CuGenDBv2

Gene ID	Cmc09g0248841
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Lipoyl synthase, chloroplastic
Genome location	CMiso1.1chr09:14422112..14422891
RNA-Seq Expression	Cmc09g0248841
Synteny	Cmc09g0248841
Gene Ontology terms	GO:0009107 - lipoate biosynthetic process (biological process) GO:0009249 - protein lipoylation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0016992 - lipoate synthase activity (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR003698 - Lipoyl synthase

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6573763.1 Lipoyl synthase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

3.1e-30

83.33

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Query:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDDIP+GGSGHFAQT     ELK  IMVECLT DFRGDLK VETLVHSGLDVFAHN+ETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

XP_008445908.1 PREDICTED: lipoyl synthase, chloroplastic [Cucumis melo]

2.4e-30

84.52

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Query:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDDIP+GGSGHFAQT     ELK  IMVECLT DFRGDLK VETLVHSGLDVFAHNIETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

XP_022945153.1 lipoyl synthase, chloroplastic [Cucurbita moschata]

3.1e-30

83.33

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Query:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDDIP+GGSGHFAQT     ELK  IMVECLT DFRGDLK VETLVHSGLDVFAHN+ETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

XP_023541459.1 lipoyl synthase, chloroplastic [Cucurbita pepo subsp. pepo]

3.1e-30

83.33

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Query:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDDIP+GGSGHFAQT     ELK  IMVECLT DFRGDLK VETLVHSGLDVFAHN+ETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

XP_038893417.1 lipoyl synthase, chloroplastic-like [Benincasa hispida]

2.4e-30

84.52

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Query:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDDIP+GGSGHFAQT     ELK  IMVECLT DFRGDLK VETLVHSGLDVFAHNIETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPN0 Lipoyl synthase, chloroplastic

1.5e-30

83.33

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Query:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDDIP+GGSGHFAQT     ELK  IMVECLT DFRGDLK VETLVHSGLDVFAHN+ETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

A0A1S3BDA7 Lipoyl synthase, chloroplastic

1.1e-30

84.52

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Query:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDDIP+GGSGHFAQT     ELK  IMVECLT DFRGDLK VETLVHSGLDVFAHNIETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

A0A5D3CZE8 Lipoyl synthase, chloroplastic

1.1e-30

84.52

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Query:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDDIP+GGSGHFAQT     ELK  IMVECLT DFRGDLK VETLVHSGLDVFAHNIETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

A0A6J1G009 Lipoyl synthase, chloroplastic

1.5e-30

83.33

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Query:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDDIP+GGSGHFAQT     ELK  IMVECLT DFRGDLK VETLVHSGLDVFAHN+ETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

A0A6J1HVC4 Lipoyl synthase, chloroplastic

1.5e-30

83.33

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Query:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDDIP+GGSGHFAQT     ELK  IMVECLT DFRGDLK VETLVHSGLDVFAHN+ETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

SwissProt top hits

e value

%identity

Alignment

B8AA76 Lipoyl synthase 1, chloroplastic

1.6e-29

73.81

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Query:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDY+VLT+VDRDD+P+GGS HFAQT     ELK GI+VECLT DFRGDL+ V  L +SGLDVFAHNIETV+ LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

B9I666 Lipoyl synthase 1, chloroplastic

2.6e-32

79.76

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Query:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIV+T+VDRDD+P+GGSGHFAQT     ELK  IMVECLT DFRGDLK V+TLVHSGLDVFAHN+ETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

B9N2B0 Lipoyl synthase 2, chloroplastic

2.2e-31

78.57

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Query:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIV+T+VDRDD+ +GGSGHFAQT     ELK  IMVECLT DFRGDLK V+TLVHSGLDVFAHN+ETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

B9RX57 Lipoyl synthase, chloroplastic

2.2e-31

78.57

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Query:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIVLT+VDRDD+P+GGSGHF++T     +LK  IMVECLT DFRGDL+ VETLVHSGLDVFAHNIETVK LQRIV+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

Q8LEE8 Lipoyl synthase, chloroplastic

1.9e-30

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Query:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIV+T+VDRDDIP+GGSGHFAQT       K  IM+ECLT DFRGDL+ V+TLVHSGLDVFAHN+ETVK LQR+V+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

Arabidopsis top hits

e value

%identity

Alignment

AT2G20860.1 lipoic acid synthase 1

3.1e-20

57.83

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Query:  GVDYIVLTTVDRDDIPNGGSGHFAQTE-----LKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRA
        GVDY+V+T+VDRDD+P+ GSGHFA+T      LK  +++E L  DFRGD   VE +  SGLDV AHNIETV+ LQ  V+D RA
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQTE-----LKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRA

AT5G08415.1 Radical SAM superfamily protein

1.3e-31

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Query:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG
        GVDYIV+T+VDRDDIP+GGSGHFAQT       K  IM+ECLT DFRGDL+ V+TLVHSGLDVFAHN+ETVK LQR+V+DPRAG
Subjt:  GVDYIVLTTVDRDDIPNGGSGHFAQT-----ELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG

Sequences

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CDS sequence

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ATGTTCTCTTCTACTTGTTTTATTAATGGTGTGGATTACATCGTCTTAACAACTGTAGACCGTGATGATATTCCTAATGGAGGAAGTGGGCATTTTGCTCAAACAGAACT
TAAGCTCGGGATAATGGTTGAATGCTTAACTTTTGATTTCCGAGGTGACTTAAAGGTTGTGGAGACTCTTGTTCACTCAGGGTTAGATGTATTTGCTCACAATATTGAGA
CTGTGAAATGGCTTCAAAGAATTGTTAAAGATCCTCGAGCTGGGCTGTTACATTGGTAG

mRNA sequence

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Protein sequence

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MFSSTCFINGVDYIVLTTVDRDDIPNGGSGHFAQTELKLGIMVECLTFDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAGLLHW

Cmc09g0248841 (gene) of Melon (Charmono) v1.1 genome