| GenBank top hits | e value | %identity | Alignment |
|---|
| ADJ18449.1 gag/pol protein, partial [Bryonia dioica] | 1.1e-91 | 84.47 | Show/hide |
Query: MFRIAETQNKRQKVSSNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYF
MFR ETQNK+QKVSSNA+LW+LRLGHINLNRI RLVKSG+L+QLEDNSLP C+S LEGKMTKRSFTGK LRAK PLELVHSDLCGPMNVKARGGY EYF
Subjt: MFRIAETQNKRQKVSSNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYF
Query: ISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMGFA
ISFIDD+SRYGHVYL+ +KS+SFEKFKE AEVENE GKTIKTLRSDRGGEYMD +FQDYLIE GIQSQL AP+TPQ NG+SERRNRTLLDMV SMM +A
Subjt: ISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMGFA
Query: QLPDSF
QLPDSF
Subjt: QLPDSF
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| KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa] | 1.0e-81 | 75.48 | Show/hide |
Query: MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDE
MFR A TQNKRQ++S +N +LW+LRLGHINL+RIGRLVK+GLL++L+D SLP C+S LEGKMTKR FTGK RAK PLEL+HSDLCGPMNVKARGG+ E
Subjt: MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDE
Query: YFISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG
YFISFIDDYSRYG++YL+++KS++ EKFKE EVEN K IK LRSDRGGEYMDLRFQDY+IEHGIQSQL AP TPQ NG+SERRNRTLLDMV SMM
Subjt: YFISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG
Query: FAQLPDSF
+AQLP SF
Subjt: FAQLPDSF
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| KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa] | 1.6e-79 | 74.04 | Show/hide |
Query: MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDE
MFR A TQNKRQ++S +N +LW+LRLGHINL+RIGRLVK GLL++L+D SLP C+S LEGKMTKR FTGK RAK PLEL+HSDLCGPMNVKARG + E
Subjt: MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDE
Query: YFISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG
YFISFIDDYSRYG++YL+++KS++ EKFKE EVEN K IK RSDRGGEYMDL FQDY+IEHGIQSQL AP TPQ NG+SERRNRTLLDMV SMM
Subjt: YFISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG
Query: FAQLPDSF
+AQLP SF
Subjt: FAQLPDSF
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| KAA0060534.1 gag/pol protein [Cucumis melo var. makuwa] | 2.9e-81 | 75.48 | Show/hide |
Query: MFRIAETQNKRQKVSS--NAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDE
MFR A TQNKRQ++SS N +LW+LRLGHINL+RIGRLVK+GLL++LED+SLP C+S LEGKMTKR FTGK RAK PLEL+HSDLCGPMNVKA GG+ E
Subjt: MFRIAETQNKRQKVSS--NAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDE
Query: YFISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG
YFISFIDDYS YG++YLI++KS++ EKFKE EVEN K IK LRSDRGGEYMDLRFQDY+IEHGIQSQL AP TPQ NG+SERRNRTLLDMV SMM
Subjt: YFISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG
Query: FAQLPDSF
+ QLP SF
Subjt: FAQLPDSF
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| KAA0067938.1 gag/pol protein [Cucumis melo var. makuwa] | 1.1e-80 | 74.52 | Show/hide |
Query: MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDE
MFR A TQNKRQ++S +N +LW+LRL HINL+RIGRLVK+GLL++L+D+SLP C+S LEGKMTKR FTGK RAK PLEL+HSDLCGPMNVKARGG+ E
Subjt: MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDE
Query: YFISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG
YFISFIDDYSRYG++YL+++K ++ EKFKE EVEN K IK LRSDRGGEYMDLRFQDY+IEHGIQSQL AP TPQ NG+SERRNRTLLDMV SMM
Subjt: YFISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG
Query: FAQLPDSF
+AQLP SF
Subjt: FAQLPDSF
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7T2V9 Gag/pol protein | 7.7e-80 | 74.04 | Show/hide |
Query: MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDE
MFR A TQNKRQ++S +N +LW+LRLGHINL+RIGRLVK GLL++L+D SLP C+S LEGKMTKR FTGK RAK PLEL+HSDLCGPMNVKARG + E
Subjt: MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDE
Query: YFISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG
YFISFIDDYSRYG++YL+++KS++ EKFKE EVEN K IK RSDRGGEYMDL FQDY+IEHGIQSQL AP TPQ NG+SERRNRTLLDMV SMM
Subjt: YFISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG
Query: FAQLPDSF
+AQLP SF
Subjt: FAQLPDSF
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| A0A5A7TZD0 Gag/pol protein | 4.9e-82 | 75.48 | Show/hide |
Query: MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDE
MFR A TQNKRQ++S +N +LW+LRLGHINL+RIGRLVK+GLL++L+D SLP C+S LEGKMTKR FTGK RAK PLEL+HSDLCGPMNVKARGG+ E
Subjt: MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDE
Query: YFISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG
YFISFIDDYSRYG++YL+++KS++ EKFKE EVEN K IK LRSDRGGEYMDLRFQDY+IEHGIQSQL AP TPQ NG+SERRNRTLLDMV SMM
Subjt: YFISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG
Query: FAQLPDSF
+AQLP SF
Subjt: FAQLPDSF
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| A0A5A7VJG3 Gag/pol protein | 5.4e-81 | 74.52 | Show/hide |
Query: MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDE
MFR A TQNKRQ++S +N +LW+LRL HINL+RIGRLVK+GLL++L+D+SLP C+S LEGKMTKR FTGK RAK PLEL+HSDLCGPMNVKARGG+ E
Subjt: MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDE
Query: YFISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG
YFISFIDDYSRYG++YL+++K ++ EKFKE EVEN K IK LRSDRGGEYMDLRFQDY+IEHGIQSQL AP TPQ NG+SERRNRTLLDMV SMM
Subjt: YFISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG
Query: FAQLPDSF
+AQLP SF
Subjt: FAQLPDSF
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| A0A5D3BNE1 Gag/pol protein | 1.4e-81 | 75.48 | Show/hide |
Query: MFRIAETQNKRQKVSS--NAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDE
MFR A TQNKRQ++SS N +LW+LRLGHINL+RIGRLVK+GLL++LED+SLP C+S LEGKMTKR FTGK RAK PLEL+HSDLCGPMNVKA GG+ E
Subjt: MFRIAETQNKRQKVSS--NAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDE
Query: YFISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG
YFISFIDDYS YG++YLI++KS++ EKFKE EVEN K IK LRSDRGGEYMDLRFQDY+IEHGIQSQL AP TPQ NG+SERRNRTLLDMV SMM
Subjt: YFISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG
Query: FAQLPDSF
+ QLP SF
Subjt: FAQLPDSF
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| E2GK51 Gag/pol protein (Fragment) | 5.2e-92 | 84.47 | Show/hide |
Query: MFRIAETQNKRQKVSSNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYF
MFR ETQNK+QKVSSNA+LW+LRLGHINLNRI RLVKSG+L+QLEDNSLP C+S LEGKMTKRSFTGK LRAK PLELVHSDLCGPMNVKARGGY EYF
Subjt: MFRIAETQNKRQKVSSNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYF
Query: ISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMGFA
ISFIDD+SRYGHVYL+ +KS+SFEKFKE AEVENE GKTIKTLRSDRGGEYMD +FQDYLIE GIQSQL AP+TPQ NG+SERRNRTLLDMV SMM +A
Subjt: ISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMGFA
Query: QLPDSF
QLPDSF
Subjt: QLPDSF
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 3.2e-22 | 34.8 | Show/hide |
Query: KVSSNAFLWNLRLGHIN------LNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKT----PLELVHSDLCGPMNVKARGGYDEYFIS
K +N LW+ R GHI+ + R LL+ LE S C+ L GK + F K L+ KT PL +VHSD+CGP+ YF+
Subjt: KVSSNAFLWNLRLGHIN------LNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKT----PLELVHSDLCGPMNVKARGGYDEYFIS
Query: FIDDYSRYGHVYLIQNKSDSFEKFKEAEVENESGKTIKT--LRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMGFAQL
F+D ++ Y YLI+ KSD F F++ ++E+ +K L D G EY+ + + ++ GI L P+TPQ NG+SER RT+ + +M+ A+L
Subjt: FIDDYSRYGHVYLIQNKSDSFEKFKEAEVENESGKTIKT--LRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMGFAQL
Query: PDSF
SF
Subjt: PDSF
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.4e-38 | 43.32 | Show/hide |
Query: LWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQNK
LW+ R+GH++ + L K L+S + ++ CD L GK + SF S R L+LV+SD+CGPM +++ GG ++YF++FIDD SR VY+++ K
Subjt: LWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQNK
Query: SDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMGFAQLPDSF
F+ F++ A VE E+G+ +K LRSD GGEY F++Y HGI+ + P TPQHNG++ER NRT+++ V SM+ A+LP SF
Subjt: SDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMGFAQLPDSF
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| Q07791 Transposon Ty2-DR3 Gag-Pol polyprotein | 8.7e-12 | 25.71 | Show/hide |
Query: NKRQKVSSNAF-LWNLRLGHINLNRIGRLVKSGLLSQLEDNSLP-------SCDSFLEGKMTK-RSFTGKSLR---AKTPLELVHSDLCGPMNVKARGGY
NK + V+ + L + LGH N I + +K ++ L+++ + C L GK TK R G L+ + P + +H+D+ GP++ +
Subjt: NKRQKVSSNAF-LWNLRLGHINLNRIGRLVKSGLLSQLEDNSLP-------SCDSFLEGKMTK-RSFTGKSLR---AKTPLELVHSDLCGPMNVKARGGY
Query: DEYFISFIDDYSRYGHVYLIQNKSDS--FEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVC
YFISF D+ +R+ VY + ++ + F A ++N+ + ++ DRG EY + + GI + + +G++ER NRTLL+
Subjt: DEYFISFIDDYSRYGHVYLIQNKSDS--FEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVC
Query: SMMGFAQLPD
+++ + LP+
Subjt: SMMGFAQLPD
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.6e-18 | 30.32 | Show/hide |
Query: WNLRLGHINLNRIGRLVKSGLLSQLE-DNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQNK
W+ RLGH + + ++ + LS L + SC L K K F+ ++ + PLE ++SD+ + + Y Y++ F+D ++RY +Y ++ K
Subjt: WNLRLGHINLNRIGRLVKSGLLSQLE-DNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQNK
Query: S---DSFEKFKEAEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMGFAQLPDSF
S ++F FK +EN I T SD GGE++ L +Y +HGI P+TP+HNG+SER++R +++ +++ A +P ++
Subjt: S---DSFEKFKEAEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMGFAQLPDSF
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.6e-21 | 34.04 | Show/hide |
Query: WNLRLGHINLNRIGRLVKSGLLSQLE-DNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQNK
W+ RLGH +L + ++ + L L + L SC K K F+ ++ + PLE ++SD+ + + Y Y++ F+D ++RY +Y ++ K
Subjt: WNLRLGHINLNRIGRLVKSGLLSQLE-DNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQNK
Query: S---DSFEKFKEAEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMGFAQLPDSF
S D+F FK VEN I TL SD GGE++ LR DYL +HGI P+TP+HNG+SER++R +++M +++ A +P ++
Subjt: S---DSFEKFKEAEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMGFAQLPDSF
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