; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc09g0249401 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc09g0249401
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr09:15248884..15250104
RNA-Seq ExpressionCmc09g0249401
SyntenyCmc09g0249401
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.4e-19589.57Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGLTNAP VFMDLMNRIFH                    +E+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG
        SRQL EHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFT HKSL YIFDQKELNLRQRRWLELIKDYDC IEYHPGKANVVADALSRKSRL KS LCG
Subjt:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG

Query:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA
        IRVALLNELRGSKAVVTTED GSLLAQFQVRSSLVT+IVRR SEDSNLQKK EKSKK LEVEFELRTDGAIVKQGRLCV NISELKNAIL+ A
Subjt:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.4e-19589.57Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGLTNAP VFMDLMNRIFH                    +E+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG
        SRQL EHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFT HKSL YIFDQKELNLRQRRWLELIKDYDC IEYHPGKANVVADALSRKSRL KS LCG
Subjt:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG

Query:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA
        IRVALLNELRGSKAVVTTED GSLLAQFQVRSSLVT+IVRR SEDSNLQKK EKSKK LEVEFELRTDGAIVKQGRLCV NISELKNAIL+ A
Subjt:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.4e-19589.57Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGLTNAP VFMDLMNRIFH                    +E+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG
        SRQL EHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFT HKSL YIFDQKELNLRQRRWLELIKDYDC IEYHPGKANVVADALSRKSRL KS LCG
Subjt:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG

Query:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA
        IRVALLNELRGSKAVVTTED GSLLAQFQVRSSLVT+IVRR SEDSNLQKK EKSKK LEVEFELRTDGAIVKQGRLCV NISELKNAIL+ A
Subjt:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA

KAA0062270.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.4e-19589.57Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGLTNAP VFMDLMNRIFH                    +E+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG
        SRQL EHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFT HKSL YIFDQKELNLRQRRWLELIKDYDC IEYHPGKANVVADALSRKSRL KS LCG
Subjt:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG

Query:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA
        IRVALLNELRGSKAVVTTED GSLLAQFQVRSSLVT+IVRR SEDSNLQKK EKSKK LEVEFELRTDGAIVKQGRLCV NISELKNAIL+ A
Subjt:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.4e-19589.57Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGLTNAP VFMDLMNRIFH                    +E+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG
        SRQL EHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFT HKSL YIFDQKELNLRQRRWLELIKDYDC IEYHPGKANVVADALSRKSRL KS LCG
Subjt:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG

Query:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA
        IRVALLNELRGSKAVVTTED GSLLAQFQVRSSLVT+IVRR SEDSNLQKK EKSKK LEVEFELRTDGAIVKQGRLCV NISELKNAIL+ A
Subjt:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA

TrEMBL top hitse value%identityAlignment
A0A5A7T1Y5 Reverse transcriptase2.1e-19589.57Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGLTNAP VFMDLMNRIFH                    +E+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG
        SRQL EHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFT HKSL YIFDQKELNLRQRRWLELIKDYDC IEYHPGKANVVADALSRKSRL KS LCG
Subjt:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG

Query:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA
        IRVALLNELRGSKAVVTTED GSLLAQFQVRSSLVT+IVRR SEDSNLQKK EKSKK LEVEFELRTDGAIVKQGRLCV NISELKNAIL+ A
Subjt:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA

A0A5A7T3K4 Reverse transcriptase2.1e-19589.57Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGLTNAP VFMDLMNRIFH                    +E+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG
        SRQL EHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFT HKSL YIFDQKELNLRQRRWLELIKDYDC IEYHPGKANVVADALSRKSRL KS LCG
Subjt:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG

Query:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA
        IRVALLNELRGSKAVVTTED GSLLAQFQVRSSLVT+IVRR SEDSNLQKK EKSKK LEVEFELRTDGAIVKQGRLCV NISELKNAIL+ A
Subjt:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA

A0A5A7U2V7 Reverse transcriptase2.1e-19589.57Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGLTNAP VFMDLMNRIFH                    +E+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG
        SRQL EHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFT HKSL YIFDQKELNLRQRRWLELIKDYDC IEYHPGKANVVADALSRKSRL KS LCG
Subjt:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG

Query:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA
        IRVALLNELRGSKAVVTTED GSLLAQFQVRSSLVT+IVRR SEDSNLQKK EKSKK LEVEFELRTDGAIVKQGRLCV NISELKNAIL+ A
Subjt:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA

A0A5A7UUL6 Reverse transcriptase2.1e-19589.57Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGLTNAP VFMDLMNRIFH                    +E+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG
        SRQL EHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFT HKSL YIFDQKELNLRQRRWLELIKDYDC IEYHPGKANVVADALSRKSRL KS LCG
Subjt:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG

Query:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA
        IRVALLNELRGSKAVVTTED GSLLAQFQVRSSLVT+IVRR SEDSNLQKK EKSKK LEVEFELRTDGAIVKQGRLCV NISELKNAIL+ A
Subjt:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA

A0A5D3BHI1 Reverse transcriptase2.1e-19589.57Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGLTNAP VFMDLMNRIFH                    +E+HEEHLRIVLQTLR+KQLYAKFSKCEFWLEQVVFLGHVVS KGVSVDPQKVEAVVNW
Subjt:  MPFGLTNAPTVFMDLMNRIFH--------------------QEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
        ERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKN KFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYA

Query:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG
        SRQL EHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFT HKSL YIFDQKELNLRQRRWLELIKDYDC IEYHPGKANVVADALSRKSRL KS LCG
Subjt:  SRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCG

Query:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA
        IRVALLNELRGSKAVVTTED GSLLAQFQVRSSLVT+IVRR SEDSNLQKK EKSKK LEVEFELRTDGAIVKQGRLCV NISELKNAIL+ A
Subjt:  IRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHA

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.3e-5338.28Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQ--------------------EAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGL NAP  F   MN I                       + H + L +V + L    L  +  KCEF  ++  FLGHV++  G+  +P+K+EA+  +
Subjt:  MPFGLTNAPTVFMDLMNRIFHQ--------------------EAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSD-KCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAY
          PT   E+++FLGL GYYR+FI +F+ +A P+T   +KN K + ++ + + +F++LK  +   PIL +P   K + +  DAS + LG VL QDG+ ++Y
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSD-KCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAY

Query:  ASRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSR
         SR LNEHE NY T + EL A+V A K +RHYL G    I + H+ L++++  K+ N +  RW   + ++D  I+Y  GK N VADALSR
Subjt:  ASRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSR

P10394 Retrovirus-related Pol polyprotein from transposon 4122.2e-4029.03Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFH-------------------QEAHE-EHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        +PFGL  AP  F  +M   F                     E H  ++L  V    R+  L     KC F++ +V FLGH  + KG+  D +K + + N+
Subjt:  MPFGLTNAPTVFMDLMNRIFH-------------------QEAHE-EHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGN----V
          P  A   R F+    YYRRFI++F+  +  +T L +KN  FEW+D+C+++F  LK +L+   +L  P   K++ I  DAS+   G VL Q+ N     
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGN----V

Query:  IAYASRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKS
        +AYASR   + E N  T + ELAA+  A+  +R Y++G+   + T H+ L Y+F     + +  R    +++Y+  +EY  GK N VADALSR       
Subjt:  IAYASRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKS

Query:  VLCGIRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCV--LNISEL-KNAILDHA
            I +  L ++ G+   VTT       +        + K  + ++ + N+ + +   +    V  +L     + K G+  +   ++ +L  N ILD  
Subjt:  VLCGIRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQKKLEKSKKSLEVEFELRTDGAIVKQGRLCV--LNISEL-KNAILDHA

Query:  ELL
        + L
Subjt:  ELL

P10401 Retrovirus-related Pol polyprotein from transposon gypsy1.5e-4133.55Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQEA--------------------HEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        +PFGL NA ++F   ++ +  ++                     H  H+  VL+ L D  +     K  F+ E V +LG +VS  G   DP+KV+A+  +
Subjt:  MPFGLTNAPTVFMDLMNRIFHQEA--------------------HEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTR-----------KNAKFEWSDKCEQSFQELKKRLVTAP-ILALPVTGKDYVIYCDASRLGLGC
          P    +VRSFLGLA YYR FI+DF+ +A P+T + +           K    E+++    +FQ L+  L +   IL  P   K + +  DAS  G+G 
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTR-----------KNAKFEWSDKCEQSFQELKKRLVTAP-ILALPVTGKDYVIYCDASRLGLGC

Query:  VLMQDGNVIAYASRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEK-CHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADAL
        VL Q+G  I   SR L + E NY T++ EL A+V AL   +++L+G +  +IFT H+ L +    +  N + +RW   I  ++  + Y PGK N VADAL
Subjt:  VLMQDGNVIAYASRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEK-CHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADAL

Query:  SRKS
        SR++
Subjt:  SRKS

P20825 Retrovirus-related Pol polyprotein from transposon 2973.3e-5238.83Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQ--------------------EAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        MPFGL NAP  F   MN I                         H   +++V   L D  L  +  KCEF  ++  FLGH+V+  G+  +P KV+A+V++
Subjt:  MPFGLTNAPTVFMDLMNRIFHQ--------------------EAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCE--QSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIA
          PT   E+R+FLGL GYYR+FI +++ +A P+T+  +K  K + + K E  ++F++LK  ++  PIL LP   K +V+  DAS L LG VL Q+G+ I+
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEWSDKCE--QSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIA

Query:  YASRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSR
        + SR LN+HE NY   + EL A+V A K +RHYL G +  I + H+ L ++ + KE   +  RW   + +Y   I+Y  GK N VADALSR
Subjt:  YASRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.9e-4837.05Show/hide
Query:  MPFGLTNAPTVFMDLMNRIFHQ--------------------EAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW
        +PFGL NAP +F  +++ I  +                    + H ++LR+VL +L    L     K  F   QV FLG++V+  G+  DP+KV A+   
Subjt:  MPFGLTNAPTVFMDLMNRIFHQ--------------------EAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNW

Query:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTR---KNAKFEWSDKCE--------QSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCV
          PTS  E++ FLG+  YYR+FI+D++++A PLT LTR    N K   S K          QSF +LK  L ++ ILA P   K + +  DAS   +G V
Subjt:  ERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTR---KNAKFEWSDKCE--------QSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCV

Query:  LMQD----GNVIAYASRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGE-KCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVA
        L QD       IAY SR LN+ E NY T + E+ A++ +L   R YL+G     ++T H+ L +    +  N + +RW   I++Y+C + Y PGK+NVVA
Subjt:  LMQD----GNVIAYASRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGE-KCHIFTYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVA

Query:  DALSR
        DALSR
Subjt:  DALSR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein5.8e-2845.97Show/hide
Query:  HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLG--HVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEW
        HL +VLQ     Q YA   KC F   Q+ +LG  H++SG+GVS DP K+EA+V W  P + TE+R FLGL GYYRRF++++ ++  PLT L +KN+  +W
Subjt:  HLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLG--HVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNAKFEW

Query:  SDKCEQSFQELKKRLVTAPILALP
        ++    +F+ LK  + T P+LALP
Subjt:  SDKCEQSFQELKKRLVTAPILALP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTCGGTTTAACGAATGCACCAACGGTCTTCATGGATCTCATGAACAGGATCTTCCATCAAGAAGCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACG
TGATAAACAGTTGTATGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGACATGTAGTTTCAGGAAAAGGAGTTAGTGTTGATCCACAAAAAG
TAGAAGCGGTTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGTAGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCACGATTGGCA
TTGCCTTTGACTGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTCACAGCACCTATTCTGGC
ACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGCAGT
TGAATGAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCAGTTGTTTTAGCATTAAAAATCTGGAGACACTATTTGTTCGGGGAAAAGTGTCATATTTTC
ACATATCATAAAAGTCTGAATTATATTTTTGATCAGAAAGAGCTAAATCTGAGACAAAGGCGATGGCTAGAACTGATTAAAGATTATGATTGTGCTATAGAGTATCATCC
AGGTAAGGCTAACGTAGTAGCGGATGCATTAAGTAGGAAGTCAAGACTTTCGAAGAGTGTCTTGTGTGGTATTCGAGTAGCTTTGTTGAATGAGTTAAGAGGTTCCAAGG
CAGTAGTAACTACAGAAGATCCAGGAAGTCTCTTAGCTCAATTTCAGGTTCGGTCTTCTCTAGTAACTAAAATTGTAAGAAGACTGTCAGAGGACAGTAATTTACAGAAG
AAGCTTGAGAAATCCAAGAAAAGCTTAGAGGTGGAGTTTGAGCTGAGAACAGATGGAGCCATTGTTAAACAGGGAAGATTATGTGTTCTGAATATCAGTGAGCTTAAGAA
TGCTATTCTAGACCATGCAGAACTTCTGTTTGCTGGAATGAAGTGGGAGAGCGAAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCATTCGGTTTAACGAATGCACCAACGGTCTTCATGGATCTCATGAACAGGATCTTCCATCAAGAAGCCCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACG
TGATAAACAGTTGTATGCTAAGTTCAGCAAATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGACATGTAGTTTCAGGAAAAGGAGTTAGTGTTGATCCACAAAAAG
TAGAAGCGGTTGTCAATTGGGAAAGACCAACTAGTGCGACAGAAGTACGTAGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCACGATTGGCA
TTGCCTTTGACTGCTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTCACAGCACCTATTCTGGC
ACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTGATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGCAGT
TGAATGAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCAGTTGTTTTAGCATTAAAAATCTGGAGACACTATTTGTTCGGGGAAAAGTGTCATATTTTC
ACATATCATAAAAGTCTGAATTATATTTTTGATCAGAAAGAGCTAAATCTGAGACAAAGGCGATGGCTAGAACTGATTAAAGATTATGATTGTGCTATAGAGTATCATCC
AGGTAAGGCTAACGTAGTAGCGGATGCATTAAGTAGGAAGTCAAGACTTTCGAAGAGTGTCTTGTGTGGTATTCGAGTAGCTTTGTTGAATGAGTTAAGAGGTTCCAAGG
CAGTAGTAACTACAGAAGATCCAGGAAGTCTCTTAGCTCAATTTCAGGTTCGGTCTTCTCTAGTAACTAAAATTGTAAGAAGACTGTCAGAGGACAGTAATTTACAGAAG
AAGCTTGAGAAATCCAAGAAAAGCTTAGAGGTGGAGTTTGAGCTGAGAACAGATGGAGCCATTGTTAAACAGGGAAGATTATGTGTTCTGAATATCAGTGAGCTTAAGAA
TGCTATTCTAGACCATGCAGAACTTCTGTTTGCTGGAATGAAGTGGGAGAGCGAAAGTTAG
Protein sequenceShow/hide protein sequence
MPFGLTNAPTVFMDLMNRIFHQEAHEEHLRIVLQTLRDKQLYAKFSKCEFWLEQVVFLGHVVSGKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLA
LPLTALTRKNAKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLNEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIF
TYHKSLNYIFDQKELNLRQRRWLELIKDYDCAIEYHPGKANVVADALSRKSRLSKSVLCGIRVALLNELRGSKAVVTTEDPGSLLAQFQVRSSLVTKIVRRLSEDSNLQK
KLEKSKKSLEVEFELRTDGAIVKQGRLCVLNISELKNAILDHAELLFAGMKWESES