; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0248191 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0248191
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr09:13473449..13474183
RNA-Seq ExpressionCmc09g0248191
SyntenyCmc09g0248191
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR032567 - LDOC1-related
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051360.1 uncharacterized protein E6C27_scaffold55G00840 [Cucumis melo var. makuwa]8.2e-11586.48Show/hide
Query:  MISAMQLKKGLTQDEPTFMAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNA
        MIS+MQLKKGL++DEPTFMAIPL SSEN GET+ K+I+ +LEKY DVMPDSLPKSLPPRRMIDHEIELV GAKPPAKNAY M PPELA+L K LDELLNA
Subjt:  MISAMQLKKGLTQDEPTFMAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNA

Query:  GFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGL
        GFIR AKAPYEAP+LFQ+KKD SLRLCIDYR LNKLT+ NKYPL IITDLFDRLH AKYFSKLDLRSGYYQV IAEGDEPKTT VTR+ AFEFLVMPFGL
Subjt:  GFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGL

Query:  TNAFATFCMLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL
        TNA ATFC LMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL
Subjt:  TNAFATFCMLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL

TYK01361.1 uncharacterized protein E5676_scaffold29G00470 [Cucumis melo var. makuwa]5.7e-11686.89Show/hide
Query:  MISAMQLKKGLTQDEPTFMAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNA
        MIS MQLKKGL++DEPTFMAIPL+SSEN GETI K+I+ +LEKY DVMPDSLPKSLPPRRMIDHEIELV GAKPPAKNAY M PPELA+LWKQLDELLNA
Subjt:  MISAMQLKKGLTQDEPTFMAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNA

Query:  GFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGL
        GFIR AKAPY A +L QKKKD SLRLCI+YR LNKLT+CNKYPL IITDLFDRLH AKYFSKLDLRSGYYQV IAEGDEPKTT VTR+ AFEFLVMPFGL
Subjt:  GFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGL

Query:  TNAFATFCMLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL
        TNAFATFC LMNQVFHEYLDKFVVVYLDDIVVYSTT+EEHRDHL
Subjt:  TNAFATFCMLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL

TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]6.3e-11587.3Show/hide
Query:  MISAMQLKKGLTQDEPTFMAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNA
        MISAMQLKKGL++DEPTFMAIPL+SSEN GET+ K+I+ +LEKY DVMPDSLPKSLPPRRMIDHEIELV GAKPPAKNAY M PPELA+L KQLDELLNA
Subjt:  MISAMQLKKGLTQDEPTFMAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNA

Query:  GFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGL
        GFIR AKAPY AP+LFQKKKD SLRLCIDYR LNKLT+ NKYPL IITDLFDRLH AKYFSKLDLRSGYYQV IAEGDEPKTT VTR+ AFEFLVMPFGL
Subjt:  GFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGL

Query:  TNAFATFCMLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL
        TNA ATFC LMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL
Subjt:  TNAFATFCMLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL

TYK28653.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-11587.7Show/hide
Query:  MISAMQLKKGLTQDEPTFMAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNA
        MISAMQLKKGL++DEPTFMAIPL+SSEN GET+SK+I+ +LEKY DVMPDSLPKSLPPRRMIDHEIELV GAKPPAKNAY M PPELA+L KQLDELLNA
Subjt:  MISAMQLKKGLTQDEPTFMAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNA

Query:  GFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGL
        GFIR AKAPY AP+LFQKKKD SLRLCIDYR LNKLT+ NKYPL IITDLFDRLH AKYFSKLDLRSGYYQV IAEGDEPKTT VTR+ AFEFLVMPFGL
Subjt:  GFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGL

Query:  TNAFATFCMLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL
        TNA ATFC LMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL
Subjt:  TNAFATFCMLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL

XP_016902560.1 PREDICTED: RNA-directed DNA polymerase homolog [Cucumis melo]4.4e-12498.23Show/hide
Query:  MAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNAGFIRSAKAPYEAPILFQK
        MAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPP+LA+LWKQLDELLNAGFIRSAKAPYEAPILFQK
Subjt:  MAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNAGFIRSAKAPYEAPILFQK

Query:  KKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGLTNAFATFCMLMNQVFHEY
        KKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAF+FLVMPFGLTNA ATFCMLMNQVFHEY
Subjt:  KKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGLTNAFATFCMLMNQVFHEY

Query:  LDKFVVVYLDDIVVYSTTMEEHRDHL
        LDKFVVVYLDDIVVYSTTMEEHRDHL
Subjt:  LDKFVVVYLDDIVVYSTTMEEHRDHL

TrEMBL top hitse value%identityAlignment
A0A1S4E3K3 RNA-directed DNA polymerase homolog2.1e-12498.23Show/hide
Query:  MAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNAGFIRSAKAPYEAPILFQK
        MAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPP+LA+LWKQLDELLNAGFIRSAKAPYEAPILFQK
Subjt:  MAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNAGFIRSAKAPYEAPILFQK

Query:  KKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGLTNAFATFCMLMNQVFHEY
        KKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAF+FLVMPFGLTNA ATFCMLMNQVFHEY
Subjt:  KKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGLTNAFATFCMLMNQVFHEY

Query:  LDKFVVVYLDDIVVYSTTMEEHRDHL
        LDKFVVVYLDDIVVYSTTMEEHRDHL
Subjt:  LDKFVVVYLDDIVVYSTTMEEHRDHL

A0A5D3BNI3 Reverse transcriptase domain-containing protein2.8e-11686.89Show/hide
Query:  MISAMQLKKGLTQDEPTFMAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNA
        MIS MQLKKGL++DEPTFMAIPL+SSEN GETI K+I+ +LEKY DVMPDSLPKSLPPRRMIDHEIELV GAKPPAKNAY M PPELA+LWKQLDELLNA
Subjt:  MISAMQLKKGLTQDEPTFMAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNA

Query:  GFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGL
        GFIR AKAPY A +L QKKKD SLRLCI+YR LNKLT+CNKYPL IITDLFDRLH AKYFSKLDLRSGYYQV IAEGDEPKTT VTR+ AFEFLVMPFGL
Subjt:  GFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGL

Query:  TNAFATFCMLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL
        TNAFATFC LMNQVFHEYLDKFVVVYLDDIVVYSTT+EEHRDHL
Subjt:  TNAFATFCMLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL

A0A5D3C9P8 Reverse transcriptase3.0e-11587.3Show/hide
Query:  MISAMQLKKGLTQDEPTFMAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNA
        MISAMQLKKGL++DEPTFMAIPL+SSEN GET+ K+I+ +LEKY DVMPDSLPKSLPPRRMIDHEIELV GAKPPAKNAY M PPELA+L KQLDELLNA
Subjt:  MISAMQLKKGLTQDEPTFMAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNA

Query:  GFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGL
        GFIR AKAPY AP+LFQKKKD SLRLCIDYR LNKLT+ NKYPL IITDLFDRLH AKYFSKLDLRSGYYQV IAEGDEPKTT VTR+ AFEFLVMPFGL
Subjt:  GFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGL

Query:  TNAFATFCMLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL
        TNA ATFC LMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL
Subjt:  TNAFATFCMLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL

A0A5D3DSY5 RNA-directed DNA polymerase-like protein2.1e-12498.23Show/hide
Query:  MAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNAGFIRSAKAPYEAPILFQK
        MAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPP+LA+LWKQLDELLNAGFIRSAKAPYEAPILFQK
Subjt:  MAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNAGFIRSAKAPYEAPILFQK

Query:  KKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGLTNAFATFCMLMNQVFHEY
        KKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAF+FLVMPFGLTNA ATFCMLMNQVFHEY
Subjt:  KKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGLTNAFATFCMLMNQVFHEY

Query:  LDKFVVVYLDDIVVYSTTMEEHRDHL
        LDKFVVVYLDDIVVYSTTMEEHRDHL
Subjt:  LDKFVVVYLDDIVVYSTTMEEHRDHL

A0A5D3DY42 Reverse transcriptase8.0e-11687.7Show/hide
Query:  MISAMQLKKGLTQDEPTFMAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNA
        MISAMQLKKGL++DEPTFMAIPL+SSEN GET+SK+I+ +LEKY DVMPDSLPKSLPPRRMIDHEIELV GAKPPAKNAY M PPELA+L KQLDELLNA
Subjt:  MISAMQLKKGLTQDEPTFMAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNA

Query:  GFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGL
        GFIR AKAPY AP+LFQKKKD SLRLCIDYR LNKLT+ NKYPL IITDLFDRLH AKYFSKLDLRSGYYQV IAEGDEPKTT VTR+ AFEFLVMPFGL
Subjt:  GFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGL

Query:  TNAFATFCMLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL
        TNA ATFC LMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL
Subjt:  TNAFATFCMLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHRDHL

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.68.5e-3035.21Show/hide
Query:  ILEKYHDVM---PDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNAGFIRSAKAPYEAPI-LFQKKKDVS----LRLCIDYR
        +L+KYHD+     D L  +   +  I+ +  L L +K     AY        ++  Q+ ++LN G IR++ +PY +PI +  KK+D S     R+ IDYR
Subjt:  ILEKYHDVM---PDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNAGFIRSAKAPYEAPI-LFQKKKDVS----LRLCIDYR

Query:  TLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGLTNAFATFCMLMNQVFHEYLDKFVVVYLDDIV
         LN++T+ +++P+  + ++  +L R  YF+ +DL  G++Q+ +      KT + T+   +E+L MPFGL NA ATF   MN +    L+K  +VYLDDI+
Subjt:  TLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGLTNAFATFCMLMNQVFHEYLDKFVVVYLDDIV

Query:  VYSTTMEEHRDHL
        V+ST+++EH   L
Subjt:  VYSTTMEEHRDHL

P0CT41 Transposon Tf2-12 polyprotein1.4e-2732.85Show/hide
Query:  ILEKYHDVMPDSLPKSLP-PRRMIDHEIELVL-GAKPPAKNAYCMVPPELAKLWKQLDELLNAGFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLT
        I +++ D+  ++  + LP P + ++ E+EL     + P +N Y + P ++  +  ++++ L +G IR +KA    P++F  KK+ +LR+ +DY+ LNK  
Subjt:  ILEKYHDVMPDSLPKSLP-PRRMIDHEIELVL-GAKPPAKNAYCMVPPELAKLWKQLDELLNAGFIRSAKAPYEAPILFQKKKDVSLRLCIDYRTLNKLT

Query:  ICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGLTNAFATFCMLMNQVFHEYLDKFVVVYLDDIVVYSTTM
          N YPL +I  L  ++  +  F+KLDL+S Y+ + + +GDE K  +      FE+LVMP+G++ A A F   +N +  E  +  VV Y+DDI+++S + 
Subjt:  ICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGLTNAFATFCMLMNQVFHEYLDKFVVVYLDDIVVYSTTM

Query:  EEHRDHL
         EH  H+
Subjt:  EEHRDHL

P31843 RNA-directed DNA polymerase homolog5.7e-4267.72Show/hide
Query:  DVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGLTNAFATFCMLMNQVFHEYLD
        ++SLR+CIDYR L K+TI NKYP+  + DLFDRL +A +F+KLDLRSGY+QV IA+GDEPKTT VTR+ +FEF VMPFGLTNA ATFC LMN V +EYLD
Subjt:  DVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGLTNAFATFCMLMNQVFHEYLD

Query:  KFVVVYLDDIVV---YSTTMEEHRDHL
         FVVVYLDD+VV   YS ++ EH  HL
Subjt:  KFVVVYLDDIVV---YSTTMEEHRDHL

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.9e-3438.03Show/hide
Query:  LYILEKYHDVMPDSLP------KSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNAGFIRSAKAPYEAPILFQKKKDVSLRLCIDYR
        +++ +KY +++ + LP       ++P    + H+IE+  GA+ P    Y +      ++ K + +LL+  FI  +K+P  +P++   KKD + RLC+DYR
Subjt:  LYILEKYHDVMPDSLP------KSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNAGFIRSAKAPYEAPILFQKKKDVSLRLCIDYR

Query:  TLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGLTNAFATFCMLMNQVFHEYLDKFVVVYLDDIV
        TLNK TI + +PL  I +L  R+  A+ F+ LDL SGY+Q+ +   D  KT +VT    +E+ VMPFGL NA +TF   M   F +   +FV VYLDDI+
Subjt:  TLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGLTNAFATFCMLMNQVFHEYLDKFVVVYLDDIV

Query:  VYSTTMEEHRDHL
        ++S + EEH  HL
Subjt:  VYSTTMEEHRDHL

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.9e-3438.03Show/hide
Query:  LYILEKYHDVMPDSLP------KSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNAGFIRSAKAPYEAPILFQKKKDVSLRLCIDYR
        +++ +KY +++ + LP       ++P    + H+IE+  GA+ P    Y +      ++ K + +LL+  FI  +K+P  +P++   KKD + RLC+DYR
Subjt:  LYILEKYHDVMPDSLP------KSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNAGFIRSAKAPYEAPILFQKKKDVSLRLCIDYR

Query:  TLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGLTNAFATFCMLMNQVFHEYLDKFVVVYLDDIV
        TLNK TI + +PL  I +L  R+  A+ F+ LDL SGY+Q+ +   D  KT +VT    +E+ VMPFGL NA +TF   M   F +   +FV VYLDDI+
Subjt:  TLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGLTNAFATFCMLMNQVFHEYLDKFVVVYLDDIV

Query:  VYSTTMEEHRDHL
        ++S + EEH  HL
Subjt:  VYSTTMEEHRDHL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTCGGCCATGCAATTAAAGAAGGGTCTTACTCAAGACGAACCAACATTTATGGCCATTCCACTTGATTCGTCGGAAAACCCAGGAGAGACAATCTCTAAGGATAT
TCTGTACATATTAGAGAAGTATCATGACGTGATGCCCGACAGTTTGCCCAAGTCCTTGCCACCTCGAAGGATGATTGATCATGAGATTGAGTTAGTGCTAGGAGCAAAAC
CGCCTGCGAAGAATGCTTATTGTATGGTGCCTCCGGAGTTAGCTAAACTTTGGAAACAACTAGATGAGTTATTGAATGCAGGGTTTATTAGGTCTGCAAAAGCTCCATAT
GAGGCCCCAATTCTTTTCCAGAAGAAAAAGGATGTGAGTTTACGATTGTGCATCGACTATCGTACCTTGAACAAGCTCACGATTTGCAACAAATATCCACTTTTCATAAT
TACTGATTTGTTTGATCGCTTACATAGGGCAAAGTATTTTTCAAAATTGGACTTGCGGTCGGGATACTACCAAGTGAGTATTGCAGAGGGAGACGAGCCTAAGACAACCT
ATGTCACCAGATTTAGAGCGTTTGAGTTCCTCGTAATGCCATTTGGTCTTACCAATGCCTTTGCAACCTTTTGTATGTTGATGAACCAGGTCTTCCATGAATATCTCGAC
AAGTTTGTAGTGGTCTACCTGGATGATATAGTGGTTTATAGCACAACAATGGAGGAACATAGAGACCATCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTTCGGCCATGCAATTAAAGAAGGGTCTTACTCAAGACGAACCAACATTTATGGCCATTCCACTTGATTCGTCGGAAAACCCAGGAGAGACAATCTCTAAGGATAT
TCTGTACATATTAGAGAAGTATCATGACGTGATGCCCGACAGTTTGCCCAAGTCCTTGCCACCTCGAAGGATGATTGATCATGAGATTGAGTTAGTGCTAGGAGCAAAAC
CGCCTGCGAAGAATGCTTATTGTATGGTGCCTCCGGAGTTAGCTAAACTTTGGAAACAACTAGATGAGTTATTGAATGCAGGGTTTATTAGGTCTGCAAAAGCTCCATAT
GAGGCCCCAATTCTTTTCCAGAAGAAAAAGGATGTGAGTTTACGATTGTGCATCGACTATCGTACCTTGAACAAGCTCACGATTTGCAACAAATATCCACTTTTCATAAT
TACTGATTTGTTTGATCGCTTACATAGGGCAAAGTATTTTTCAAAATTGGACTTGCGGTCGGGATACTACCAAGTGAGTATTGCAGAGGGAGACGAGCCTAAGACAACCT
ATGTCACCAGATTTAGAGCGTTTGAGTTCCTCGTAATGCCATTTGGTCTTACCAATGCCTTTGCAACCTTTTGTATGTTGATGAACCAGGTCTTCCATGAATATCTCGAC
AAGTTTGTAGTGGTCTACCTGGATGATATAGTGGTTTATAGCACAACAATGGAGGAACATAGAGACCATCTGTAA
Protein sequenceShow/hide protein sequence
MISAMQLKKGLTQDEPTFMAIPLDSSENPGETISKDILYILEKYHDVMPDSLPKSLPPRRMIDHEIELVLGAKPPAKNAYCMVPPELAKLWKQLDELLNAGFIRSAKAPY
EAPILFQKKKDVSLRLCIDYRTLNKLTICNKYPLFIITDLFDRLHRAKYFSKLDLRSGYYQVSIAEGDEPKTTYVTRFRAFEFLVMPFGLTNAFATFCMLMNQVFHEYLD
KFVVVYLDDIVVYSTTMEEHRDHL