriptase

3.2e-70

87.74

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Query:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW
        MPFGLTNAPATFCTLMNQVFHEYLDKF+VVYL+DI+VYST MEEH+DHLQKVFQKLKENQLYVKREKCSFAQ+RINFLGHVIE GRIGME+GKIA IR+W
Subjt:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW

Query:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKKTFTGVGTPSAKPLSTA
         + KSVSELR FL LANYYRRFVEGFSKRASPLTELLKKTFTG+GT SAK  STA
Subjt:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKKTFTGVGTPSAKPLSTA

A0A5D3C4R1 Reverse transcriptase

1.2e-67

92.09

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Query:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW
        MPFGLTNAPATFCTLMNQVFHEYLDKF+VVYL+DIVVYST MEEH+DHLQKVFQKLKENQLYVKREKCSFAQ+RINFLGHVIECGRIGMEEGKIA IR+W
Subjt:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW

Query:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK
         +PKSVSELR FL LANYYRRFVEGFSKRASPLTELLKK
Subjt:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

2.8e-26

42.45

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Query:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW
        MPFGL NAPATF   MN +    L+K  +VYL+DI+V+ST ++EH   L  VF+KL +  L ++ +KC F +    FLGHV+    I     KI  I+ +
Subjt:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW

Query:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK
         +P    E++ FL L  YYR+F+  F+  A P+T+ LKK
Subjt:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK

P20825 Retrovirus-related Pol polyprotein from transposon 297

6.2e-26

41.01

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Query:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW
        MPFGL NAPATF   MN +    L+K  +VYL+DI+++ST + EH + +Q VF KL +  L ++ +KC F +   NFLGH++    I     K+  I ++
Subjt:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW

Query:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK
         +P    E+R FL L  YYR+F+  ++  A P+T  LKK
Subjt:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

4.0e-25

43.61

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Query:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW
        MPFGL NAP+TF   M   F +   +F+ VYL+DI+++S   EEH  HL  V ++LK   L VK++KC FA +   FLG+ I   +I   + K A IR++
Subjt:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW

Query:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPL
          PK+V + + FL + NYYRRF+   SK A P+
Subjt:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

2.0e-21

34.03

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Query:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW
        +PFGL NAPA F  +++ +  E++ K   VY++DI+V+S   + H  +L+ V   L +  L V  EK  F   ++ FLG+++    I  +  K+  I   
Subjt:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW

Query:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKKTFTGV
          P SV EL+ FL + +YYR+F++ ++K A PLT L +  +  +
Subjt:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKKTFTGV

Q99315 Transposon Ty3-G Gag-Pol polyprotein

4.0e-25

43.61

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Query:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW
        MPFGL NAP+TF   M   F +   +F+ VYL+DI+++S   EEH  HL  V ++LK   L VK++KC FA +   FLG+ I   +I   + K A IR++
Subjt:  MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNW

Query:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPL
          PK+V + + FL + NYYRRF+   SK A P+
Subjt:  TVPKSVSELRPFLKLANYYRRFVEGFSKRASPL

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

1.2e-16

43.16

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Query:  DHLQKVFQKLKENQLYVKREKCSFAQDRINFLG--HVIECGRIGMEEGKIAGIRNWTVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK
        +HL  V Q  +++Q Y  R+KC+F Q +I +LG  H+I    +  +  K+  +  W  PK+ +ELR FL L  YYRRFV+ + K   PLTELLKK
Subjt:  DHLQKVFQKLKENQLYVKREKCSFAQDRINFLG--HVIECGRIGMEEGKIAGIRNWTVPKSVSELRPFLKLANYYRRFVEGFSKRASPLTELLKK

Sequences

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CDS sequence

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ATGCCATTTGGTCTCACCAATGCCCCTGCAACCTTCTGTACATTGATGAACCAGGTCTTCCACGAATATCTTGATAAATTCATAGTAGTCTACCTGAATGATATAGTGGT
CTATAGTACGATCATGGAGGAACATAAAGACCACCTGCAAAAGGTTTTTCAGAAATTGAAGGAGAATCAACTGTATGTCAAAAGAGAAAAATGTTCTTTTGCACAAGATC
GGATAAACTTCTTGGGCCATGTGATAGAGTGTGGCCGAATTGGGATGGAAGAAGGGAAGATTGCTGGGATACGCAACTGGACAGTGCCGAAATCGGTCTCGGAGTTACGC
CCCTTCCTCAAGTTGGCAAATTACTATCGTCGATTTGTCGAGGGATTCTCCAAACGAGCAAGCCCGCTGACTGAACTACTGAAAAAGACGTTCACTGGAGTTGGGACCCC
GAGTGCCAAGCCGCTTTCGACGGCCTAA

mRNA sequence

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Protein sequence

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MPFGLTNAPATFCTLMNQVFHEYLDKFIVVYLNDIVVYSTIMEEHKDHLQKVFQKLKENQLYVKREKCSFAQDRINFLGHVIECGRIGMEEGKIAGIRNWTVPKSVSELR
PFLKLANYYRRFVEGFSKRASPLTELLKKTFTGVGTPSAKPLSTA

Cmc09g0247741 (gene) of Melon (Charmono) v1.1 genome