| GenBank top hits | e value | %identity | Alignment |
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| KAA0062338.1 putative retrotransposon [Cucumis melo var. makuwa] | 8.2e-74 | 96.67 | Show/hide |
Query: MSRNSHSDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPC
MSRNSHSDLSLRRFVKDRRPSTKYSPNEYLLLTE EPESYEEAIGGEHKREWNDVMKNEM+SLHAN TFKLVKL KGKTALKNKWIYRIKHEEHTSKPC
Subjt: MSRNSHSDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPC
Query: YKVRLVVKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV
YKVRLVVKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV
Subjt: YKVRLVVKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV
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| RVW22327.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 2.5e-54 | 61.17 | Show/hide |
Query: DLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLVV
D+ LRR +DR PST+YS ++Y+LLT+GGEPESY EA+ E+K +W D M++EMESLH NH+F+LVKLPKGK ALKN+W+YR+K EEHTS+P YK RLVV
Subjt: DLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLVV
Query: KGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
KGF+QKKGIDFDEIFS VVKM SIRV L TASLDLE++Q+DV VCKLKKSLYGLKQ PR
Subjt: KGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
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| RVW24009.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 3.2e-54 | 60.85 | Show/hide |
Query: SDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLV
SD+ LRR +DR PST+YS ++Y+LLT+GGEPESY EA+ E+K +W D M++EMESLH NH+F+LVKLPKGK ALKN+W+YR+K EEHTS+P YK RLV
Subjt: SDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLV
Query: VKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
VKGF+QKKGIDFDEIFS VVKM SIRV L ASLDLE++Q+DV VCKLKKSLYGLKQ PR
Subjt: VKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
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| RVW85908.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 3.2e-54 | 60.85 | Show/hide |
Query: SDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLV
SD+ LRR +DR PST+YS ++Y+LLT+GGEPESY EA+ E+K +W D M++EMESLH NH+F+LVKLPKGK ALKN+W+YR+K EEHTS+P YK RLV
Subjt: SDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLV
Query: VKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
VKGF+QKKGIDFDEIFS VVKM SIRV L ASLDLE++Q+DV VCKLKKSLYGLKQ PR
Subjt: VKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
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| RVX05270.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 4.2e-54 | 60.85 | Show/hide |
Query: SDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLV
SD+ LRR +DR PST+YS ++Y+LLT+GGEPESY EA+ E+K +W D M++EMESLH NH F+LVKLPKGK +LKN+W+YR+K EEHTS+P YK RLV
Subjt: SDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLV
Query: VKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
VKGF+QKKGIDFDEIFS VVKM SIRV L TASLDLE++Q+DV VCKLKKSLYGLKQ PR
Subjt: VKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A438CGI4 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.2e-54 | 61.17 | Show/hide |
Query: DLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLVV
D+ LRR +DR PST+YS ++Y+LLT+GGEPESY EA+ E+K +W D M++EMESLH NH+F+LVKLPKGK ALKN+W+YR+K EEHTS+P YK RLVV
Subjt: DLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLVV
Query: KGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
KGF+QKKGIDFDEIFS VVKM SIRV L TASLDLE++Q+DV VCKLKKSLYGLKQ PR
Subjt: KGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
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| A0A438CLF9 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.6e-54 | 60.85 | Show/hide |
Query: SDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLV
SD+ LRR +DR PST+YS ++Y+LLT+GGEPESY EA+ E+K +W D M++EMESLH NH+F+LVKLPKGK ALKN+W+YR+K EEHTS+P YK RLV
Subjt: SDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLV
Query: VKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
VKGF+QKKGIDFDEIFS VVKM SIRV L ASLDLE++Q+DV VCKLKKSLYGLKQ PR
Subjt: VKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
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| A0A438HN89 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.6e-54 | 60.85 | Show/hide |
Query: SDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLV
SD+ LRR +DR PST+YS ++Y+LLT+GGEPESY EA+ E+K +W D M++EMESLH NH+F+LVKLPKGK ALKN+W+YR+K EEHTS+P YK RLV
Subjt: SDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLV
Query: VKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
VKGF+QKKGIDFDEIFS VVKM SIRV L ASLDLE++Q+DV VCKLKKSLYGLKQ PR
Subjt: VKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
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| A0A438J8J9 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.0e-54 | 60.85 | Show/hide |
Query: SDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLV
SD+ LRR +DR PST+YS ++Y+LLT+GGEPESY EA+ E+K +W D M++EMESLH NH F+LVKLPKGK +LKN+W+YR+K EEHTS+P YK RLV
Subjt: SDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLV
Query: VKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
VKGF+QKKGIDFDEIFS VVKM SIRV L TASLDLE++Q+DV VCKLKKSLYGLKQ PR
Subjt: VKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
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| A0A5D3DSF0 Putative retrotransposon | 4.0e-74 | 96.67 | Show/hide |
Query: MSRNSHSDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPC
MSRNSHSDLSLRRFVKDRRPSTKYSPNEYLLLTE EPESYEEAIGGEHKREWNDVMKNEM+SLHAN TFKLVKL KGKTALKNKWIYRIKHEEHTSKPC
Subjt: MSRNSHSDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPC
Query: YKVRLVVKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV
YKVRLVVKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV
Subjt: YKVRLVVKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 3.6e-16 | 30.13 | Show/hide |
Query: PESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLVVKGFSQKKGIDFDEIFSQVVKMFSIRVALDF
P S++E + K W + + E+ + N+T+ + K P+ K + ++W++ +K+ E + YK RLV +GF+QK ID++E F+ V ++ S R L
Subjt: PESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLVVKGFSQKKGIDFDEIFSQVVKMFSIRVALDF
Query: TASLDLEVEQIDV---------------------------VCKLKKSLYGLKQTPR
+L+V Q+DV VCKL K++YGLKQ R
Subjt: TASLDLEVEQIDV---------------------------VCKLKKSLYGLKQTPR
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 8.3e-37 | 48.65 | Show/hide |
Query: LRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLVVKGF
LRR + R S +Y EY+L+++ EPES +E + K + M+ EMESL N T+KLV+LPKGK LK KW++++K + YK RLVVKGF
Subjt: LRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLVVKGF
Query: SQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
QKKGIDFDEIFS VVKM SIR L ASLDLEVEQ+DV VCKL KSLYGLKQ PR
Subjt: SQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
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| P92520 Uncharacterized mitochondrial protein AtMg00820 | 6.2e-08 | 35.16 | Show/hide |
Query: WNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLVVKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDL
W M+ E+++L N T+ LV P + L KW+++ K + K RLV KGF Q++GI F E +S VV+ +IR L+ L++
Subjt: WNDVMKNEMESLHANHTFKLVKLPKGKTALKNKWIYRIKHEEHTSKPCYKVRLVVKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDL
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 5.2e-15 | 32.12 | Show/hide |
Query: NSHSDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGK-TALKNKWIYRIKHEEHTSKPCYK
N+HS + R +P+ KYS + L EP + +A+ E W + M +E+ + NHT+ LV P T + +WI+ K+ S YK
Subjt: NSHSDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLVKLPKGK-TALKNKWIYRIKHEEHTSKPCYK
Query: VRLVVKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
RLV KG++Q+ G+D+ E FS V+K SIR+ L + Q+DV VCKL+K+LYGLKQ PR
Subjt: VRLVVKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 3.4e-14 | 31.09 | Show/hide |
Query: NSHSDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLV-KLPKGKTALKNKWIYRIKHEEHTSKPCYK
N+HS ++ R R+P+ KYS L EP + +A+ + W M +E+ + NHT+ LV P T + +WI+ K S YK
Subjt: NSHSDLSLRRFVKDRRPSTKYSPNEYLLLTEGGEPESYEEAIGGEHKREWNDVMKNEMESLHANHTFKLV-KLPKGKTALKNKWIYRIKHEEHTSKPCYK
Query: VRLVVKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
RLV KG++Q+ G+D+ E FS V+K SIR+ L + Q+DV VC+L+K++YGLKQ PR
Subjt: VRLVVKGFSQKKGIDFDEIFSQVVKMFSIRVALDFTASLDLEVEQIDV-----------------------------VCKLKKSLYGLKQTPR
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