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Cmc09g0248541 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0248541
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibonuclease H
Genome locationCMiso1.1chr09:14141247..14141762
RNA-Seq ExpressionCmc09g0248541
SyntenyCmc09g0248541
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036942.1 uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa]1.4e-8995.32Show/hide
Query:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD
        M GLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTV KYPEWVAN+VPV KKDGKVRMC+DYRDLNRASPKDNF LPHIDMLVD
Subjt:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD

Query:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI
        NTA YSTFSFMDGFSGYNQIKMA+EDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI
Subjt:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]7.1e-8993.57Show/hide
Query:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD
        MPGL+TDIVVHRVPLKPECNPVRQKLRKMKPD+LIK+KEEVQKQIEAGFL V KYPEWVAN+VPV KKDGKVRMCVDYRDLNRASPKDNF LPHIDMLVD
Subjt:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD

Query:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI
        NTA YSTFSFMDGFSGYNQIKMA+EDREKTTFITLWGTFCYKVMPFGLKN GATYQRAMVTLFHDMMHKEI
Subjt:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI

XP_031738857.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]7.1e-8993.57Show/hide
Query:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD
        MPGL+TDIVVHRVPLKPECNPVRQKLRKMKPD+LIK+KEEVQKQIEAGFL V KYPEWVAN+VPV KKDGKVRMCVDYRDLNRASPKDNF LPHIDMLVD
Subjt:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD

Query:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI
        NTA YSTFSFMDGFSGYNQIKMA+EDREKTTFITLWGTFCYKVMPFGLKN GATYQRAMVTLFHDMMHKEI
Subjt:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI

XP_031739260.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402917 [Cucumis sativus]6.4e-9094.74Show/hide
Query:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD
        MPGL+TDIVVHRVPLKPECNPVRQKLRKMKPD+LIKIKEEVQKQIEAGFLTV KYPEWVAN+VPV KKDGKVRMCVDYRDLNRASPKDNF LPHIDMLVD
Subjt:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD

Query:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI
        NTA YSTFSFMDGFSGYNQIKMA+EDREKTTFITLWGTFCYKVMPFGLKN GATYQRAMVTLFHDMMHKEI
Subjt:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI

XP_031741309.1 LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus]7.1e-8993.57Show/hide
Query:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD
        MPGL+TDIVVHRVPLKPECNPVRQKLRKMKPD+LIK+KEEVQKQIEAGFL V KYPEWVAN+VPV KKDGKVRMCVDYRDLNRASPKDNF LPHIDMLVD
Subjt:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD

Query:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI
        NTA YSTFSFMDGFSGYNQIKMA+EDREKTTFITLWGTFCYKVMPFGLKN GATYQRAMVTLFHDMMHKEI
Subjt:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI

TrEMBL top hitse value%identityAlignment
A0A5A7T0H8 Uncharacterized protein6.9e-9095.32Show/hide
Query:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD
        M GLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTV KYPEWVAN+VPV KKDGKVRMC+DYRDLNRASPKDNF LPHIDMLVD
Subjt:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD

Query:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI
        NTA YSTFSFMDGFSGYNQIKMA+EDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI
Subjt:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI

A0A5A7T3U9 Protein NYNRIN-like7.4e-8491.23Show/hide
Query:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD
        MPGLSTDIVVHRVPLK ECN VRQKLRKMKPDVLIKIKEEVQK+IEAGFLTV KYPEWV N+VPV KKD KVRMCVD RDLNRASPKDNF LPHIDMLVD
Subjt:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD

Query:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI
        NTA YSTFSFMDGFSGYNQIKMA+E REKTTFITLWGTFCYKV+PFGLKN GATYQRAMVTLFHDMMHKEI
Subjt:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI

A0A5A7VK41 Reverse transcriptase domain-containing protein6.5e-8894.15Show/hide
Query:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD
        M GLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVAN+VPV KKDGKVRMCVDYRDLNRASPKDN  LPHIDMLV+
Subjt:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD

Query:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI
        NTA YSTFSFMDGFSGYNQIKMA+EDREK TFITLWGTF YKVMPFGLKNVGATYQRAMVTLFHDMMHKEI
Subjt:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI

A0A5D3BDT6 Protein NYNRIN-like6.7e-8590.64Show/hide
Query:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD
        MPGL+T+IVVHRVPLKPECNPVRQKLRKMK DVLIKIKEEVQKQIEA FLT+ KYP+WVAN++ V KKDGKVRMCVDYRDLNRASPKDNF LPHIDMLVD
Subjt:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD

Query:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI
        NTA YSTFSFMDGF GYNQIKMAKEDREKTTFITLWGTFCYKVMPFG KN GATYQRAMVTLFHDMMHKEI
Subjt:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI

A0A5D3DA63 Protein NYNRIN-like7.4e-8491.23Show/hide
Query:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD
        MPGLSTDIVVHRVPLK ECN VRQKLRKMKPDVLIKIKEEVQK+IEAGFLTV KYPEWV N+VPV KKD KVRMCVD RDLNRASPKDNF LPHIDMLVD
Subjt:  MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVD

Query:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI
        NTA YSTFSFMDGFSGYNQIKMA+E REKTTFITLWGTFCYKV+PFGLKN GATYQRAMVTLFHDMMHKEI
Subjt:  NTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.3e-1329.71Show/hide
Query:  KIKEEVQKQIEAGFL----TVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVDNTAEYSTFSFMDGFSGYNQIKMAKEDREKTT
        +++ ++Q  +  G +    + +  P WV      +    K R+ +DYR LN  +  D   +P++D ++      + F+ +D   G++QI+M  E   KT 
Subjt:  KIKEEVQKQIEAGFL----TVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVDNTAEYSTFSFMDGFSGYNQIKMAKEDREKTT

Query:  FITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHK
        F T  G + Y  MPFGLKN  AT+QR M  +   +++K
Subjt:  FITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHK

P20825 Retrovirus-related Pol polyprotein from transposon 2978.3e-1629.22Show/hide
Query:  NPVRQKLRKMKPDVLIKIKEEVQKQIEAGFL----TVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVDNTAEYSTFSFMDGFS
        +P+  K   +     I+++ +VQ+ +  G +    + +  P WV    P +    K R+ +DYR LN  +  D + +P++D ++    +   F+ +D   
Subjt:  NPVRQKLRKMKPDVLIKIKEEVQKQIEAGFL----TVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVDNTAEYSTFSFMDGFS

Query:  GYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHK
        G++QI+M +E   KT F T  G + Y  MPFGL+N  AT+QR M  +   +++K
Subjt:  GYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHK

P31843 RNA-directed DNA polymerase homolog1.4e-1539.58Show/hide
Query:  VRMCVDYRDLNRASPKDNFLLPHIDMLVDNTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMM
        +RMC+DYR L + + K+ + +P +D L D  A+ + F+ +D  SGY Q+++AK D  KTT +T +G+F ++VMPFGL N  AT+   M  + ++ +
Subjt:  VRMCVDYRDLNRASPKDNFLLPHIDMLVDNTAEYSTFSFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMM

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein7.8e-2239.87Show/hide
Query:  VVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVDNTAEYSTF
        V H + +KP     R +   +      +I + VQK ++  F+   K P   + VV V KKDG  R+CVDYR LN+A+  D F LP ID L+        F
Subjt:  VVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVDNTAEYSTF

Query:  SFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDM
        + +D  SGY+QI M  +DR KT F+T  G + Y VMPFGL N  +T+ R M   F D+
Subjt:  SFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDM

Q99315 Transposon Ty3-G Gag-Pol polyprotein7.8e-2239.87Show/hide
Query:  VVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVDNTAEYSTF
        V H + +KP     R +   +      +I + VQK ++  F+   K P   + VV V KKDG  R+CVDYR LN+A+  D F LP ID L+        F
Subjt:  VVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVDNTAEYSTF

Query:  SFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDM
        + +D  SGY+QI M  +DR KT F+T  G + Y VMPFGL N  +T+ R M   F D+
Subjt:  SFMDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDM

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGGATTAAGTACGGATATTGTTGTACACCGAGTTCCTTTAAAACCAGAATGCAACCCAGTGAGACAAAAGCTACGTAAAATGAAACCTGATGTACTGATTAAAAT
AAAGGAGGAAGTACAGAAGCAAATTGAAGCAGGATTCCTCACAGTCTTCAAATATCCTGAATGGGTGGCAAACGTTGTTCCAGTATCAAAAAAAGACGGAAAAGTGAGAA
TGTGTGTGGACTATAGAGATTTAAATCGAGCCAGTCCAAAAGATAACTTCCTTTTACCTCATATCGACATGTTGGTGGATAATACTGCAGAATACTCAACTTTCTCCTTC
ATGGATGGTTTTTCCGGATATAATCAGATCAAAATGGCTAAAGAAGATAGAGAAAAAACGACATTCATTACCCTTTGGGGAACATTCTGCTACAAAGTAATGCCTTTTGG
TTTGAAAAATGTTGGGGCAACCTATCAACGAGCAATGGTTACACTTTTTCATGATATGATGCATAAAGAAATATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAGGATTAAGTACGGATATTGTTGTACACCGAGTTCCTTTAAAACCAGAATGCAACCCAGTGAGACAAAAGCTACGTAAAATGAAACCTGATGTACTGATTAAAAT
AAAGGAGGAAGTACAGAAGCAAATTGAAGCAGGATTCCTCACAGTCTTCAAATATCCTGAATGGGTGGCAAACGTTGTTCCAGTATCAAAAAAAGACGGAAAAGTGAGAA
TGTGTGTGGACTATAGAGATTTAAATCGAGCCAGTCCAAAAGATAACTTCCTTTTACCTCATATCGACATGTTGGTGGATAATACTGCAGAATACTCAACTTTCTCCTTC
ATGGATGGTTTTTCCGGATATAATCAGATCAAAATGGCTAAAGAAGATAGAGAAAAAACGACATTCATTACCCTTTGGGGAACATTCTGCTACAAAGTAATGCCTTTTGG
TTTGAAAAATGTTGGGGCAACCTATCAACGAGCAATGGTTACACTTTTTCATGATATGATGCATAAAGAAATATAG
Protein sequenceShow/hide protein sequence
MPGLSTDIVVHRVPLKPECNPVRQKLRKMKPDVLIKIKEEVQKQIEAGFLTVFKYPEWVANVVPVSKKDGKVRMCVDYRDLNRASPKDNFLLPHIDMLVDNTAEYSTFSF
MDGFSGYNQIKMAKEDREKTTFITLWGTFCYKVMPFGLKNVGATYQRAMVTLFHDMMHKEI