CuGenDBv2

Gene ID	Cmc09g0247791
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	30S ribosomal protein S4, chloroplastic
Genome location	CMiso1.1chr09:12871555..12871770
RNA-Seq Expression	Cmc09g0247791
Synteny	Cmc09g0247791
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009507 - chloroplast (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR002942 - RNA-binding S4 domain IPR022801 - Ribosomal protein S4/S9 IPR036986 - RNA-binding S4 domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AHM88823.1 ribosomal protein S4 [Lagenaria siceraria]

6.9e-22

96.49

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Query:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
        MASTIPQARQLV+HRHILVNGSIVDIPSYRCKPRDIITAKDEKKSR LIQNYLDSSP
Subjt:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP

QHB75965.1 ribosomal protein S4 [Cucumis melo subsp. melo]

4.1e-22

96.49

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Query:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
        M+STIPQARQLV+HRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
Subjt:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP

YP_004841785.1 ribosomal protein S4 [Cucumis melo subsp. melo]

1.8e-22

98.25

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Query:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
        MASTIPQARQLV+HRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
Subjt:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP

YP_009752161.1 ribosomal protein S4 [Linnaeosicyos amara]

6.9e-22

96.49

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Query:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
        MASTIPQARQLV+HRHILVNGSIVDIPSYRCKPRDIITAKDEKKSR LIQNYLDSSP
Subjt:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP

YP_247601.1 ribosomal protein S4 [Cucumis sativus]

1.8e-22

98.25

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Query:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
        MASTIPQARQLV+HRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
Subjt:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU11 30S ribosomal protein S4, chloroplastic

8.8e-23

98.25

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Query:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
        MASTIPQARQLV+HRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
Subjt:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP

A0A1X9Q1U9 30S ribosomal protein S4, chloroplastic

8.8e-23

98.25

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Query:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
        MASTIPQARQLV+HRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
Subjt:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP

A0A218KG36 30S ribosomal protein S4, chloroplastic

8.8e-23

98.25

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Query:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
        MASTIPQARQLV+HRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
Subjt:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP

A0A249RZ87 30S ribosomal protein S4, chloroplastic

8.8e-23

98.25

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Query:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
        MASTIPQARQLV+HRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
Subjt:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP

A0A286NFR5 30S ribosomal protein S4, chloroplastic

8.8e-23

98.25

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Query:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
        MASTIPQARQLV+HRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
Subjt:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP

SwissProt top hits

e value

%identity

Alignment

A0ZZ37 30S ribosomal protein S4, chloroplastic

4.2e-22

89.29

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Query:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSS
        MASTIPQARQLV+HRHILVNG  VDIPSYRCKPRDII+A+DE+KSRTLIQNYLDSS
Subjt:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSS

A6MM38 30S ribosomal protein S4, chloroplastic

6.5e-23

91.23

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Query:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
        MASTIP ARQLV+HRHILVNG IVDIPSYRCKPRDIITAKDE+KSR LIQNYLDSSP
Subjt:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP

Q2PMU5 30S ribosomal protein S4, chloroplastic

1.4e-22

84.21

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Query:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
        MA+TIPQARQL++HRH+LVNG IVDIPSYRCKP+DIITAKDE+KS+TLIQNYLDS+P
Subjt:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP

Q49KZ6 30S ribosomal protein S4, chloroplastic

2.5e-22

85.96

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Query:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
        MASTIPQARQLV+HRHILVNG IVDIPSYRCKPRDIITA+D++KSR +IQNY DSSP
Subjt:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP

Q4VZH3 30S ribosomal protein S4, chloroplastic

2.4e-25

98.25

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Query:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
        MASTIPQARQLV+HRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP
Subjt:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSP

Arabidopsis top hits

e value

%identity

Alignment

ATCG00380.1 chloroplast ribosomal protein S4

4.8e-21

83.93

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Query:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSS
        MA TIPQARQLV+H HILVNG IVDIPSYRCKPRDIIT KDE+ SRTL+QN LDSS
Subjt:  MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSS

Sequences

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CDS sequence

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ATGGCTTCGACTATTCCTCAAGCCCGACAATTAGTTCATCATAGACATATTTTAGTTAATGGTTCTATAGTGGATATACCAAGTTATCGGTGCAAACCCCGAGATATTAT
TACAGCAAAAGATGAAAAAAAATCGAGAACACTTATTCAAAATTATCTTGATTCATCCCCTTCAGGAATTGCCAAAACATTTGACTCTTCAGCCATTGCAATATAA

mRNA sequence

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Protein sequence

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MASTIPQARQLVHHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPSGIAKTFDSSAIAI

Cmc09g0247791 (gene) of Melon (Charmono) v1.1 genome