| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0036643.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 5.9e-75 | 86.14 | Show/hide |
Query: MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVM
MHDPE IVSE PV+E VDT NL CELE RRSKRQRTEKSFGPDFLSTFIV+RRDEIDCNFTNLFLI+ED KTYQEALNSV+S MWKEAIKSELDSL M
Subjt: MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVM
Query: NHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIR
NHTW+LV+LPMGNKPIRCKWIFKRK KPNG IERYKARL+VVGYTQKQ +DYFDTYSP+TKITTIR
Subjt: NHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIR
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| KAA0038001.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 4.5e-75 | 88.68 | Show/hide |
Query: MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVM
MHDPEN SIVSET V+E V+TSNLRCELELRRSKRQRTEKSF PDFLSTFIV+RRDEID NFTNL+LIDEDPKTYQE LNSVE SMWKEAIKSELDSLVM
Subjt: MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVM
Query: NHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPI
NHTWDLV+LPMGNKPIRC+WIFKRK KPNGS+ERYKARL+VVGYTQKQ IDYFDTYSP+
Subjt: NHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPI
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| KAA0042080.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 4.6e-80 | 90.48 | Show/hide |
Query: MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVM
MHDPEN SIVSE PV+ETVDTSNLRCELELRRSKRQRTEKSFG DFLSTFIV+RRDEID NFTNL+LIDEDPKTYQEALNSV+ SMWKEAI SELDSLVM
Subjt: MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVM
Query: NHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRAL
NHTWDLV+LPM NKPIRCKWIFKRK KPNGSIERYKARL+VVGYTQKQ IDYFDTYSP+TKITTIRAL
Subjt: NHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRAL
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| KAD6453934.1 hypothetical protein E3N88_08640 [Mikania micrantha] | 9.4e-73 | 61.99 | Show/hide |
Query: IVSETPVAETVDTSNLR--CELELRRSKRQRTEKSFGPDFLSTFIVK--RRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTW
I+S V++ +S+++ +E RRSKR RTE SFGPDFL++F+ + D + +F ++FL++ DPKTYQEA+ SV++++WKEAIKSE+DS++ NHTW
Subjt: IVSETPVAETVDTSNLR--CELELRRSKRQRTEKSFGPDFLSTFIVK--RRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTW
Query: DLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMTQPEG
+L +LP GNKPI KWIFK+K +P+G++++YKARL++ G+TQK +DYFDTYSP+TKITTIR+LI++AAI+ LLIHQMDVKTAFLNGDL+EEIYM QPEG
Subjt: DLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMTQPEG
Query: FKISGQENKVCKLRKSLYGLK
F +SG E+KVCKLRKSLYGLK
Subjt: FKISGQENKVCKLRKSLYGLK
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| TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 2.5e-110 | 90.22 | Show/hide |
Query: MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVM
MHDPE IVSE PV+ETVDT NL CELE RRSKRQRTEKSFGPDFLSTFIV+RRDEIDCNFTNLFLIDEDPKTYQEALNSV+S MWKEAIKSELDSL M
Subjt: MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVM
Query: NHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMT
NHTW+LV+LPMGNKPIRCKWIFKRK KPNG IERYKARL+VVGYTQKQ +DYFDTYSP+TKITTIRALIALAAIH+LLIHQMDVKTAFLNG+LEEEIYMT
Subjt: NHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMT
Query: QPEGFKISGQENKVCKLRKSLYGLK
QPEGFKISGQENKVCKLRKSLYGLK
Subjt: QPEGFKISGQENKVCKLRKSLYGLK
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7T166 Ty1-copia retrotransposon protein | 2.8e-75 | 86.14 | Show/hide |
Query: MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVM
MHDPE IVSE PV+E VDT NL CELE RRSKRQRTEKSFGPDFLSTFIV+RRDEIDCNFTNLFLI+ED KTYQEALNSV+S MWKEAIKSELDSL M
Subjt: MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVM
Query: NHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIR
NHTW+LV+LPMGNKPIRCKWIFKRK KPNG IERYKARL+VVGYTQKQ +DYFDTYSP+TKITTIR
Subjt: NHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIR
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| A0A5A7T8N6 Ty1-copia retrotransposon protein | 2.2e-75 | 88.68 | Show/hide |
Query: MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVM
MHDPEN SIVSET V+E V+TSNLRCELELRRSKRQRTEKSF PDFLSTFIV+RRDEID NFTNL+LIDEDPKTYQE LNSVE SMWKEAIKSELDSLVM
Subjt: MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVM
Query: NHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPI
NHTWDLV+LPMGNKPIRC+WIFKRK KPNGS+ERYKARL+VVGYTQKQ IDYFDTYSP+
Subjt: NHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPI
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| A0A5A7TFH9 Ty1-copia retrotransposon protein | 2.2e-80 | 90.48 | Show/hide |
Query: MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVM
MHDPEN SIVSE PV+ETVDTSNLRCELELRRSKRQRTEKSFG DFLSTFIV+RRDEID NFTNL+LIDEDPKTYQEALNSV+ SMWKEAI SELDSLVM
Subjt: MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVM
Query: NHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRAL
NHTWDLV+LPM NKPIRCKWIFKRK KPNGSIERYKARL+VVGYTQKQ IDYFDTYSP+TKITTIRAL
Subjt: NHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRAL
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| A0A5D3C5T2 Ty1-copia retrotransposon protein | 1.2e-110 | 90.22 | Show/hide |
Query: MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVM
MHDPE IVSE PV+ETVDT NL CELE RRSKRQRTEKSFGPDFLSTFIV+RRDEIDCNFTNLFLIDEDPKTYQEALNSV+S MWKEAIKSELDSL M
Subjt: MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVM
Query: NHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMT
NHTW+LV+LPMGNKPIRCKWIFKRK KPNG IERYKARL+VVGYTQKQ +DYFDTYSP+TKITTIRALIALAAIH+LLIHQMDVKTAFLNG+LEEEIYMT
Subjt: NHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMT
Query: QPEGFKISGQENKVCKLRKSLYGLK
QPEGFKISGQENKVCKLRKSLYGLK
Subjt: QPEGFKISGQENKVCKLRKSLYGLK
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| A0A5N6PGV2 Reverse transcriptase Ty1/copia-type domain-containing protein | 4.5e-73 | 61.99 | Show/hide |
Query: IVSETPVAETVDTSNLR--CELELRRSKRQRTEKSFGPDFLSTFIVK--RRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTW
I+S V++ +S+++ +E RRSKR RTE SFGPDFL++F+ + D + +F ++FL++ DPKTYQEA+ SV++++WKEAIKSE+DS++ NHTW
Subjt: IVSETPVAETVDTSNLR--CELELRRSKRQRTEKSFGPDFLSTFIVK--RRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTW
Query: DLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMTQPEG
+L +LP GNKPI KWIFK+K +P+G++++YKARL++ G+TQK +DYFDTYSP+TKITTIR+LI++AAI+ LLIHQMDVKTAFLNGDL+EEIYM QPEG
Subjt: DLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMTQPEG
Query: FKISGQENKVCKLRKSLYGLK
F +SG E+KVCKLRKSLYGLK
Subjt: FKISGQENKVCKLRKSLYGLK
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 8.3e-32 | 38.05 | Show/hide |
Query: TSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKW
T N E+ RRS+R +T+ P +++ N +F ++ P ++ E + S W+EAI +EL++ +N+TW + P + +W
Subjt: TSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKW
Query: IFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKS
+F K G+ RYKARL+ G+TQK IDY +T++P+ +I++ R +++L ++L +HQMDVKTAFLNG L+EEIYM P+G IS + VCKL K+
Subjt: IFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKS
Query: LYGLK
+YGLK
Subjt: LYGLK
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.4e-42 | 46.94 | Show/hide |
Query: LRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKWIFKRKKKPN
LRRS+R R E P ST V D D +P++ +E L+ E + +A++ E++SL N T+ LV LP G +P++CKW+FK KK +
Subjt: LRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKWIFKRKKKPN
Query: GSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLK
+ RYKARL+V G+ QK+ ID+ + +SP+ K+T+IR +++LAA L + Q+DVKTAFL+GDLEEEIYM QPEGF+++G+++ VCKL KSLYGLK
Subjt: GSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLK
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| P92520 Uncharacterized mitochondrial protein AtMg00820 | 1.2e-14 | 36.19 | Show/hide |
Query: IDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRA
I ++PK+ + +++ W +A++ ELD+L N TW LV P+ + CKW+FK K +G+++R KARL+ G+ Q++ I + +TYSP+ + TIR
Subjt: IDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRA
Query: LIALA
++ +A
Subjt: LIALA
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 2.0e-33 | 44.3 | Show/hide |
Query: DEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPI-RCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRA
+ +P+T A+ +++ W+ A+ SE+++ + NHTWDLV P + I C+WIF +K +GS+ RYKARL+ GY Q+ +DY +T+SP+ K T+IR
Subjt: DEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPI-RCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRA
Query: LIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLK
++ +A S I Q+DV AFL G L +++YM+QP GF + N VCKLRK+LYGLK
Subjt: LIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLK
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.7e-32 | 43.04 | Show/hide |
Query: DEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPI-RCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRA
+ +P+T A+ +++ W++A+ SE+++ + NHTWDLV P + I C+WIF +K +GS+ RYKARL+ GY Q+ +DY +T+SP+ K T+IR
Subjt: DEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPI-RCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRA
Query: LIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLK
++ +A S I Q+DV AFL G L +E+YM+QP GF + + VC+LRK++YGLK
Subjt: LIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLK
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