; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0249341 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0249341
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr09:15110494..15111276
RNA-Seq ExpressionCmc09g0249341
SyntenyCmc09g0249341
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-13492.69Show/hide
Query:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM
        M +HKP+SKLVL++A DEST+VV+EVGPSSRVDETTTSGQSHPSQSLRMPRRSGR+VSQPNRYLGLTETQV IPDDGVEDPLSYKQA NDVDKDQW+KAM
Subjt:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM

Query:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG
        DLEMES+YFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGV+YEETFS VA LKSIRI LSIAT YDYEIWQMDVKTAFLNG
Subjt:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG

Query:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
        NLE+SIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
Subjt:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP

KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa]2.5e-13391.54Show/hide
Query:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM
        M +HKP+SKLVL++A DEST+VV+EVGPSSRVDETTTSGQSHPSQSLRMPRRSGR+VSQPNRYLGLTETQV IPDDGVEDPLSYKQA NDVDKDQW+KAM
Subjt:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM

Query:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG
        DLEMES+YFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYT++EGV+YEETFS VA LKSIRI LSIA  YDYEIWQMDVKTAFLNG
Subjt:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG

Query:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
        NLE+SIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
Subjt:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-13492.69Show/hide
Query:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM
        M +HKP+SKLVL++A DEST+VV+EVGPSSRVDETTTSGQSHPSQSLRMPRRSGR+VSQPNRYLGLTETQV IPDDGVEDPLSYKQA NDVDKDQW+KAM
Subjt:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM

Query:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG
        DLEMES+YFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGV+YEETFS VA LKSIRI LSIAT YDYEIWQMDVKTAFLNG
Subjt:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG

Query:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
        NLE+SIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
Subjt:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP

KAA0066192.1 gag/pol protein [Cucumis melo var. makuwa]4.0e-14498.85Show/hide
Query:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM
        MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKD+WIKAM
Subjt:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM

Query:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG
        DLEME IYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKT FLNG
Subjt:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG

Query:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
        NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
Subjt:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP

TYK15984.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-13492.69Show/hide
Query:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM
        M +HKP+SKLVL++A DEST+VV+EVGPSSRVDETTTSGQSHPSQSLRMPRRSGR+VSQPNRYLGLTETQV IPDDGVEDPLSYKQA NDVDKDQW+KAM
Subjt:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM

Query:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG
        DLEMES+YFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGV+YEETFS VA LKSIRI LSIAT YDYEIWQMDVKTAFLNG
Subjt:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG

Query:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
        NLE+SIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
Subjt:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP

TrEMBL top hitse value%identityAlignment
A0A5A7T2V9 Gag/pol protein1.2e-13391.54Show/hide
Query:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM
        M +HKP+SKLVL++A DEST+VV+EVGPSSRVDETTTSGQSHPSQSLRMPRRSGR+VSQPNRYLGLTETQV IPDDGVEDPLSYKQA NDVDKDQW+KAM
Subjt:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM

Query:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG
        DLEMES+YFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYT++EGV+YEETFS VA LKSIRI LSIA  YDYEIWQMDVKTAFLNG
Subjt:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG

Query:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
        NLE+SIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
Subjt:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP

A0A5A7TZD0 Gag/pol protein4.8e-13592.69Show/hide
Query:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM
        M +HKP+SKLVL++A DEST+VV+EVGPSSRVDETTTSGQSHPSQSLRMPRRSGR+VSQPNRYLGLTETQV IPDDGVEDPLSYKQA NDVDKDQW+KAM
Subjt:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM

Query:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG
        DLEMES+YFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGV+YEETFS VA LKSIRI LSIAT YDYEIWQMDVKTAFLNG
Subjt:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG

Query:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
        NLE+SIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
Subjt:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP

A0A5A7UYE8 Gag/pol protein4.8e-13592.69Show/hide
Query:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM
        M +HKP+SKLVL++A DEST+VV+EVGPSSRVDETTTSGQSHPSQSLRMPRRSGR+VSQPNRYLGLTETQV IPDDGVEDPLSYKQA NDVDKDQW+KAM
Subjt:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM

Query:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG
        DLEMES+YFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGV+YEETFS VA LKSIRI LSIAT YDYEIWQMDVKTAFLNG
Subjt:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG

Query:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
        NLE+SIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
Subjt:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP

A0A5D3BR24 Gag/pol protein2.0e-14498.85Show/hide
Query:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM
        MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKD+WIKAM
Subjt:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM

Query:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG
        DLEME IYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKT FLNG
Subjt:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG

Query:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
        NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
Subjt:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP

A0A5D3CYF4 Gag/pol protein4.8e-13592.69Show/hide
Query:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM
        M +HKP+SKLVL++A DEST+VV+EVGPSSRVDETTTSGQSHPSQSLRMPRRSGR+VSQPNRYLGLTETQV IPDDGVEDPLSYKQA NDVDKDQW+KAM
Subjt:  MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAM

Query:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG
        DLEMES+YFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGV+YEETFS VA LKSIRI LSIAT YDYEIWQMDVKTAFLNG
Subjt:  DLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNG

Query:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
        NLE+SIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP
Subjt:  NLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.5e-3239.88Show/hide
Query:  PLSYKQAKNDVDKDQWIKAMDLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSI
        P S+ + +   DK  W +A++ E+ +   N+ W +   PE    +  +W++  K +  G    +KARLVA+G+TQ+  ++YEETF+ VA + S R  LS+
Subjt:  PLSYKQAKNDVDKDQWIKAMDLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSI

Query:  ATVYDYEIWQMDVKTAFLNGNLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGF
           Y+ ++ QMDVKTAFLNG L++ I+M  P+G         VCKLN++IYGLKQA+R W   F+ A+K   F
Subjt:  ATVYDYEIWQMDVKTAFLNGNLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGF

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-4644.14Show/hide
Query:  HPSQSLRMP---RRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAMDLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSA
        HP+Q        RRS R   +  RY   +   V I DD   +P S K+  +  +K+Q +KAM  EMES+  N  ++LV+LP+G +P+ CKW++K K+D  
Subjt:  HPSQSLRMP---RRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAMDLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSA

Query:  GKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNGNLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASR
         K+  +KARLV KG+ Q++G++++E FS V  + SIR  LS+A   D E+ Q+DVKTAFL+G+LE+ I+M QPEGF   G++  VCKLN+S+YGLKQA R
Subjt:  GKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNGNLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASR

Query:  SWNIRFDTAIKSYGFDQNVDEP
         W ++FD+ +KS  + +   +P
Subjt:  SWNIRFDTAIKSYGFDQNVDEP

P92520 Uncharacterized mitochondrial protein AtMg008203.4e-1341.86Show/hide
Query:  WIKAMDLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIA
        W +AM  E++++  N  W LV  P     +GCKW++K K  S G +   KARLVAKG+ Q EG+ + ET+S V    +IR  L++A
Subjt:  WIKAMDLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.0e-3441.99Show/hide
Query:  DPLSYKQAKNDVDKDQWIKAMDLEMESIYFNSVWELVDLPEG-VKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPL
        +P +  QA  D   ++W  AM  E+ +   N  W+LV  P   V  +GC+WI+ +K +S G +  +KARLVAKGY QR G++Y ETFS V    SIRI L
Subjt:  DPLSYKQAKNDVDKDQWIKAMDLEMESIYFNSVWELVDLPEG-VKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPL

Query:  SIATVYDYEIWQMDVKTAFLNGNLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDE
         +A    + I Q+DV  AFL G L   ++MSQP GFI + +   VCKL +++YGLKQA R+W +     + + GF  +V +
Subjt:  SIATVYDYEIWQMDVKTAFLNGNLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDE

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE29.3e-3541.99Show/hide
Query:  DPLSYKQAKNDVDKDQWIKAMDLEMESIYFNSVWELV-DLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPL
        +P +  QA  D   D+W +AM  E+ +   N  W+LV   P  V  +GC+WI+ +K +S G +  +KARLVAKGY QR G++Y ETFS V    SIRI L
Subjt:  DPLSYKQAKNDVDKDQWIKAMDLEMESIYFNSVWELV-DLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPL

Query:  SIATVYDYEIWQMDVKTAFLNGNLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDE
         +A    + I Q+DV  AFL G L   ++MSQP GF+ + +   VC+L ++IYGLKQA R+W +   T + + GF  ++ +
Subjt:  SIATVYDYEIWQMDVKTAFLNGNLEQSIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDE

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 83.1e-4143.96Show/hide
Query:  EDPLSYKQAKNDVDKDQWIKAMDLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPL
        ++P +Y +AK  +    W  AMD E+ ++     WE+  LP   KPIGCKW+YK K +S G ++ +KARLVAKGYTQ+EG+++ ETFS V  L S+++ L
Subjt:  EDPLSYKQAKNDVDKDQWIKAMDLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPL

Query:  SIATVYDYEIWQMDVKTAFLNGNLEQSIFMSQPEGFIT-QGQE---QKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQN
        +I+ +Y++ + Q+D+  AFLNG+L++ I+M  P G+   QG       VC L +SIYGLKQASR W ++F   +  +GF Q+
Subjt:  SIATVYDYEIWQMDVKTAFLNGNLEQSIFMSQPEGFIT-QGQE---QKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQN

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)2.4e-1441.86Show/hide
Query:  WIKAMDLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIA
        W +AM  E++++  N  W LV  P     +GCKW++K K  S G +   KARLVAKG+ Q EG+ + ET+S V    +IR  L++A
Subjt:  WIKAMDLEMESIYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGATCACAAACCACAAAGCAAATTAGTATTAAATAAAGCTAATGATGAATCGACAAAGGTTGTTAATGAAGTTGGTCCTTCATCAAGAGTTGATGAAACCACCAC
ATCAGGTCAGTCTCATCCATCTCAATCGTTGAGAATGCCTCGACGTAGTGGGAGGATTGTATCACAACCTAACCGTTACTTGGGTTTAACTGAAACTCAGGTTTTCATAC
CAGATGATGGTGTTGAGGATCCATTGTCCTATAAACAGGCAAAGAATGATGTAGATAAGGACCAATGGATTAAAGCCATGGACCTTGAAATGGAGTCTATATACTTCAAT
TCAGTGTGGGAGCTTGTAGATCTACCCGAAGGGGTAAAACCTATAGGATGTAAATGGATCTATAAGAGAAAAAGAGATTCAGCTGGGAAGGTACAGACCTTCAAAGCTAG
ACTTGTAGCAAAAGGATATACCCAAAGGGAAGGGGTTAACTATGAAGAAACTTTTTCTCATGTTGCTACGTTAAAGTCTATAAGGATTCCTTTGTCCATCGCCACAGTTT
ATGATTATGAAATATGGCAAATGGATGTCAAGACTGCTTTTCTAAATGGCAATCTTGAACAGAGTATCTTTATGTCTCAGCCCGAGGGGTTCATAACCCAAGGTCAAGAG
CAAAAAGTTTGCAAGTTGAATCGATCCATTTATGGGTTGAAACAAGCATCTAGATCTTGGAACATTAGATTTGATACTGCGATCAAATCCTACGGTTTTGACCAAAATGT
TGATGAACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAGATCACAAACCACAAAGCAAATTAGTATTAAATAAAGCTAATGATGAATCGACAAAGGTTGTTAATGAAGTTGGTCCTTCATCAAGAGTTGATGAAACCACCAC
ATCAGGTCAGTCTCATCCATCTCAATCGTTGAGAATGCCTCGACGTAGTGGGAGGATTGTATCACAACCTAACCGTTACTTGGGTTTAACTGAAACTCAGGTTTTCATAC
CAGATGATGGTGTTGAGGATCCATTGTCCTATAAACAGGCAAAGAATGATGTAGATAAGGACCAATGGATTAAAGCCATGGACCTTGAAATGGAGTCTATATACTTCAAT
TCAGTGTGGGAGCTTGTAGATCTACCCGAAGGGGTAAAACCTATAGGATGTAAATGGATCTATAAGAGAAAAAGAGATTCAGCTGGGAAGGTACAGACCTTCAAAGCTAG
ACTTGTAGCAAAAGGATATACCCAAAGGGAAGGGGTTAACTATGAAGAAACTTTTTCTCATGTTGCTACGTTAAAGTCTATAAGGATTCCTTTGTCCATCGCCACAGTTT
ATGATTATGAAATATGGCAAATGGATGTCAAGACTGCTTTTCTAAATGGCAATCTTGAACAGAGTATCTTTATGTCTCAGCCCGAGGGGTTCATAACCCAAGGTCAAGAG
CAAAAAGTTTGCAAGTTGAATCGATCCATTTATGGGTTGAAACAAGCATCTAGATCTTGGAACATTAGATTTGATACTGCGATCAAATCCTACGGTTTTGACCAAAATGT
TGATGAACCTTGA
Protein sequenceShow/hide protein sequence
MTDHKPQSKLVLNKANDESTKVVNEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRIVSQPNRYLGLTETQVFIPDDGVEDPLSYKQAKNDVDKDQWIKAMDLEMESIYFN
SVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVNYEETFSHVATLKSIRIPLSIATVYDYEIWQMDVKTAFLNGNLEQSIFMSQPEGFITQGQE
QKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEP