; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0248211 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0248211
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr09:13504593..13505297
RNA-Seq ExpressionCmc09g0248211
SyntenyCmc09g0248211
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040942.1 pol protein [Cucumis melo var. makuwa]5.7e-11388.46Show/hide
Query:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW
        M FGLTNA A+FMDLMNMVFKDFLD+FVIVFIDDIL+YSKTEAEHEEHLHQVL TL ANKLYAKFFKCEFWL+KV+ LGHVVSSEGVSVDPAKIEAVT+W
Subjt:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA
        PRPSTVSE+RSFLGLAGYYRRFVE FS IASPLTQLTRK TPFVWSPAC+ SFQELKQKLV+ PVLTVPDGSG+FVIYSDASKK L CVLMQQGKVVAYA
Subjt:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA

Query:  SFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG
        S QLK HEQNYPTHDLELAAV+ ALKIWR YLYG
Subjt:  SFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG

KAA0062299.1 pol protein [Cucumis melo var. makuwa]3.1e-12799.57Show/hide
Query:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW
        MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW
Subjt:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA
        PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA
Subjt:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA

Query:  SFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG
        SFQLKSHEQNYPTHDL+LAAVIFALKIWRQYLYG
Subjt:  SFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG

KAA0063098.1 pol protein [Cucumis melo var. makuwa]1.3e-11288.03Show/hide
Query:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW
        M FGLTNA A+FMDLMN VFKDFLD+FVIVFIDDIL+YSKTEAEHEEHLHQVL TL ANKLYAKF KCEFWL+KV+ LGHVVSSEGVSVDPAKIEAVT+W
Subjt:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA
        PRPSTVSE+RSFLGLAGYYRRFVE FS IASPLTQLTRK TPFVWSPAC+ SFQELKQKLV+ PVLTVPDGSG+FVIYSDASKK L CVLMQQGKVVAYA
Subjt:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA

Query:  SFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG
        S QLK+HEQNYPTHDLELAAV+FALKIWR YLYG
Subjt:  SFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG

KAA0066469.1 pol protein [Cucumis melo var. makuwa]9.6e-11388.79Show/hide
Query:  FGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSWPR
        FGLTNA A+FMDLMN VFKDFLD+FVIVFIDDIL+YSKTEAEHEEHLHQVL TL ANKLYAKF KCEFWL+KV+ LGHVVSSEGVSVDPAKIEAVT+WPR
Subjt:  FGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSWPR

Query:  PSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYASF
        PSTVSE+RSFLGLAGYYRRFVE FS IASPLTQLTRKRTPFVWSPAC+ SFQELKQKLV+ PVLTVPDGSG+FVIYSDASKK L CVLMQQGKVVAYAS 
Subjt:  PSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYASF

Query:  QLKSHEQNYPTHDLELAAVIFALKIWRQYLYG
        QLK HEQNYPTHDLELAAV+FALKIWR YLYG
Subjt:  QLKSHEQNYPTHDLELAAVIFALKIWRQYLYG

TYK26678.1 pol protein [Cucumis melo var. makuwa]3.1e-12799.57Show/hide
Query:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW
        MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW
Subjt:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA
        PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA
Subjt:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA

Query:  SFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG
        SFQLKSHEQNYPTHDL+LAAVIFALKIWRQYLYG
Subjt:  SFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG

TrEMBL top hitse value%identityAlignment
A0A5A7TBV4 Pol protein2.7e-11388.46Show/hide
Query:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW
        M FGLTNA A+FMDLMNMVFKDFLD+FVIVFIDDIL+YSKTEAEHEEHLHQVL TL ANKLYAKFFKCEFWL+KV+ LGHVVSSEGVSVDPAKIEAVT+W
Subjt:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA
        PRPSTVSE+RSFLGLAGYYRRFVE FS IASPLTQLTRK TPFVWSPAC+ SFQELKQKLV+ PVLTVPDGSG+FVIYSDASKK L CVLMQQGKVVAYA
Subjt:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA

Query:  SFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG
        S QLK HEQNYPTHDLELAAV+ ALKIWR YLYG
Subjt:  SFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG

A0A5A7V9C3 Pol protein1.5e-12799.57Show/hide
Query:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW
        MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW
Subjt:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA
        PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA
Subjt:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA

Query:  SFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG
        SFQLKSHEQNYPTHDL+LAAVIFALKIWRQYLYG
Subjt:  SFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG

A0A5A7VBY3 Reverse transcriptase6.1e-11388.46Show/hide
Query:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW
        M FGLTNA A+FMDLMN VFKDFLD+FVIVFIDDIL+YSKTEAEHEEHLHQVL TL ANKLYAKF KCEFWL+KV+ LGHVVSSEGVSVDPAKIEAVT+W
Subjt:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA
        PRPSTVSE+RSFLGLAGYYRRFVE FS  ASPLTQLTRK TPFVWSPAC++SFQELKQKLV+ PVLTVPDGSGSFVIYSDASKK L CVLMQQGKVVAYA
Subjt:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA

Query:  SFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG
        S QLKSHEQNYPTHDLELAAV+FALKIWR+YLYG
Subjt:  SFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG

A0A5A7VMK1 Pol protein4.7e-11388.79Show/hide
Query:  FGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSWPR
        FGLTNA A+FMDLMN VFKDFLD+FVIVFIDDIL+YSKTEAEHEEHLHQVL TL ANKLYAKF KCEFWL+KV+ LGHVVSSEGVSVDPAKIEAVT+WPR
Subjt:  FGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSWPR

Query:  PSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYASF
        PSTVSE+RSFLGLAGYYRRFVE FS IASPLTQLTRKRTPFVWSPAC+ SFQELKQKLV+ PVLTVPDGSG+FVIYSDASKK L CVLMQQGKVVAYAS 
Subjt:  PSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYASF

Query:  QLKSHEQNYPTHDLELAAVIFALKIWRQYLYG
        QLK HEQNYPTHDLELAAV+FALKIWR YLYG
Subjt:  QLKSHEQNYPTHDLELAAVIFALKIWRQYLYG

A0A5D3DT36 Pol protein1.5e-12799.57Show/hide
Query:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW
        MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW
Subjt:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA
        PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA
Subjt:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYA

Query:  SFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG
        SFQLKSHEQNYPTHDL+LAAVIFALKIWRQYLYG
Subjt:  SFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.63.5e-4138.3Show/hide
Query:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW
        M FGL NA A F   MN + +  L+   +V++DDI+V+S +  EH + L  V   L    L  +  KCEF  ++ + LGHV++ +G+  +P KIEA+  +
Subjt:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPF-VWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAY
        P P+   E+++FLGL GYYR+F+  F+ IA P+T+  +K       +P   ++F++LK  +   P+L VPD +  F + +DAS   L  VL Q G  ++Y
Subjt:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPF-VWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAY

Query:  ASFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG
         S  L  HE NY T + EL A+++A K +R YL G
Subjt:  ASFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG

P0CT41 Transposon Tf2-12 polyprotein1.1e-3133.33Show/hide
Query:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW
        M +G++ A A F   +N +  +  ++ V+ ++DDIL++SK+E+EH +H+  VL+ L    L     KCEF   +V  +G+ +S +G +     I+ V  W
Subjt:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGK-----
         +P    E+R FLG   Y R+F+   S +  PL  L +K   + W+P    + + +KQ LVS PVL   D S   ++ +DAS   +  VL Q+       
Subjt:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGK-----

Query:  VVAYASFQLKSHEQNYPTHDLELAAVIFALKIWRQYL
         V Y S ++   + NY   D E+ A+I +LK WR YL
Subjt:  VVAYASFQLKSHEQNYPTHDLELAAVIFALKIWRQYL

P10401 Retrovirus-related Pol polyprotein from transposon gypsy4.0e-3735.25Show/hide
Query:  FGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSWPR
        FGL NAS+IF   ++ V ++ +     V++DD++++S+ E++H  H+  VL+ L    +     K  F+ + V  LG +VS +G   DP K++A+  +P 
Subjt:  FGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSWPR

Query:  PSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTR-----------KRTPFVWSPACKTSFQELKQKLVSTPV-LTVPDGSGSFVIYSDASKKRLVCVL
        P  V +VRSFLGLA YYR F++ F++IA P+T + +           K+ P  ++   + +FQ L+  L S  V L  PD    F + +DAS   +  VL
Subjt:  PSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTR-----------KRTPFVWSPACKTSFQELKQKLVSTPV-LTVPDGSGSFVIYSDASKKRLVCVL

Query:  MQQGKVVAYASFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG
         Q+G+ +   S  LK  EQNY T++ EL A+++AL   + +LYG
Subjt:  MQQGKVVAYASFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG

P20825 Retrovirus-related Pol polyprotein from transposon 2976.0e-4137.02Show/hide
Query:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW
        M FGL NA A F   MN + +  L+   +V++DDI+++S +  EH   +  V   L    L  +  KCEF  K+ + LGH+V+ +G+  +P K++A+ S+
Subjt:  MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPF-VWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAY
        P P+   E+R+FLGL GYYR+F+  ++ IA P+T   +KRT           +F++LK  ++  P+L +PD    FV+ +DAS   L  VL Q G  +++
Subjt:  PRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPF-VWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAY

Query:  ASFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG
         S  L  HE NY   + EL A+++A K +R YL G
Subjt:  ASFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus8.4e-3533.6Show/hide
Query:  FGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSWPR
        FGL NA AIF  +++ + ++ +     V+IDDI+V+S+    H ++L  VL +L    L     K  F   +V  LG++V+++G+  DP K+ A++  P 
Subjt:  FGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSWPR

Query:  PSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTR-----------KRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLM
        P++V E++ FLG+  YYR+F++ ++ +A PLT LTR            + P         SF +LK  L S+ +L  P  +  F + +DAS   +  VL 
Subjt:  PSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTR-----------KRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLM

Query:  Q----QGKVVAYASFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG
        Q    + + +AY S  L   E+NY T + E+ A+I++L   R YLYG
Subjt:  Q----QGKVVAYASFQLKSHEQNYPTHDLELAAVIFALKIWRQYLYG

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein6.2e-2542.75Show/hide
Query:  HLHQVLRTLGANKLYAKFFKCEFWLKKVSILG--HVVSSEGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVW
        HL  VL+    ++ YA   KC F   +++ LG  H++S EGVS DPAK+EA+  WP P   +E+R FLGL GYYRRFV+ +  I  PLT+L +K +   W
Subjt:  HLHQVLRTLGANKLYAKFFKCEFWLKKVSILG--HVVSSEGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVW

Query:  SPACKTSFQELKQKLVSTPVLTVPDGSGSFV
        +     +F+ LK  + + PVL +PD    FV
Subjt:  SPACKTSFQELKQKLVSTPVLTVPDGSGSFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTTGGTTTAACTAATGCTTCTGCCATATTCATGGACTTGATGAACATGGTGTTTAAGGATTTCTTAGACACGTTTGTTATAGTTTTTATTGACGATATCTTGGT
TTACTCCAAAACAGAGGCCGAACATGAGGAACATTTGCATCAAGTTTTGAGGACTCTTGGAGCTAATAAGTTATATGCCAAGTTTTTCAAGTGTGAGTTCTGGCTGAAGA
AGGTATCCATTCTTGGACATGTGGTGTCTAGCGAGGGAGTTTCTGTAGACCCAGCAAAGATTGAAGCTGTTACTAGTTGGCCTCGACCGTCTACAGTCAGCGAGGTTCGT
AGTTTTCTGGGTCTAGCAGGTTATTATAGGAGGTTCGTGGAAGGCTTCTCTAGTATAGCTAGTCCCTTGACTCAGTTGACCAGGAAGAGGACTCCGTTTGTTTGGAGCCC
AGCTTGTAAGACTAGTTTCCAAGAGCTTAAGCAGAAGCTTGTGTCTACACCAGTCCTTACAGTACCAGATGGATCTGGGAGCTTTGTAATCTACAGTGATGCCTCTAAGA
AAAGACTGGTTTGTGTTTTGATGCAGCAGGGAAAGGTAGTTGCTTATGCCTCCTTTCAGTTGAAGAGTCACGAGCAGAACTACCCTACTCACGACTTGGAGTTGGCAGCA
GTAATTTTTGCATTGAAGATATGGAGACAATACTTGTATGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTTGGTTTAACTAATGCTTCTGCCATATTCATGGACTTGATGAACATGGTGTTTAAGGATTTCTTAGACACGTTTGTTATAGTTTTTATTGACGATATCTTGGT
TTACTCCAAAACAGAGGCCGAACATGAGGAACATTTGCATCAAGTTTTGAGGACTCTTGGAGCTAATAAGTTATATGCCAAGTTTTTCAAGTGTGAGTTCTGGCTGAAGA
AGGTATCCATTCTTGGACATGTGGTGTCTAGCGAGGGAGTTTCTGTAGACCCAGCAAAGATTGAAGCTGTTACTAGTTGGCCTCGACCGTCTACAGTCAGCGAGGTTCGT
AGTTTTCTGGGTCTAGCAGGTTATTATAGGAGGTTCGTGGAAGGCTTCTCTAGTATAGCTAGTCCCTTGACTCAGTTGACCAGGAAGAGGACTCCGTTTGTTTGGAGCCC
AGCTTGTAAGACTAGTTTCCAAGAGCTTAAGCAGAAGCTTGTGTCTACACCAGTCCTTACAGTACCAGATGGATCTGGGAGCTTTGTAATCTACAGTGATGCCTCTAAGA
AAAGACTGGTTTGTGTTTTGATGCAGCAGGGAAAGGTAGTTGCTTATGCCTCCTTTCAGTTGAAGAGTCACGAGCAGAACTACCCTACTCACGACTTGGAGTTGGCAGCA
GTAATTTTTGCATTGAAGATATGGAGACAATACTTGTATGGTTAG
Protein sequenceShow/hide protein sequence
MFFGLTNASAIFMDLMNMVFKDFLDTFVIVFIDDILVYSKTEAEHEEHLHQVLRTLGANKLYAKFFKCEFWLKKVSILGHVVSSEGVSVDPAKIEAVTSWPRPSTVSEVR
SFLGLAGYYRRFVEGFSSIASPLTQLTRKRTPFVWSPACKTSFQELKQKLVSTPVLTVPDGSGSFVIYSDASKKRLVCVLMQQGKVVAYASFQLKSHEQNYPTHDLELAA
VIFALKIWRQYLYG